def test_ico():
for float in (False, True):
for crop in (0, 1, 2):
for colors in (0, 1, 3, 4):
fname = fnamebase + '%i.%i.%i.ico' % (float, crop, colors)
rim = get_ref_im(colors, crop, float)
imageio.imsave(fname, rim)
im = imageio.imread(fname)
mul = 255 if float else 1
assert_close(rim * mul, im, 0.1) # lossless
# Meta data
R = imageio.read(fnamebase + '0.0.0.ico')
assert isinstance(R.get_meta_data(0), dict)
assert isinstance(R.get_meta_data(None), dict) # But this print warning
writer = imageio.save(fnamebase + 'I.ico')
writer.set_meta_data({})
writer.close()
# Parameters. Note that with makealpha, RGBA images are read in incorrectly
im = imageio.imread(fnamebase + '0.0.0.ico', makealpha=True)
assert im.ndim == 3 and im.shape[-1] == 4
# Parameter fail
raises(TypeError, imageio.imread, fname, notavalidkwarg=True)
raises(TypeError, imageio.imsave, fnamebase + '1.gif', im, notavalidk=True)
# Multiple images
im = get_ref_im(4, 0, 0)
ims1 = im, np.column_stack([im, im]), np.row_stack([im, im])
imageio.mimsave(fnamebase + 'I.ico', ims1)
ims2 = imageio.mimread(fnamebase + 'I.ico')
for im1, im2 in zip(ims1, ims2):
assert_close(im1, im2, 0.1)
def test_read_and_write():
fname1 = get_remote_file('images/cockatoo.mp4', test_dir)
fname2 = fname1[:-4] + '.out.mp4'
# Read
ims1 = []
with imageio.read(fname1, 'ffmpeg') as R:
for i in range(10):
im = R.get_next_data()
ims1.append(im)
assert im.shape == (720, 1280, 3)
assert (im.sum() / im.size) > 0 # pypy mean is broken
assert im.sum() > 0
# Seek
im = R.get_data(120)
assert im.shape == (720, 1280, 3)
# Save
with imageio.save(fname2, 'ffmpeg') as W:
for im in ims1:
W.append_data(im)
# Read the result
ims2 = imageio.mimread(fname2, 'ffmpeg')
assert len(ims1) == len(ims2)
# Check
for im1, im2 in zip(ims1, ims2):
diff = np.abs(im1.astype(np.float32) - im2.astype(np.float32))
if IS_PYPY:
assert (diff.sum() / diff.size) < 100
else:
assert diff.mean() < 2.0
def write_gif_with_image_io(clip,
filename,
fps=None,
opt=0,
loop=0,
colors=None,
logger="bar"):
"""Writes the gif with the Python library ImageIO (calls FreeImage)."""
if colors is None:
colors = 256
logger = proglog.default_bar_logger(logger)
if not IMAGEIO_FOUND:
raise ImportError(
"Writing a gif with imageio requires ImageIO installed,"
" with e.g. 'pip install imageio'")
if fps is None:
fps = clip.fps
quantizer = 0 if opt != 0 else "nq"
writer = imageio.save(filename,
duration=1.0 / fps,
quantizer=quantizer,
palettesize=colors,
loop=loop)
logger(message="MoviePy - Building file %s with imageio." % filename)
for frame in clip.iter_frames(fps=fps, logger=logger, dtype="uint8"):
writer.append_data(frame)
def write_gif_with_image_io(clip, filename, fps=None, opt='wu', loop=0,
colors=None, verbose=True):
"""
Writes the gif with the Python library ImageIO (calls FreeImage).
For the moment ImageIO is not installed with CartoonPy. You need to install
imageio (pip install imageio) to use this.
Parameters
-----------
opt
"""
if colors is None:
colors=256
if not IMAGEIO_FOUND:
raise ImportError("Writing a gif with imageio requires ImageIO installed,"
" with e.g. 'pip install imageio'")
if fps is None:
fps = clip.fps
quantizer = 'wu' if opt!= 'nq' else 'nq'
writer = imageio.save(filename, duration=1.0/fps,
quantizer=quantizer, palettesize=colors)
verbose_print(verbose, "\n[CartoonPy] Building file %s with imageio\n"%filename)
for frame in clip.iter_frames(fps=fps, progress_bar=True, dtype='uint8'):
writer.append_data(frame)
def write_gif_with_image_io(clip, filename, fps=None, opt="wu", loop=0, colors=None, verbose=True):
"""
Writes the gif with the Python library ImageIO (calls FreeImage).
For the moment ImageIO is not installed with MoviePy. You need to install
imageio (pip install imageio) to use this.
