def gather_metadata(source):
'''
Loops through all subfolders that contain pbcore_csv and then harvests the
metadata and store in a single file for the purposes of batch import into
the DB TEXTWORKS technical database.
'''
metadata = []
for root, _, filenames in sorted(os.walk(source)):
for filename in filenames:
if filename.endswith('pbcore.csv'):
with open(os.path.join(root,filename), 'r') as csv_file:
csv_rows = csv_file.readlines()
if metadata:
metadata.append([csv_rows[1]])
else:
metadata.append([csv_rows[0]])
metadata.append([csv_rows[1]])
collated_pbcore = os.path.join(
ififuncs.make_desktop_logs_dir(),
time.strftime("%Y-%m-%dT%H_%M_%S_pbcore.csv")
)
with open(collated_pbcore, 'w') as fo:
for i in metadata:
fo.write(i[0])
return collated_pbcore
def log_report(log_names):
'''
Analyzes all the moveit.py logs on the desktop and print a report.
'''
desktop_logs_dir = ififuncs.make_desktop_logs_dir()
for i in log_names:
if os.path.isfile(i):
print "%-*s : %s" % (50, os.path.basename(i)[:-24], analyze_log(i))
else:
print i, 'can\'t find log file, trying again...'
log_names.remove(i)
for logs in os.listdir(desktop_logs_dir):
# look at log filename minus the seconds and '.log'
if os.path.basename(i)[:-7] in logs:
# make sure that the alternate log filename is more recent
if int(
os.path.basename(logs)[-12:-4].replace('_', '')
) > int(
os.path.basename(i)[-12:-4].replace('_', '')):
print 'trying to analyze %s' % logs
print "%-*s : %s" % (
50, os.path.basename(logs)[:-24], analyze_log(
os.path.join(desktop_logs_dir, logs))
)
log_names.append(os.path.join(desktop_logs_dir, logs))
def main():
'''
Launches the other functions wihch attempt to run multiple copyit.py
instances if manifests and matching sidecar directories are found
inside of the input directory.
'''
args = parse_args()
all_files = find_manifest(args)
processed_dirs = []
log_names = []
print '\n\n**** All of these folders will be copied to %s\n' % args.o
for i in all_files:
print i
for i in all_files:
absolute_path = os.path.join(args.o, os.path.basename(i))
if os.path.isdir(absolute_path):
print('%s already exists, skipping') % (absolute_path)
else:
desktop_logs_dir = make_desktop_logs_dir()
if args.l:
log_name = copyit.main(
['-l', os.path.join(args.input, i), args.o]
)
log_names.append(log_name)
else:
log_name = copyit.main(
[os.path.join(args.input, i), args.o]
)
log_names.append(log_name)
processed_dirs.append(os.path.basename(os.path.join(args.input, i)))
print '********\nWARNING - Please check the ifiscripts_logs directory on your Desktop to verify if ALL of your transfers were successful'
analyze_reports(log_names, desktop_logs_dir)
def log_report(log_names):
'''
Analyzes all the moveit.py logs on the desktop and print a report.
'''
desktop_logs_dir = ififuncs.make_desktop_logs_dir()
for i in log_names:
if os.path.isfile(i):
print(("%-*s : %s" %
(50, os.path.basename(i)[:-24], analyze_log(i))))
else:
print((i, 'can\'t find log file, trying again...'))
log_names.remove(i)
for logs in os.listdir(desktop_logs_dir):
# look at log filename minus the seconds and '.log'
if os.path.basename(i)[:-7] in logs:
# make sure that the alternate log filename is more recent
if int(os.path.basename(logs)[-12:-4].replace(
'_', '')) > int(
os.path.basename(i)[-12:-4].replace('_', '')):
print(('trying to analyze %s' % logs))
print(("%-*s : %s" %
(50, os.path.basename(logs)[:-24],
analyze_log(
os.path.join(desktop_logs_dir, logs)))))
log_names.append(os.path.join(desktop_logs_dir, logs))
def setup(full_path, user):
'''
Sets up filepaths for the rest of the script.
This also checks if a mediaconch xml already exists.
'''
desktop_logs_dir = ififuncs.make_desktop_logs_dir()
log_name_source_ = os.path.basename(full_path) + time.strftime("_%Y_%m_%dT%H_%M_%S")
log_name_source = "%s/%s_mediaconch_validation.log" % (desktop_logs_dir, log_name_source_)
filename = os.path.basename(full_path)
object_dir = os.path.dirname(full_path)
parent_dir = os.path.dirname(object_dir)
sip_root = os.path.dirname(parent_dir)
metadata_dir = os.path.join(parent_dir, 'metadata')
manifest = os.path.join(
sip_root, os.path.basename(parent_dir) + '_manifest.md5'
)
if not os.path.isfile(manifest):
print 'manifest does not exist %s' % manifest
return 'skipping'
if os.path.isdir(metadata_dir):
mediaconch_xmlfile_basename = '%s_mediaconch_validation.xml' % filename
mediaconch_xmlfile = os.path.join(
metadata_dir, mediaconch_xmlfile_basename
)
if os.path.isfile(mediaconch_xmlfile):
print 'mediaconch xml already exists'
return 'skipping'
else:
print 'no metadata directory found. Exiting.'
return log_name_source, user, mediaconch_xmlfile, manifest, full_path, parent_dir
def setup(full_path, user):
'''
Sets up filepaths for the rest of the script.
This also checks if a mediaconch xml already exists.
'''
desktop_logs_dir = ififuncs.make_desktop_logs_dir()
log_name_source_ = os.path.basename(full_path) + time.strftime(
"_%Y_%m_%dT%H_%M_%S")
log_name_source = "%s/%s_mediaconch_validation.log" % (desktop_logs_dir,
log_name_source_)
filename = os.path.basename(full_path)
object_dir = os.path.dirname(full_path)
parent_dir = os.path.dirname(object_dir)
sip_root = os.path.dirname(parent_dir)
metadata_dir = os.path.join(parent_dir, 'metadata')
manifest = os.path.join(sip_root,
os.path.basename(parent_dir) + '_manifest.md5')
if not os.path.isfile(manifest):
print('manifest does not exist %s' % manifest)
return 'skipping'
if os.path.isdir(metadata_dir):
mediaconch_xmlfile_basename = '%s_mediaconch_validation.xml' % filename
mediaconch_xmlfile = os.path.join(metadata_dir,
mediaconch_xmlfile_basename)
if os.path.isfile(mediaconch_xmlfile):
print('mediaconch xml already exists')
return 'skipping'
else:
print('no metadata directory found. Exiting.')
return log_name_source, user, mediaconch_xmlfile, manifest, full_path, parent_dir
def main():
'''
Launches the other functions wihch attempt to run multiple copyit.py
instances if manifests and matching sidecar directories are found
inside of the input directory.
'''
args = parse_args()
all_files = find_manifest(args)
processed_dirs = []
log_names = []
print('\n\n - **** All of these folders will be copied to %s\n' % args.o)
for i in all_files:
absolute_path = os.path.join(args.o, os.path.basename(i))
if os.path.isdir(absolute_path):
print(' - %s already exists, skipping' % absolute_path)
else:
print(' - %s will be copied' % i)
time.sleep(2)
for i in all_files:
absolute_path = os.path.join(args.o, os.path.basename(i))
if os.path.isdir(absolute_path):
print(' - %s already exists, skipping' % absolute_path)
else:
desktop_logs_dir = make_desktop_logs_dir()
copyit_cmd = [os.path.join(args.input, i), args.o]
if args.l:
copyit_cmd.append('-l')
elif args.y:
copyit_cmd.append('-y')
log_name = copyit.main(copyit_cmd)
log_names.append(log_name)
processed_dirs.append(os.path.basename(os.path.join(args.input, i)))
print(' - ********\nWARNING - Please check the ifiscripts_logs directory on your Desktop to verify if ALL of your transfers were successful')
analyze_reports(log_names, desktop_logs_dir)
def main():
'''
Launches functions
'''
log_names = []
args = parse_args()
desktop_logs_dir = ififuncs.make_desktop_logs_dir()
for i in args.i:
log_names.append(copyit.main([i, args.o]))
print '********\nWARNING - Please check the ifiscripts_logs directory on your Desktop to verify if ALL of your transfers were successful'
masscopy.analyze_reports(log_names, desktop_logs_dir)
def main():
'''
Launches the commands that generate the CSV error report
'''
args = parse_args()
source = args.input
csv_filename = os.path.join(
ififuncs.make_desktop_logs_dir(),
time.strftime("%Y-%m-%dT%H_%M_%S_videoerrors.csv"))
print('Report stored as %s' % csv_filename)
if not os.path.isfile(csv_filename):
ififuncs.create_csv(
csv_filename,
['filename', 'start_time', 'timestamp', 'error', 'notes'])
for root, _, filenames in os.walk(source):
for filename in filenames:
if filename.endswith('.m2t'):
with open(csv_filename, 'r') as fo:
if not filename in fo.read():
try:
start_time = bitc.getffprobe(
'start_time', 'stream=start_time',
os.path.join(root, filename)).rsplit()[0]
json_output = subprocess.check_output([
'ffprobe', '-sexagesimal',
os.path.join(root, filename), '-show_error',
'-show_log', '16', '-show_frames', '-of',
'json'
])
errors = False
ffprobe_dict = json.loads(json_output)
for values in ffprobe_dict:
for more in ffprobe_dict[values]:
if 'logs' in more:
errors = True
print(more['pkt_pts_time'],
more['logs'])
ififuncs.append_csv(
csv_filename, [
filename, start_time,
more['pkt_pts_time'],
more['logs'], ''
])
if errors == False:
ififuncs.append_csv(csv_filename, [
filename, start_time, 'no errors',
'no errors', ''
])
except subprocess.CalledProcessError:
ififuncs.append_csv(csv_filename, [
filename, start_time,
'script error - process file manually', '', ''
])
print('Report stored as %s' % csv_filename)
def main():
parser = make_parser()
args = parser.parse_args()
desktop_logs_dir = make_desktop_logs_dir()
log_name_source_ = os.path.basename(args.input) + time.strftime("_%Y_%m_%dT%H_%M_%S")
log = "%s/%s_fixity_validation.log" % (desktop_logs_dir, log_name_source_)
root = logging.getLogger()
logging.basicConfig(filename=log, filemode='a',level=logging.INFO)
logging.info('Started at %s using the following workstation: %s' % (time.strftime("%Y-%m-%dT%H:%M:%S "), getpass.getuser()))
#root.setLevel(logging.DEBUG)
check_manifest(args.input)
def main(args_):
'''
Batch process packages by running accession.py and makepbcore.py
'''
args = parse_args(args_)
oe_list = []
if args.csv:
for line_item in ififuncs.extract_metadata(args.csv)[0]:
oe_number = line_item['Object Entry'].lower()
# this transforms OE-#### to oe####
transformed_oe = oe_number[:2] + oe_number[3:]
oe_list.append(transformed_oe)
if args.reference:
reference_number = get_filmographic_number(args.reference)
else:
reference_number = ififuncs.get_reference_number()
user = ififuncs.get_user()
accession_number = get_number(args)
accession_digits = int(accession_number[3:])
to_accession = initial_check(args, accession_digits, oe_list,
reference_number)
register = accession.make_register()
if args.csv:
desktop_logs_dir = ififuncs.make_desktop_logs_dir()
new_csv = os.path.join(desktop_logs_dir, os.path.basename(args.csv))
filmographic_dict, headers = ififuncs.extract_metadata(args.csv)
for oe_package in to_accession:
for filmographic_record in filmographic_dict:
if os.path.basename(oe_package).upper(
)[:2] + '-' + os.path.basename(
oe_package)[2:] == filmographic_record['Object Entry']:
filmographic_record['Reference Number'] = to_accession[
oe_package][1]
with open(new_csv, 'w') as csvfile:
fieldnames = headers
writer = csv.DictWriter(csvfile, fieldnames=fieldnames)
writer.writeheader()
for i in filmographic_dict:
writer.writerow(i)
if args.dryrun:
sys.exit()
proceed = ififuncs.ask_yes_no('Do you want to proceed?')