Parameters
-----------
opt
"""
if colors is None:
colors = 256
if not IMAGEIO_FOUND:
raise ImportError("Writing a gif with imageio requires ImageIO installed," " with e.g. 'pip install imageio'")
if fps is None:
fps = clip.fps
quantizer = "wu" if opt != "nq" else "nq"
writer = imageio.save(filename, duration=1.0 / fps, quantizer=quantizer, palettesize=colors)
verbose_print(verbose, "\n[MoviePy] Building file %s with imageio\n" % filename)
for frame in clip.iter_frames(fps=fps, progress_bar=True, dtype="uint8"):
writer.append_data(frame)
def test_write_not_contiguous():
R = imageio.read(get_remote_file("images/cockatoo.mp4"), "ffmpeg")
assert R.format is imageio.formats["ffmpeg"]
fname1 = get_remote_file("images/cockatoo.mp4", test_dir)
fname2 = fname1[:-4] + ".out.mp4"
# Read
ims1 = []
with imageio.read(fname1, "ffmpeg") as R:
for i in range(10):
im = R.get_next_data()
ims1.append(im)
# Save non contiguous data
with imageio.save(fname2, "ffmpeg") as W:
for im in ims1:
# DOn't slice the first dimension since it won't be
# a multiple of 16. This will cause the writer to expand
# the data to make it fit, we won't be able to compare
# the difference between the saved and the original images.
im = im[:, ::2]
assert not im.flags.c_contiguous
W.append_data(im)
ims2 = imageio.mimread(fname2, "ffmpeg")
# Check
for im1, im2 in zip(ims1, ims2):
diff = np.abs(im1[:, ::2].astype(np.float32) - im2.astype(np.float32))
if IS_PYPY:
assert (diff.sum() / diff.size) < 100
else:
assert diff.mean() < 2.5
def test_simpleitk_reading_writing():
""" Test reading and saveing tiff """
im2 = np.ones((10, 10, 3), np.uint8) * 2
filename1 = os.path.join(test_dir, 'test_tiff.tiff')
# One image
imageio.imsave(filename1, im2, 'itk')
im = imageio.imread(filename1, 'itk')
ims = imageio.mimread(filename1, 'itk')
assert (im == im2).all()
assert len(ims) == 1
# Mixed
W = imageio.save(filename1, 'itk')
raises(RuntimeError, W.set_meta_data, 1)
assert W.format.name == 'ITK'
W.append_data(im2)
W.append_data(im2)
W.close()
#
R = imageio.read(filename1, 'itk')
assert R.format.name == 'ITK'
ims = list(R) # == [im for im in R]
assert (ims[0] == im2).all()
# Fail
raises(IndexError, R.get_data, -1)
raises(IndexError, R.get_data, 3)
raises(RuntimeError, R.get_meta_data)
def test_write_not_contiguous():
R = imageio.read(get_remote_file("images/cockatoo.mp4"), "ffmpeg")
assert R.format is imageio.formats["ffmpeg"]
fname1 = get_remote_file("images/cockatoo.mp4", test_dir)
fname2 = fname1[:-4] + ".out.mp4"
# Read
ims1 = []
with imageio.read(fname1, "ffmpeg") as R:
for i in range(10):
im = R.get_next_data()
ims1.append(im)
# Save non contiguous data
with imageio.save(fname2, "ffmpeg") as W:
for im in ims1:
# DOn't slice the first dimension since it won't be
# a multiple of 16. This will cause the writer to expand
# the data to make it fit, we won't be able to compare
# the difference between the saved and the original images.
im = im[:, ::2]
assert not im.flags.c_contiguous
W.append_data(im)
ims2 = imageio.mimread(fname2, "ffmpeg")
# Check
for im1, im2 in zip(ims1, ims2):
diff = np.abs(im1[:, ::2].astype(np.float32) - im2.astype(np.float32))
if IS_PYPY:
assert (diff.sum() / diff.size) < 100
else:
assert diff.mean() < 2.5
def test_simpleitk_reading_writing():
""" Test reading and saveing tiff """
im2 = np.ones((10, 10, 3), np.uint8) * 2
filename1 = os.path.join(test_dir, "test_tiff.tiff")
# One image
imageio.imsave(filename1, im2, "itk")
im = imageio.imread(filename1, "itk")
print(im.shape)
ims = imageio.mimread(filename1, "itk")
print(im2.shape)
assert (im == im2).all()
assert len(ims) == 1
# Mixed
W = imageio.save(filename1, "itk")
raises(RuntimeError, W.set_meta_data, 1)
assert W.format.name == "ITK"
W.append_data(im2)
W.append_data(im2)
W.close()
#
R = imageio.read(filename1, "itk")
assert R.format.name == "ITK"
ims = list(R) # == [im for im in R]
assert (ims[0] == im2).all()
# Fail
raises(IndexError, R.get_data, -1)
raises(IndexError, R.get_data, 3)
raises(RuntimeError, R.get_meta_data)
def write_gif_with_image_io(clip, filename, fps=None, opt=0, loop=0,
colors=None, verbose=True, progress_bar=True,
progress_cb=None):
"""
Writes the gif with the Python library ImageIO (calls FreeImage).
Parameters
-----------
opt
progress_bar
Boolean indicating whether to display a progress bar in the terminal
while exporting the file.
progress_cb
Callback function to call during export. It should accept
the current frame index being exported and the total number
of frames. It can be used to update a gui progressbar while
running in a separate thread.
"""
if colors is None:
colors = 256
if not IMAGEIO_FOUND:
raise ImportError("Writing a gif with imageio requires ImageIO installed,"
" with e.g. 'pip install imageio'")
if fps is None:
fps = clip.fps
quantizer = 0 if opt != 0 else 'nq'
writer = imageio.save(
filename,
duration=1.0/fps,
quantizer=quantizer,
palettesize=colors,
loop=loop
)
verbose_print(verbose, "\n[MoviePy] Building file %s with imageio\n" % filename)
# if progress callback was define, call it
if callable(progress_cb):
nframes = int(clip.duration*fps)+1
count = 1
for frame in clip.iter_frames(fps=fps, progress_bar=progress_bar, dtype='uint8'):
writer.append_data(frame)
# if progress callback was define, call it
if callable(progress_cb):
progress_cb(count, nframes)
count += 1
def test_animated_gif():
# Get images
im = get_ref_im(4, 0, 0)
ims = []
for i in range(10):
im = im.copy()
im[:, -5:, 0] = i * 20
ims.append(im)
# Store - animated GIF always poops out RGB
for float in (False, True):
for colors in (3, 4):
ims1 = ims[:]
if float:
ims1 = [x.astype(np.float32) / 256 for x in ims1]
ims1 = [x[:, :, :colors] for x in ims1]
fname = fnamebase + '.animated.%i.gif' % colors
imageio.mimsave(fname, ims1, duration=0.2)
# Retrieve
ims2 = imageio.mimread(fname)
ims1 = [x[:, :, :3] for x in ims] # fresh ref
ims2 = [x[:, :, :3] for x in ims2] # discart alpha
for im1, im2 in zip(ims1, ims2):
assert_close(im1, im2, 1.1)
# We can also store grayscale
fname = fnamebase + '.animated.%i.gif' % 1
imageio.mimsave(fname, [x[:, :, 0] for x in ims], duration=0.2)
imageio.mimsave(fname, [x[:, :, :1] for x in ims], duration=0.2)
# Irragular duration. You probably want to check this manually (I did)
duration = [0.1 for i in ims]
for i in [2, 5, 7]:
duration[i] = 0.5
imageio.mimsave(fnamebase + '.animated_irr.gif', ims, duration=duration)
# Other parameters
imageio.mimsave(fnamebase + '.animated.loop2.gif', ims, loop=2)
R = imageio.read(fnamebase + '.animated.loop2.gif')
W = imageio.save(fnamebase + '.animated.palettes100.gif', palettesize=100)
assert W._palettesize == 128
# Fail
raises(IndexError, R.get_meta_data, -1)
raises(ValueError, imageio.mimsave, fname, ims, palettesize=300)
raises(ValueError, imageio.mimsave, fname, ims, quantizer='foo')
raises(ValueError, imageio.mimsave, fname, ims, duration='foo')
# Test subrectangles
imageio.mimsave(fnamebase + '.subno.gif', ims, subrectangles=False)
imageio.mimsave(fnamebase + '.subyes.gif', ims, subrectangles=True)
s1 = os.stat(fnamebase + '.subno.gif').st_size
s2 = os.stat(fnamebase + '.subyes.gif').st_size
assert s2 < s1
# Meta (dummy, because always {}
assert isinstance(imageio.read(fname).get_meta_data(), dict)
def test_format_selection(test_images):
fname1 = test_images / "stent.swf"
fname2 = fname1.with_suffix(".out.swf")
F = imageio.formats["swf"]
assert F.name == "SWF"
assert type(imageio.formats[".swf"]) is type(F)
assert type(imageio.read(fname1).format) is type(F)
assert type(imageio.save(fname2).format) is type(F)
def test_format_selection():
fname1 = get_remote_file('images/stent.swf', test_dir)
fname2 = fname1[:-4] + '.out.swf'
F = imageio.formats['swf']
assert F.name == 'SWF'
assert imageio.formats['.swf'] is F
assert imageio.read(fname1).format is F
assert imageio.save(fname2).format is F
def test_format_selection():
fname1 = get_remote_file('images/stent.swf', test_dir)
fname2 = fname1[:-4] + '.out.swf'