if proceed == 'Y':
for package in sorted(to_accession.keys()):
accession.main([
package, '-user', user, '-p', '-f', '-number',
to_accession[package][0], '-reference',
to_accession[package][1], '-register', register
])
collated_pbcore = gather_metadata(args.input)
print '\nA helper accessions register has been generated in order to help with registration - located here: %s' % register
print '\nA modified filmographic CSV has been generated with added reference numbers - located here: %s' % new_csv
print '\nA collated CSV consisting of each PBCore report has been generated for batch database import - located here: %s' % collated_pbcore
def main():
parser = make_parser()
args = parser.parse_args()
desktop_logs_dir = make_desktop_logs_dir()
log_name_source_ = os.path.basename(
args.input) + time.strftime("_%Y_%m_%dT%H_%M_%S")
log = "%s/%s_fixity_validation.log" % (desktop_logs_dir, log_name_source_)
root = logging.getLogger()
logging.basicConfig(filename=log, filemode='a', level=logging.INFO)
logging.info('Started at %s using the following workstation: %s' %
(time.strftime("%Y-%m-%dT%H:%M:%S "), getpass.getuser()))
#root.setLevel(logging.DEBUG)
check_manifest(args.input)
def make_register():
'''
This sends a placeholder accessions register to the desktop logs directory.
This should get rid of some of the more painful, repetitive identifier matching.
'''
desktop_logs_dir = ififuncs.make_desktop_logs_dir()
register = os.path.join(
desktop_logs_dir, 'register_' + time.strftime("%Y-%m-%dT%H_%M_%S.csv"))
ififuncs.create_csv(register, (
'entry number', 'accession number', 'date acquired',
'date accessioned', 'acquired from', 'acquisition method',
'simple name; basic description; identification; historical information',
'notes'))
return register
def make_oe_register():
'''
This sends a placeholder oe register to the desktop logs directory.
This should get rid of some of the more painful, repetitive identifier matching.
'''
desktop_logs_dir = ififuncs.make_desktop_logs_dir()
oe_register = os.path.join(
desktop_logs_dir,
'oe_helper_register_' + time.strftime("%Y-%m-%dT%H_%M_%S.csv"))
ififuncs.create_csv(
oe_register,
('OE No.', 'Date Received', 'Quantity', 'Format', 'Description',
'Contact Name', 'Type of Acquisition', 'Accession No.',
'Additional Information', 'Habitat', 'Vinegar No'))
return oe_register
def main():
parser = make_parser()
args = parser.parse_args()
desktop_logs_dir = make_desktop_logs_dir()
log_name_source_ = os.path.basename(
args.input) + time.strftime("_%Y_%m_%dT%H_%M_%S")
log_name_source = "%s/%s_fixity_validation.log" % (desktop_logs_dir,
log_name_source_)
ififuncs.generate_log(log_name_source, 'EVENT = validate.py started')
ififuncs.generate_log(
log_name_source, 'eventDetail=validate.py %s' %
ififuncs.get_script_version('validate.py'))
ififuncs.generate_log(log_name_source, 'Command line arguments: %s' % args)
manifest = check_manifest(args.input, log_name_source)
log_results(manifest, log_name_source, args)
def main(args_):
'''
Launches functions that will generate a helper accessions register
'''
args = parse_args(args_)
sorted_csv_dict = ififuncs.extract_metadata(args.sorted_csv)[0]
pbcore_csv_dict = ififuncs.extract_metadata(args.pbcore_csv)[0]
filmo_csv_dict = ififuncs.extract_metadata(args.filmo_csv)[0]
for accession in sorted_csv_dict:
number = accession['accession number']
for technical_record in pbcore_csv_dict:
if technical_record['Accession Number'] == number:
accession['acquisition method'] = technical_record[
'Type Of Deposit']
accession['acquired from'] = technical_record['Donor']
accession['date acquired'] = technical_record[
'Date Of Donation']
for filmographic_record in filmo_csv_dict:
if filmographic_record[
'Filmographic URN'] == technical_record[
'Reference Number']:
if filmographic_record['Title/Name'] == '':
title = filmographic_record[
'Series Title'] + '; ' + filmographic_record[
'Episode No']
else:
title = filmographic_record['Title/Name']
simple = '%s (%s) | %s' % (
title, filmographic_record['Year'],
technical_record['dig_object_descrip'])
if accession['acquisition method'] == 'Reproduction':
simple += ' | Reproduction of %s' % technical_record[
'TTape Origin']
accession[
'simple name; basic description; identification; historical information'] = simple
desktop_logs_dir = ififuncs.make_desktop_logs_dir()
new_csv_filename = time.strftime(
"%Y-%m-%dT%H_%M_%S_") + 'helper_register.csv'
new_csv = os.path.join(desktop_logs_dir, new_csv_filename)
with open(new_csv, 'w', encoding='utf-8') as csvfile:
fieldnames = ififuncs.extract_metadata(args.sorted_csv)[1]
writer = csv.DictWriter(csvfile, fieldnames=fieldnames)
writer.writeheader()
for i in sorted_csv_dict:
writer.writerow(i)
print('\nYour helper CSV file is located here: %s\n' % new_csv)
return new_csv
def main(args_):
'''
Launches all other functions when called from the command line.