F = imageio.formats['swf']
assert F.name == 'SWF'
assert imageio.formats['.swf'] is F
assert imageio.read(fname1).format is F
assert imageio.save(fname2).format is F
def make_gif_kegg(path_id, entry_items, color_list, label_list=None, etype ='gene'):
pathway_image, content_xml = get_req_xml_kegg(path_id)
entity_graphic_dict = parse_entitys_dict(get_xml_element_of_kegg(content_xml))
target_list = [i for i in \
extract_graphic_entity(entry_items, color_list, entity_graphic_dict, etype, label_list)]
del entity_graphic_dict
movie = imageio.save(path_id + '.gif', fps=25)
gif_make(movie, pathway_image, target_list, duration=13)
del movie
def test_npz_reading_writing():
""" Test reading and saveing npz """
if IS_PYPY:
return # no support for npz format :(
im2 = np.ones((10, 10), np.uint8) * 2
im3 = np.ones((10, 10, 10), np.uint8) * 3
im4 = np.ones((10, 10, 10, 10), np.uint8) * 4
filename1 = os.path.join(test_dir, 'test_npz.npz')
# One image
imageio.imsave(filename1, im2)
im = imageio.imread(filename1)
ims = imageio.mimread(filename1)
assert (im == im2).all()
assert len(ims) == 1
# Multiple images
imageio.mimsave(filename1, [im2, im2, im2])
im = imageio.imread(filename1)
ims = imageio.mimread(filename1)
assert (im == im2).all()
assert len(ims) == 3
# Volumes
imageio.mvolsave(filename1, [im3, im3])
im = imageio.volread(filename1)
ims = imageio.mvolread(filename1)
assert (im == im3).all()
assert len(ims) == 2
# Mixed
W = imageio.save(filename1)
assert W.format.name == 'NPZ'
W.append_data(im2)
W.append_data(im3)
W.append_data(im4)
raises(RuntimeError, W.set_meta_data, {}) # no meta data support
W.close()
#
R = imageio.read(filename1)
assert R.format.name == 'NPZ'
ims = list(R) # == [im for im in R]
assert (ims[0] == im2).all()
assert (ims[1] == im3).all()
assert (ims[2] == im4).all()
# Fail
raises(IndexError, R.get_data, -1)
raises(IndexError, R.get_data, 3)
raises(RuntimeError, R.get_meta_data, None) # no meta data support
raises(RuntimeError, R.get_meta_data, 0) # no meta data support
def test_tifffile_reading_writing():
""" Test reading and saveing tiff """
need_internet() # We keep a test image in the imageio-binary repo
im2 = np.ones((10, 10, 3), np.uint8) * 2
filename1 = os.path.join(test_dir, 'test_tiff.tiff')
# One image
imageio.imsave(filename1, im2)
im = imageio.imread(filename1)
ims = imageio.mimread(filename1)
assert (im == im2).all()
assert len(ims) == 1
# Multiple images
imageio.mimsave(filename1, [im2, im2, im2])
im = imageio.imread(filename1)
ims = imageio.mimread(filename1)
assert (im == im2).all()
assert len(ims) == 3, ims[0].shape
# remote multipage rgb file
filename2 = get_remote_file('images/multipage_rgb.tif')
img = imageio.mimread(filename2)
assert len(img) == 2
assert img[0].shape == (3, 10, 10)
# Mixed
W = imageio.save(filename1)
W.set_meta_data({'planarconfig': 'planar'})
assert W.format.name == 'TIFF'
W.append_data(im2)
W.append_data(im2)
W.close()
#
R = imageio.read(filename1)
assert R.format.name == 'TIFF'
ims = list(R) # == [im for im in R]
assert (ims[0] == im2).all()
meta = R.get_meta_data()
assert meta['is_rgb']
# Fail
raises(IndexError, R.get_data, -1)
raises(IndexError, R.get_data, 3)
# Ensure imwrite write works round trip
filename3 = os.path.join(test_dir, 'test_tiff2.tiff')
R = imageio.imread(filename1)
imageio.imwrite(filename3, R)
R2 = imageio.imread(filename3)
assert (R == R2).all()
def test_tifffile_reading_writing():
""" Test reading and saving tiff """
need_internet() # We keep a test image in the imageio-binary repo
im2 = np.ones((10, 10, 3), np.uint8) * 2
filename1 = os.path.join(test_dir, 'test_tiff.tiff')
# One image
imageio.imsave(filename1, im2)
im = imageio.imread(filename1)
ims = imageio.mimread(filename1)
assert (im == im2).all()
assert len(ims) == 1
# Multiple images
imageio.mimsave(filename1, [im2, im2, im2])
im = imageio.imread(filename1)
ims = imageio.mimread(filename1)
assert (im == im2).all()
assert len(ims) == 3, ims[0].shape
# remote multipage rgb file
filename2 = get_remote_file('images/multipage_rgb.tif')
img = imageio.mimread(filename2)
assert len(img) == 2
assert img[0].shape == (3, 10, 10)
# Mixed
W = imageio.save(filename1)
W.set_meta_data({'planarconfig': 'planar'})
assert W.format.name == 'TIFF'
W.append_data(im2)
W.append_data(im2)
W.close()
#
R = imageio.read(filename1)
assert R.format.name == 'TIFF'
ims = list(R) # == [im for im in R]
assert (ims[0] == im2).all()
meta = R.get_meta_data()
assert meta['orientation'] == 'top_left'
# Fail
raises(IndexError, R.get_data, -1)
raises(IndexError, R.get_data, 3)
# Ensure imwrite write works round trip
filename3 = os.path.join(test_dir, 'test_tiff2.tiff')
R = imageio.imread(filename1)
imageio.imwrite(filename3, R)
R2 = imageio.imread(filename3)
assert (R == R2).all()
def test_npz_reading_writing(tmp_path):
"""Test reading and saveing npz"""
if IS_PYPY:
return # no support for npz format :(
im2 = np.ones((10, 10), np.uint8) * 2
im3 = np.ones((10, 10, 10), np.uint8) * 3
im4 = np.ones((10, 10, 10, 10), np.uint8) * 4
filename1 = tmp_path / "test_npz.npz"
# One image
imageio.imsave(filename1, im2)
im = imageio.imread(filename1)
ims = imageio.mimread(filename1)
assert (im == im2).all()
assert len(ims) == 1
# Multiple images
imageio.mimsave(filename1, [im2, im2, im2])
im = imageio.imread(filename1)
ims = imageio.mimread(filename1)
assert (im == im2).all()
assert len(ims) == 3
# Volumes
imageio.mvolsave(filename1, [im3, im3])
im = imageio.volread(filename1)
ims = imageio.mvolread(filename1)
assert (im == im3).all()
assert len(ims) == 2
# Mixed
W = imageio.save(filename1)
assert W.format.name == "NPZ"
W.append_data(im2)
W.append_data(im3)
W.append_data(im4)
pytest.raises(RuntimeError, W.set_meta_data, {}) # no meta data support
W.close()
#
R = imageio.read(filename1)
assert R.format.name == "NPZ"
ims = list(R) # == [im for im in R]
assert (ims[0] == im2).all()
assert (ims[1] == im3).all()
assert (ims[2] == im4).all()
# Fail
pytest.raises(IndexError, R.get_data, -1)
pytest.raises(IndexError, R.get_data, 3)
pytest.raises(RuntimeError, R.get_meta_data, None) # no meta data support
pytest.raises(RuntimeError, R.get_meta_data, 0) # no meta data support
def test_format_selection():
need_internet()
fname1 = get_remote_file("images/stent.swf", test_dir)
fname2 = fname1[:-4] + ".out.swf"
F = imageio.formats["swf"]
assert F.name == "SWF"
assert imageio.formats[".swf"] is F
assert imageio.read(fname1).format is F
assert imageio.save(fname2).format is F
def test_format_selection():
need_internet()
fname1 = get_remote_file("images/stent.swf", test_dir)
fname2 = fname1[:-4] + ".out.swf"
F = imageio.formats["swf"]
assert F.name == "SWF"
assert imageio.formats[".swf"] is F
assert imageio.read(fname1).format is F
assert imageio.save(fname2).format is F
def test_read_and_write():
need_internet()
R = imageio.read(get_remote_file('images/cockatoo.mp4'), 'ffmpeg')
assert R.format is imageio.formats['ffmpeg']
fname1 = get_remote_file('images/cockatoo.mp4', test_dir)
fname2 = fname1[:-4] + '.out.mp4'
# Read
ims1 = []
with imageio.read(fname1, 'ffmpeg') as R:
for i in range(10):
im = R.get_next_data()
ims1.append(im)
assert im.shape == (720, 1280, 3)
assert (im.sum() / im.size) > 0 # pypy mean is broken
assert im.sum() > 0
# Get arbitrary data
im1 = R.get_data(120)
assert im1.shape == (720, 1280, 3)
# Set image index
R.set_image_index(42)
im2 = R.get_next_data()
assert im2.shape == (720, 1280, 3)
R.set_image_index(120)
im3 = R.get_next_data()