'''
args = make_parser(args_)
desktop_logs_dir = make_desktop_logs_dir()
log_name_source_ = os.path.basename(
args.input) + time.strftime("_%Y_%m_%dT%H_%M_%S")
log_name_source = "%s/%s_fixity_validation.log" % (desktop_logs_dir,
log_name_source_)
ififuncs.generate_log(log_name_source, 'EVENT = validate.py started')
ififuncs.generate_log(
log_name_source, 'eventDetail=validate.py %s' %
ififuncs.get_script_version('validate.py'))
ififuncs.generate_log(log_name_source, 'Command line arguments: %s' % args)
manifest, error_counter = check_manifest(args, log_name_source)
if args.update_log:
log_results(manifest, log_name_source, args)
return error_counter
def main():
parser = make_parser()
args = parser.parse_args()
desktop_logs_dir = make_desktop_logs_dir()
log_name_source_ = os.path.basename(args.input) + time.strftime("_%Y_%m_%dT%H_%M_%S")
log_name_source = "%s/%s_fixity_validation.log" % (desktop_logs_dir, log_name_source_)
ififuncs.generate_log(
log_name_source,
'EVENT = validate.py started'
)
ififuncs.generate_log(
log_name_source,
'eventDetail=validate.py %s' % ififuncs.get_script_version('validate.py')
)
ififuncs.generate_log(
log_name_source,
'Command line arguments: %s' % args
)
manifest = check_manifest(args.input, log_name_source)
log_results(manifest, log_name_source, args)
def setup(args_):
'''
Sets a bunch of filename variables and parses command line.
some examples:
if manifest_sidecar = /home/kieranjol/fakeeeeee/fakeeeeee_manifest.md5
then manifes_root = /home/kieranjol/fakeeeeee_manifest.md5
'''
parser = argparse.ArgumentParser(
description='Copy directory with checksum comparison'
'and manifest generation.Written by Kieran O\'Leary.')
parser.add_argument('source', help='Input directory')
parser.add_argument('destination', help='Destination directory')
parser.add_argument(
'-l',
'-lto',
action='store_true',
help='use gcp instead of rsync on osx for SPEED on LTO')
parser.add_argument('-move',
action='store_true',
help='Move files instead of copying - much faster!')
parser.add_argument(
'-justcopy',
action='store_true',
help='Do not generate destination manifest and verify integrity :(')
parser.add_argument(
'-y',
action='store_true',
help=
'Answers YES to the question: Not enough free space, would you like to continue?'
)
rootpos = ''
dircheck = None
args = parser.parse_args(args_)
if os.path.isdir(args.source):
dircheck = check_for_sip(args.source)
if dircheck != None:
if os.path.isdir(dircheck):
source = check_for_sip(args.source)
destination = os.path.join(args.destination,
os.path.basename(args.source))
os.makedirs(destination)
else:
source = os.path.abspath(args.source)
destination = args.destination
normpath = os.path.normpath(source)
#is there any benefit to this over os.path.basename
dirname = os.path.split(os.path.basename(source))[1]
if dirname == '':
rootpos = 'y'
'''
dirname = raw_input(
'What do you want your destination folder to be called?\n'
)
'''
relative_path = normpath.split(os.sep)[-1]
# or hardcode
destination_final_path = os.path.join(destination, dirname)
if rootpos == 'y':
manifest_destination = os.path.dirname(
destination) + '/%s_manifest.md5' % os.path.basename(destination)
else:
manifest_destination = destination + '/%s_manifest.md5' % dirname
if os.path.isfile(manifest_destination):
print('Destination manifest already exists')
if rootpos == 'y':
manifest_filename = '%s_manifest.md5' % os.path.basename(destination)
else:
manifest_filename = '%s_manifest.md5' % dirname
desktop_manifest_dir = make_desktop_manifest_dir()
# manifest = desktop manifest, looks like this can get rewritten later.
manifest = os.path.join(desktop_manifest_dir, manifest_filename)
manifest_sidecar = os.path.join(os.path.dirname(source),
relative_path + '_manifest.md5')
manifest_root = source + '/%s_manifest.md5' % os.path.basename(source)
log_name_filename = dirname + time.strftime("_%Y_%m_%dT%H_%M_%S")
desktop_logs_dir = make_desktop_logs_dir()
log_name_source = "%s/%s.log" % (desktop_logs_dir, log_name_filename)
generate_log(log_name_source, 'copyit.py started.')
ififuncs.generate_log(
log_name_source,
'eventDetail=copyit.py %s' % ififuncs.get_script_version('copyit.py'))
generate_log(log_name_source, 'Source: %s' % source)
generate_log(log_name_source, 'Destination: %s' % destination)
print('Checking total size of input folder')
total_input_size = ififuncs.get_folder_size(os.path.abspath(args.source))
print('Checking if enough space in destination folder')
free_space = ififuncs.get_free_space(args.destination)
if total_input_size > free_space:
print('You do not have enough free space!')