assert im3.shape == (720, 1280, 3)
assert (im1 == im3).all()
assert not (im1 == im2).all()
# Save
with imageio.save(fname2, 'ffmpeg') as W:
for im in ims1:
W.append_data(im)
# Read the result
ims2 = imageio.mimread(fname2, 'ffmpeg')
assert len(ims1) == len(ims2)
# Check
for im1, im2 in zip(ims1, ims2):
diff = np.abs(im1.astype(np.float32) - im2.astype(np.float32))
if IS_PYPY:
assert (diff.sum() / diff.size) < 100
else:
assert diff.mean() < 2.5
def test_writer_more():
fname1 = get_remote_file('images/cockatoo.mp4', test_dir)
fname2 = fname1[:-4] + '.out.mp4'
W = imageio.save(fname2, 'ffmpeg')
with raises(ValueError): # Invalid shape
W.append_data(np.zeros((20, 20, 5), np.uint8))
W.append_data(np.zeros((20, 20, 3), np.uint8))
with raises(ValueError): # Different shape from first image
W.append_data(np.zeros((20, 19, 3), np.uint8))
with raises(ValueError): # Different depth from first image
W.append_data(np.zeros((20, 20, 4), np.uint8))
with raises(RuntimeError): # No meta data
W.set_meta_data({'foo': 3})
W.close()
def test_writer_more():
fname1 = get_remote_file("images/cockatoo.mp4", test_dir)
fname2 = fname1[:-4] + ".out.mp4"
W = imageio.save(fname2, "ffmpeg")
with raises(ValueError): # Invalid shape
W.append_data(np.zeros((20, 20, 5), np.uint8))
W.append_data(np.zeros((20, 20, 3), np.uint8))
with raises(ValueError): # Different shape from first image
W.append_data(np.zeros((20, 19, 3), np.uint8))
with raises(ValueError): # Different depth from first image
W.append_data(np.zeros((20, 20, 4), np.uint8))
with raises(RuntimeError): # No meta data
W.set_meta_data({"foo": 3})
W.close()
def test_writer_more(test_images):
fname1 = test_images / "cockatoo.mp4"
fname2 = fname1.with_suffix(".out.mp4")
W = imageio.save(fname2, "ffmpeg")
with pytest.raises(ValueError): # Invalid shape
W.append_data(np.zeros((20, 20, 5), np.uint8))
W.append_data(np.zeros((20, 20, 3), np.uint8))
with pytest.raises(ValueError): # Different shape from first image
W.append_data(np.zeros((20, 19, 3), np.uint8))
with pytest.raises(ValueError): # Different depth from first image
W.append_data(np.zeros((20, 20, 4), np.uint8))
with pytest.raises(RuntimeError): # No meta data
W.set_meta_data({"foo": 3})
W.close()
def test_ico():
if os.getenv("TRAVIS", "") == "true" and sys.version_info >= (3, 4):
skip("Freeimage ico is unstable for this Travis build")
for float in (False, True):
for crop in (0,):
for colors in (1, 3, 4):
fname = fnamebase + "%i.%i.%i.ico" % (float, crop, colors)
rim = get_ref_im(colors, crop, float)
rim = rim[:32, :32] # ico needs nice size
imageio.imsave(fname, rim)
im = imageio.imread(fname)
mul = 255 if float else 1
assert_close(rim * mul, im, 0.1) # lossless
# Meta data
R = imageio.read(fnamebase + "0.0.1.ico")
assert isinstance(R.get_meta_data(0), dict)
assert isinstance(R.get_meta_data(None), dict) # But this print warning
R.close()
writer = imageio.save(fnamebase + "I.ico")
writer.set_meta_data({})
writer.close()
# Parameters. Note that with makealpha, RGBA images are read in incorrectly
im = imageio.imread(fnamebase + "0.0.1.ico", makealpha=True)
assert im.ndim == 3 and im.shape[-1] == 4
# Parameter fail
raises(TypeError, imageio.imread, fname, notavalidkwarg=True)
raises(TypeError, imageio.imsave, fnamebase + "1.gif", im, notavalidk=True)
if sys.platform.startswith("win"): # issue #21
skip("Windows has a known issue with multi-icon files")
# Multiple images
im = get_ref_im(4, 0, 0)[:32, :32]
ims = [np.repeat(np.repeat(im, i, 1), i, 0) for i in (1, 2)] # SegF on win
ims = im, np.column_stack((im, im)), np.row_stack((im, im)) # error on win
imageio.mimsave(fnamebase + "I2.ico", ims)
ims2 = imageio.mimread(fnamebase + "I2.ico")
for im1, im2 in zip(ims, ims2):
assert_close(im1, im2, 0.1)