if args.y:
go_forth_blindly = 'Y'
else:
go_forth_blindly = ififuncs.ask_yes_no(
'Would you like to continue anyway? Press Y or N')
if go_forth_blindly == 'Y':
generate_log(
log_name_source,
'You do not have enough free space!, but the user has decided to continue anyhow'
)
else:
generate_log(log_name_source,
'You do not have enough free space! - Exiting')
sys.exit()
return args, rootpos, manifest_sidecar, log_name_source, destination_final_path, manifest_root, manifest_destination, manifest, destination, dirname, desktop_manifest_dir
source = args.source
source_parent_dir = os.path.dirname(source)
normpath = os.path.normpath(source)
dirname = os.path.split(os.path.basename(source))[1]
relative_path = normpath.split(os.sep)[-1]
if args.s:
manifest = source_parent_dir + '/%s_manifest.md5' % relative_path
else:
manifest_ = '/%s_manifest.md5' % relative_path
desktop_manifest_dir = make_desktop_manifest_dir()
manifest = "%s/%s" % (desktop_manifest_dir, manifest_)
log_name_source_ = os.path.basename(args.source) + time.strftime("_%Y_%m_%dT%H_%M_%S")
desktop_logs_dir = make_desktop_logs_dir()
log_name_source = "%s/%s.log" % (desktop_logs_dir, log_name_source_)
generate_log(log_name_source, 'move.py started.')
generate_log(log_name_source, 'Source: %s' % source)
if os.path.isfile(source):
print '\nFile checksum is not currently supported, only directories.\n'
generate_log(log_name_source, 'Error: Attempted to generate manifest for file. Only Directories/Folders are currently supported')
generate_log(log_name_source, 'move.py exit')
sys.exit()
elif not os.path.isdir(source):
print ' %s is either not a directory or it does not exist' % source
generate_log(log_name_source, ' %s is either not a directory or it does not exist' % source)
generate_log(log_name_source, 'move.py exit')
def main(args_):
'''
Overly long main function that makes a sidecar manifest.
This needs to get broken up into smaller functions.
'''
parser = argparse.ArgumentParser(description='Generate manifest with'
' checksums for a directory'
' Written by Kieran O\'Leary.')
parser.add_argument(
'source',
help='Input directory'
)
parser.add_argument(
'-s', '-sidecar',
action='store_true',
help='Generates Sidecar'
)
parser.add_argument(
'-f', '-felix',
action='store_true',
help='Felix Meehan workflow - places manifest inside of source directory'
)
parser.add_argument(
'-sha512',
action='store_true',
help='Generates sha512 checksums instead of md5'
)
args = parser.parse_args(args_)
source = args.source
source_parent_dir = os.path.dirname(source)
normpath = os.path.normpath(source)
relative_path = normpath.split(os.sep)[-1]
log_name_source_ = os.path.basename(
args.source
) + time.strftime("_%Y_%m_%dT%H_%M_%S")
if args.s:
if args.sha512:
manifest = source_parent_dir + '/%s_manifest-sha512.txt' % relative_path
else:
manifest = source_parent_dir + '/%s_manifest.md5' % relative_path
log_name_source = source_parent_dir + '/%s.log' % log_name_source_
elif args.f:
if args.sha512:
manifest = source_parent_dir + '/%s_manifest-sha512.txt' % relative_path
else:
manifest = source + '/%s_manifest.md5' % relative_path
log_name_source = source_parent_dir + '/%s.log' % log_name_source_
else:
if args.sha512:
manifest_ = manifest_ = '/%s_manifest-sha512.txt' % relative_path
else:
manifest_ = '/%s_manifest.md5' % relative_path
desktop_manifest_dir = make_desktop_manifest_dir()
manifest = "%s/%s" % (desktop_manifest_dir, manifest_)
desktop_logs_dir = make_desktop_logs_dir()
log_name_source = "%s/%s.log" % (desktop_logs_dir, log_name_source_)
if args.sha512:
module = 'hashlib.sha512'
else:
module = 'hashlib.md5'
generate_log(log_name_source, 'manifest.py started.')
if sys.platform == "win32":
generate_log(
log_name_source,
'EVENT = Generating manifest: status=started, eventType=message digest calculation, module=%s, agent=Windows' % module
)
if sys.platform == "darwin":
generate_log(
log_name_source,
'EVENT = Generating manifest: status=started, eventType=message digest calculation, module=%s, agent=OSX' % module
)
elif sys.platform == "linux2":
generate_log(
log_name_source,
'EVENT = Generating manifest: status=started, eventType=message digest calculation, module=%s, agent=Linux' % module
)
ififuncs.generate_log(
log_name_source,
'eventDetail=manifest.py %s' % ififuncs.get_script_version('manifest.py'))
generate_log(log_name_source, 'Source: %s' % source)
if os.path.isfile(source):
print('\nFile checksum is not currently supported, only directories.\n')
generate_log(log_name_source, 'Error: Attempted to generate manifest for file. Only Directories/Folders are currently supported')
generate_log(log_name_source, 'manifest.py exit')
sys.exit()
elif not os.path.isdir(source):
print((' %s is either not a directory or it does not exist' % source))
generate_log(log_name_source, ' %s is either not a directory or it does not exist' % source)
generate_log(log_name_source, 'manifest.py exit')
sys.exit()
remove_bad_files(source, log_name_source)
source_count = 0
for _, _, filenames in os.walk(source):
# There has to be a better way to count the files..
for _ in filenames:
source_count += 1 #works in windows at least
if os.path.isfile(manifest):
count_in_manifest = manifest_file_count(manifest)
if source_count != count_in_manifest:
print('This manifest may be outdated as the number of files in your directory does not match the number of files in the manifest')
generate_log(log_name_source, 'EVENT = Existing source manifest check - Failure - The number of files in the source directory is not equal to the number of files in the source manifest ')
sys.exit()
if not os.path.isfile(manifest):
try:
print('Generating source manifest')
generate_log(log_name_source, 'EVENT = Generating source manifest')
if args.f:
if args.sha512:
ififuncs.sha512_manifest(source, manifest, source)
else:
hashlib_manifest(source, manifest, source)
shutil.move(log_name_source, source)
else:
if args.sha512:
ififuncs.sha512_manifest(source, manifest, source_parent_dir)
else:
hashlib_manifest(source, manifest, source_parent_dir)
except OSError:
print('You do not have access to this directory. Perhaps it is read only, or the wrong file system\n')
sys.exit()
else:
generate_log(log_name_source, 'EVENT = Existing source manifest check - Source manifest already exists. Script will exit. ')
print(('Manifest created in %s' % manifest))
generate_log(log_name_source, 'Manifest created in %s' % manifest)
return log_name_source
def main(args_):
'''
Batch process packages by running accession.py and makepbcore.py
'''
args = parse_args(args_)
oe_list = []
if args.csv:
for line_item in ififuncs.extract_metadata(args.csv)[0]:
oe_number = line_item['Object Entry'].lower()
# this transforms OE-#### to oe####
transformed_oe = oe_number[:2] + oe_number[3:]
oe_list.append(transformed_oe)
if args.reference:
reference_number = get_filmographic_number(args.reference)
else:
reference_number = ififuncs.get_reference_number()
donor = ififuncs.ask_question(
'Who is the source of acquisition, as appears on the donor agreement? This will not affect Reproductions.'
)
depositor_reference = ififuncs.ask_question(
'What is the donor/depositor number? This will not affect Reproductions.'
)
acquisition_type = ififuncs.get_acquisition_type('')
user = ififuncs.get_user()
accession_number = get_number(args)
accession_digits = int(accession_number[3:])
to_accession = initial_check(args, accession_digits, oe_list,
reference_number)
register = accession.make_register()
if args.csv:
desktop_logs_dir = ififuncs.make_desktop_logs_dir()
if args.dryrun:
new_csv_filename = time.strftime(
"%Y-%m-%dT%H_%M_%S_DRYRUN_SHEET_PLEASE_DO_NOT_INGEST_JUST_IGNORE_COMPLETELY"
) + os.path.basename(args.csv)
else:
new_csv_filename = time.strftime(
"%Y-%m-%dT%H_%M_%S_") + os.path.basename(args.csv)
new_csv = os.path.join(desktop_logs_dir, new_csv_filename)
filmographic_dict, headers = ififuncs.extract_metadata(args.csv)
for oe_package in to_accession:
for filmographic_record in filmographic_dict:
if os.path.basename(oe_package).upper(
)[:2] + '-' + os.path.basename(
oe_package)[2:] == filmographic_record['Object Entry']:
filmographic_record['Reference Number'] = to_accession[
oe_package][1]
with open(new_csv, 'w') as csvfile:
fieldnames = headers
# Removes Object Entry from headings as it's not needed in database.
del fieldnames[1]
writer = csv.DictWriter(csvfile, fieldnames=fieldnames)
writer.writeheader()
for i in filmographic_dict:
i.pop('Object Entry', None)
# Only include records that have reference numbers
if not i['Reference Number'] == '':
writer.writerow(i)
if args.dryrun:
sys.exit()
proceed = ififuncs.ask_yes_no('Do you want to proceed?')
if proceed == 'Y':
for package in sorted(to_accession.keys(), key=natural_keys):
accession_cmd = [
package, '-user', user, '-pbcore', '-f', '-number',
to_accession[package][0], '-reference',
to_accession[package][1], '-register', register, '-csv',
new_csv
]
if len(to_accession[package]) == 3:
accession_cmd.extend(['-acquisition_type', '13'])
accession_cmd.extend(['-parent', order.main(package)])
else:
accession_cmd.extend(['-donor', donor])
accession_cmd.extend(
['-depositor_reference', depositor_reference])
accession_cmd.extend(
['-acquisition_type', acquisition_type[2]])
print accession_cmd
accession.main(accession_cmd)
collated_pbcore = gather_metadata(args.input)
sorted_filepath = ififuncs.sort_csv(register, 'accession number')
print '\nA helper accessions register has been generated in order to help with registration - located here: %s' % sorted_filepath
print '\nA modified filmographic CSV has been generated with added reference numbers - located here: %s' % new_csv
print '\nA collated CSV consisting of each PBCore report has been generated for batch database import - located here: %s' % collated_pbcore
def setup(args_):
'''
Sets a bunch of filename variables and parses command line.
some examples:
if manifest_sidecar = /home/kieranjol/fakeeeeee/fakeeeeee_manifest.md5
then manifes_root = /home/kieranjol/fakeeeeee_manifest.md5
'''
parser = argparse.ArgumentParser(
description='Copy directory with checksum comparison'
'and manifest generation.Written by Kieran O\'Leary.')
parser.add_argument(
'source', help='Input directory'
)
parser.add_argument(
'destination',
help='Destination directory'
)
parser.add_argument(
'-l', '-lto',
action='store_true',
help='use gcp instead of rsync on osx for SPEED on LTO'
)
parser.add_argument(
'-move',
action='store_true',
help='Move files instead of copying - much faster!'