def test_ico(setup_library, tmp_path):
fnamebase = str(tmp_path / "test")
for isfloat in (False, True):
for crop in (0, ):
for colors in (1, 3, 4):
fname = fnamebase + "%i.%i.%i.ico" % (isfloat, crop, colors)
rim = get_ref_im(colors, crop, isfloat)
rim = rim[:32, :32] # ico needs nice size
imageio.imsave(fname, rim, format="ICO-FI")
im = imageio.imread(fname, format="ICO-FI")
mul = 255 if isfloat else 1
assert_close(rim * mul, im, 0.1) # lossless
# Meta data
R = imageio.read(fnamebase + "0.0.1.ico", format="ICO-FI")
assert isinstance(R.get_meta_data(0), dict)
assert isinstance(R.get_meta_data(None), dict) # But this print warning
R.close()
writer = imageio.save(fnamebase + "I.ico", format="ICO-FI")
writer.set_meta_data({})
writer.close()
# Parameters. Note that with makealpha, RGBA images are read in incorrectly
im = imageio.imread(fnamebase + "0.0.1.ico",
makealpha=True,
format="ICO-FI")
assert im.ndim == 3 and im.shape[-1] == 4
# Parameter fail
raises(TypeError,
imageio.imread,
fname,
notavalidkwarg=True,
format="ICO-FI")
raises(
TypeError,
imageio.imsave,
fnamebase + "1.ico",
im,
notavalidk=True,
format="ICO-FI",
)
def test_ico():
if os.getenv('TRAVIS', '') == 'true' and sys.version_info >= (3, 4):
skip('Freeimage ico is unstable for this Travis build')
for isfloat in (False, True):
for crop in (0, ):
for colors in (1, 3, 4):
fname = fnamebase + '%i.%i.%i.ico' % (isfloat, crop, colors)
rim = get_ref_im(colors, crop, isfloat)
rim = rim[:32, :32] # ico needs nice size
imageio.imsave(fname, rim)
im = imageio.imread(fname)
mul = 255 if isfloat else 1
assert_close(rim * mul, im, 0.1) # lossless
# Meta data
R = imageio.read(fnamebase + '0.0.1.ico')
assert isinstance(R.get_meta_data(0), dict)
assert isinstance(R.get_meta_data(None), dict) # But this print warning
R.close()
writer = imageio.save(fnamebase + 'I.ico')
writer.set_meta_data({})
writer.close()
# Parameters. Note that with makealpha, RGBA images are read in incorrectly
im = imageio.imread(fnamebase + '0.0.1.ico', makealpha=True)
assert im.ndim == 3 and im.shape[-1] == 4
# Parameter fail
raises(TypeError, imageio.imread, fname, notavalidkwarg=True)
raises(TypeError, imageio.imsave, fnamebase + '1.gif', im, notavalidk=True)
if sys.platform.startswith('win'): # issue #21
skip('Windows has a known issue with multi-icon files')
# Multiple images
im = get_ref_im(4, 0, 0)[:32, :32]
ims = [np.repeat(np.repeat(im, i, 1), i, 0) for i in (1, 2)] # SegF on win
ims = im, np.column_stack((im, im)), np.row_stack((im, im)) # error on win
imageio.mimsave(fnamebase + 'I2.ico', ims)
ims2 = imageio.mimread(fnamebase + 'I2.ico')
for im1, im2 in zip(ims, ims2):
assert_close(im1, im2, 0.1)
def test_read_and_write():
fname1 = get_remote_file('images/cockatoo.mp4', test_dir)
fname2 = fname1[:-4] + '.out.mp4'
# Read
ims1 = []
with imageio.read(fname1, 'ffmpeg') as R:
for i in range(10):
im = R.get_next_data()
ims1.append(im)
assert im.shape == (720, 1280, 3)
assert im.sum() > 0
# Seek
im = R.get_data(120)
assert im.shape == (720, 1280, 3)
# Save
with imageio.save(fname2, 'ffmpeg') as W:
for im in ims1:
W.append_data(im)
# Read the result
ims2 = imageio.mimread(fname2, 'ffmpeg')
assert len(ims1) == len(ims2)
# Check
for im1, im2 in zip(ims1, ims2):
diff = np.abs(im1.astype(np.float32) - im2.astype(np.float32))
assert diff.mean() < 2.0
# Check loop
R = imageio.read(fname2, 'ffmpeg', loop=True)
im1 = R.get_next_data()
for i in range(1, len(R)):
R.get_next_data()
im2 = R.get_next_data()
im3 = R.get_data(0)
im4 = R.get_data(2) # touch skipping frames
assert (im1 == im2).all()
assert (im1 == im3).all()
assert not (im1 == im4).all()
R.close()
def convert(filename, resolution, fps, filetype):
"""
Converts a recorded .golf file into a video.