)
rootpos = ''
dircheck = None
args = parser.parse_args(args_)
if os.path.isdir(args.source):
dircheck = check_for_sip(args.source)
if dircheck != None:
if os.path.isdir(dircheck):
source = check_for_sip(args.source)
destination = os.path.join(args.destination, os.path.basename(args.source))
os.makedirs(destination)
else:
source = args.source
destination = args.destination
normpath = os.path.normpath(source)
#is there any benefit to this over os.path.basename
dirname = os.path.split(os.path.basename(source))[1]
if dirname == '':
rootpos = 'y'
dirname = raw_input(
'What do you want your destination folder to be called?\n'
)
relative_path = normpath.split(os.sep)[-1]
# or hardcode
destination_final_path = os.path.join(destination, dirname)
manifest_destination = destination + '/%s_manifest.md5' % dirname
if os.path.isfile(manifest_destination):
print 'Destination manifest already exists'
manifest_filename = '%s_manifest.md5' % dirname
desktop_manifest_dir = make_desktop_manifest_dir()
# manifest = desktop manifest, looks like this can get rewritten later.
manifest = os.path.join(
desktop_manifest_dir, manifest_filename
)
manifest_sidecar = os.path.join(
os.path.dirname(source), relative_path + '_manifest.md5'
)
manifest_root = source + '/%s_manifest.md5' % os.path.basename(source)
log_name_filename = dirname + time.strftime("_%Y_%m_%dT%H_%M_%S")
desktop_logs_dir = make_desktop_logs_dir()
log_name_source = "%s/%s.log" % (desktop_logs_dir, log_name_filename)
generate_log(log_name_source, 'copyit.py started.')
ififuncs.generate_log(
log_name_source,
'eventDetail=copyit.py %s' % ififuncs.get_script_version('copyit.py'))
generate_log(log_name_source, 'Source: %s' % source)
generate_log(log_name_source, 'Destination: %s' % destination)
return args, rootpos, manifest_sidecar, log_name_source, destination_final_path, manifest_root, manifest_destination, manifest, destination, dirname, desktop_manifest_dir
def main(args_):
'''
Batch process packages by running accession.py and makepbcore.py
'''
args = parse_args(args_)
oe_list = []
if args.oe_csv:
if not args.filmographic:
print(' - batchaccession.py - ERROR\n - No -filmographic argument supplied. This is mandatory when using the -oe_csv option. \n - Exiting..')
sys.exit()
oe_csv_extraction = ififuncs.extract_metadata(args.oe_csv)
initial_oe_list = oe_csv_extraction[0]
oe_dicts = process_oe_csv(oe_csv_extraction, args.input)
# temp hack while we're performing both workflows
helper_csv = args.oe_csv
elif args.filmographic:
initial_oe_list = ififuncs.extract_metadata(args.filmographic)[0]
# temp hack while we're performing both workflows
helper_csv = args.filmographic
if args.oe_csv or args.filmographic:
for line_item in ififuncs.extract_metadata(helper_csv)[0]:
try:
oe_number = line_item['Object Entry'].lower()
except KeyError:
oe_number = line_item['OE No.'].lower()
# this transforms OE-#### to oe####
transformed_oe = oe_number[:2] + oe_number[3:]
oe_list.append(transformed_oe)
if not args.oe_csv:
# No need to ask for the reference number if the OE csv option is supplied.
# The assumption here is that the OE csv contains the reference numbers though.
if args.reference:
reference_number = get_filmographic_number(args.reference)
else:
reference_number = ififuncs.get_reference_number()
donor = ififuncs.ask_question('Who is the source of acquisition, as appears on the donor agreement? This will not affect Reproductions.')
depositor_reference = ififuncs.ask_question('What is the donor/depositor number? This will not affect Reproductions.')
acquisition_type = ififuncs.get_acquisition_type('')
user = ififuncs.get_user()
accession_number = get_number(args)
accession_digits = int(accession_number[3:])
if not args.oe_csv:
to_accession = initial_check(args, accession_digits, oe_list, reference_number)
else:
to_accession = {}
for oe_record in oe_dicts:
if os.path.isdir(oe_record['source_path']):
to_accession[oe_record['source_path']] = ['aaa' + str(accession_digits).zfill(4), oe_record['reference number'], oe_record['parent'], oe_record['donation_date']]
accession_digits += 1
for success in sorted(to_accession.keys()):
print('%s will be accessioned as %s' % (success, to_accession[success]))
register = accession.make_register()
if args.filmographic:
desktop_logs_dir = ififuncs.make_desktop_logs_dir()
if args.dryrun:
new_csv_filename = time.strftime("%Y-%m-%dT%H_%M_%S_DRYRUN_SHEET_PLEASE_DO_NOT_INGEST_JUST_IGNORE_COMPLETELY") + os.path.basename(args.filmographic)
else:
new_csv_filename = time.strftime("%Y-%m-%dT%H_%M_%S_") + os.path.basename(args.filmographic)
new_csv = os.path.join(desktop_logs_dir, new_csv_filename)
if not args.oe_csv:
filmographic_dict, headers = ififuncs.extract_metadata(args.filmographic)
for oe_package in to_accession:
for filmographic_record in filmographic_dict:
if os.path.basename(oe_package).upper()[:2] + '-' + os.path.basename(oe_package)[2:] == filmographic_record['Object Entry']:
filmographic_record['Reference Number'] = to_accession[oe_package][1]
get_filmographic_titles(to_accession, filmographic_dict)
with open(new_csv, 'w') as csvfile:
fieldnames = headers
# Removes Object Entry from headings as it's not needed in database.
del fieldnames[1]
writer = csv.DictWriter(csvfile, fieldnames=fieldnames)
writer.writeheader()
for i in filmographic_dict:
i.pop('Object Entry', None)
# Only include records that have reference numbers
if not i['Reference Number'] == '':
writer.writerow(i)
if args.dryrun:
sys.exit()
proceed = ififuncs.ask_yes_no(
'Do you want to proceed?'
)
if args.oe_csv:
new_csv = args.filmographic
if proceed == 'Y':
for package in sorted(to_accession.keys(), key=natural_keys):
accession_cmd = [
package, '-user', user,
'-f',
'-number', to_accession[package][0],
'-reference', to_accession[package][1],
'-register', register,
'-csv', new_csv
]
for oe_record in oe_dicts:
if oe_record['source_path'] == package:
if not oe_record['format'].lower() == 'dcdm':
accession_cmd.append('-pbcore')
if len(to_accession[package]) == 4:
if not to_accession[package][2] == 'n/a':
accession_cmd.extend(['-acquisition_type', '13'])
if args.oe_csv:
accession_cmd.extend(['-parent', to_accession[package][2]])
else:
accession_cmd.extend(['-parent', order.main(package)])
else:
accession_cmd.extend(['-donor', donor])
accession_cmd.extend(['-depositor_reference', depositor_reference])
accession_cmd.extend(['-acquisition_type', acquisition_type[2]])
print to_accession[package][3]
accession_cmd.extend(['-donation_date', to_accession[package][3]])
print accession_cmd
accession.main(accession_cmd)
collated_pbcore = gather_metadata(args.input)
sorted_filepath = ififuncs.sort_csv(register, 'accession number')
print '\nA helper accessions register has been generated in order to help with registration - located here: %s' % sorted_filepath
print '\nA modified filmographic CSV has been generated with added reference numbers - located here: %s' % new_csv
print '\nA collated CSV consisting of each PBCore report has been generated for batch database import - located here: %s' % collated_pbcore
def setup(args_):
'''
Sets a bunch of filename variables and parses command line.
some examples:
if manifest_sidecar = /home/kieranjol/fakeeeeee/fakeeeeee_manifest.md5
then manifes_root = /home/kieranjol/fakeeeeee_manifest.md5
'''
parser = argparse.ArgumentParser(
description='Copy directory with checksum comparison'
'and manifest generation.Written by Kieran O\'Leary.')
parser.add_argument('source', help='Input directory')
parser.add_argument('destination', help='Destination directory')
parser.add_argument(
'-l',
'-lto',
action='store_true',
help='use gcp instead of rsync on osx for SPEED on LTO')
rootpos = ''
dircheck = None
args = parser.parse_args(args_)
if os.path.isdir(args.source):
dircheck = check_for_sip(args.source)
if dircheck != None:
if os.path.isdir(dircheck):
source = check_for_sip(args.source)
destination = os.path.join(args.destination,
os.path.basename(args.source))
os.makedirs(destination)
else:
source = args.source
destination = args.destination
normpath = os.path.normpath(source)
#is there any benefit to this over os.path.basename
dirname = os.path.split(os.path.basename(source))[1]
if dirname == '':
rootpos = 'y'
dirname = raw_input(
'What do you want your destination folder to be called?\n')
relative_path = normpath.split(os.sep)[-1]
# or hardcode
destination_final_path = os.path.join(destination, dirname)
manifest_destination = destination + '/%s_manifest.md5' % dirname
if os.path.isfile(manifest_destination):
print 'Destination manifest already exists'
manifest_filename = '%s_manifest.md5' % dirname
desktop_manifest_dir = make_desktop_manifest_dir()
# manifest = desktop manifest, looks like this can get rewritten later.
manifest = os.path.join(desktop_manifest_dir, manifest_filename)
manifest_sidecar = os.path.join(os.path.dirname(source),
relative_path + '_manifest.md5')
manifest_root = source + '/%s_manifest.md5' % os.path.basename(source)
log_name_filename = dirname + time.strftime("_%Y_%m_%dT%H_%M_%S")
desktop_logs_dir = make_desktop_logs_dir()
log_name_source = "%s/%s.log" % (desktop_logs_dir, log_name_filename)
generate_log(log_name_source, 'copyit.py started.')
ififuncs.generate_log(
log_name_source,
'eventDetail=copyit.py %s' % ififuncs.get_script_version('copyit.py'))
generate_log(log_name_source, 'Source: %s' % source)
generate_log(log_name_source, 'Destination: %s' % destination)
return args, rootpos, manifest_sidecar, log_name_source, destination_final_path, manifest_root, manifest_destination, manifest, destination, dirname, desktop_manifest_dir
make_event(premis, 'message digest calculation', 'Checksum manifest for whole package created', [['UUID','9430725d-7523-4071-9063-e8a6ac4f84c4' ]],final_sip_manifest_uuid,[representation_uuid], 'source', 'now')
make_event(premis, 'message digest calculation', 'Frame level checksums of images', [['UUID','ee83e19e-cdb1-4d83-91fb-7faf7eff738e' ]], framemd5_uuid, [representation_uuid], 'source', 'now' )
write_premis(doc, premisxml)
parser = argparse.ArgumentParser(description='DPX2TIFF specific workflow for IFI'
' Written by Kieran O\'Leary.')
parser.add_argument(
'input', nargs='+',
help='full path of input directory'
)
parser.add_argument(
'-o',
help='full path of output directory', required=True)
args = parser.parse_args()
print args
desktop_logs_dir = make_desktop_logs_dir()
csv_report_filename = os.path.join(desktop_logs_dir, 'dpx_transcode_report' + time.strftime("_%Y_%m_%dT%H_%M_%S") + '.csv')
#permission for correct directories sought from user
permission = ''
all_files = args.input
if not permission == 'y' or permission == 'Y':
print '\n\n**** All TIFF sequences within these directories will be converted to DPX.\n'
for i in all_files:
print i
permission = raw_input('\n**** These are the directories that wil be turned into DPX. \n**** If this looks ok, please press Y, otherwise, type N\n' )
while permission not in ('Y','y','N','n'):
permission = raw_input('\n**** These are the directories that wil be turned into DPX. \n**** If this looks ok, please press Y, otherwise, type N\n')
if permission == 'n' or permission == 'N':
print 'Exiting at your command- Cheerio for now'
sys.exit()