"""
print(f'Converting {filename}...')
with imageio.save(f'{filename.replace(GOLFR_EXTENSION, "")}.{filetype}', fps=fps) as writer:
with open(filename, mode='r') as f:
lines = f.readlines()
if len(lines) < 2:
print(f"Error detected in {filename}")
return
size = int(lines[0])
image = np.empty(size * size, dtype=np.uint8)
for line in tqdm(lines):
image.fill(255)
image[np.fromstring(line, dtype=np.int32, sep=',')] = 0
writer.append_data(
np.repeat(np.repeat(image.reshape((size, size)), resolution, axis=1), resolution, axis=0)
)
def test_tifffile_reading_writing():
""" Test reading and saveing tiff """
im2 = np.ones((10, 10, 3), np.uint8) * 2
filename1 = os.path.join(test_dir, "test_tiff.tiff")
# One image
imageio.imsave(filename1, im2)
im = imageio.imread(filename1)
ims = imageio.mimread(filename1)
assert (im == im2).all()
assert len(ims) == 1
# Multiple images
imageio.mimsave(filename1, [im2, im2, im2])
im = imageio.imread(filename1)
ims = imageio.mimread(filename1)
assert (im == im2).all()
assert len(ims) == 3, ims[0].shape
# remote multipage rgb file
filename2 = get_remote_file("images/multipage_rgb.tif")
img = imageio.mimread(filename2)
assert len(img) == 2
assert img[0].shape == (3, 10, 10)
# Mixed
W = imageio.save(filename1)
W.set_meta_data({"planarconfig": "planar"})
assert W.format.name == "TIFF"
W.append_data(im2)
W.append_data(im2)
W.close()
#
R = imageio.read(filename1)
assert R.format.name == "TIFF"
ims = list(R) # == [im for im in R]
assert (ims[0] == im2).all()
meta = R.get_meta_data()
assert meta["is_rgb"]
# Fail
raises(IndexError, R.get_data, -1)
raises(IndexError, R.get_data, 3)
def test_ico():
for float in (False, True):
for crop in (0, 1, 2):
for colors in (1, 3, 4):
fname = fnamebase + '%i.%i.%i.ico' % (float, crop, colors)
rim = get_ref_im(colors, crop, float)
imageio.imsave(fname, rim)
im = imageio.imread(fname)
mul = 255 if float else 1
assert_close(rim * mul, im, 0.1) # lossless
# Meta data
R = imageio.read(fnamebase + '0.0.1.ico')
assert isinstance(R.get_meta_data(0), dict)
assert isinstance(R.get_meta_data(None), dict) # But this print warning
R.close()
writer = imageio.save(fnamebase + 'I.ico')
writer.set_meta_data({})
writer.close()
# Parameters. Note that with makealpha, RGBA images are read in incorrectly
im = imageio.imread(fnamebase + '0.0.1.ico', makealpha=True)
assert im.ndim == 3 and im.shape[-1] == 4
# Parameter fail
raises(TypeError, imageio.imread, fname, notavalidkwarg=True)
raises(TypeError, imageio.imsave, fnamebase + '1.gif', im, notavalidk=True)
if sys.platform.startswith('win'): # issue #21
skip('Windows has a known issue with multi-icon files')
# Multiple images
im = get_ref_im(4, 0, 0)
ims = [np.repeat(np.repeat(im, i, 1), i, 0) for i in (1, 2)] # SegF on win
ims = im, np.column_stack((im, im)), np.row_stack((im, im)) # error on win
imageio.mimsave(fnamebase + 'I2.ico', ims)
ims2 = imageio.mimread(fnamebase + 'I2.ico')
for im1, im2 in zip(ims, ims2):
assert_close(im1, im2, 0.1)
def test_read_and_write():
need_internet()
R = imageio.read(get_remote_file('images/cockatoo.mp4'), 'ffmpeg')
assert R.format is imageio.formats['ffmpeg']
fname1 = get_remote_file('images/cockatoo.mp4', test_dir)
fname2 = fname1[:-4] + '.out.mp4'
# Read
ims1 = []
with imageio.read(fname1, 'ffmpeg') as R:
for i in range(10):
im = R.get_next_data()
ims1.append(im)
assert im.shape == (720, 1280, 3)
assert (im.sum() / im.size) > 0 # pypy mean is broken
assert im.sum() > 0
# Seek
im = R.get_data(120)
assert im.shape == (720, 1280, 3)
# Save
with imageio.save(fname2, 'ffmpeg') as W:
for im in ims1:
W.append_data(im)
# Read the result
ims2 = imageio.mimread(fname2, 'ffmpeg')
assert len(ims1) == len(ims2)
# Check
for im1, im2 in zip(ims1, ims2):
diff = np.abs(im1.astype(np.float32) - im2.astype(np.float32))
if IS_PYPY:
assert (diff.sum() / diff.size) < 100
else:
assert diff.mean() < 2.5
def write_gif_with_image_io(clip, filename, fps=None, opt=0, loop=0,
colors=None, verbose=True, logger='bar'):
"""
Writes the gif with the Python library ImageIO (calls FreeImage).
Parameters
-----------
opt
"""
if colors is None:
colors = 256
logger = proglog.default_bar_logger(logger)
if not IMAGEIO_FOUND:
error = ImportError("Writing a gif with imageio requires ImageIO installed,"
" with e.g. 'pip install imageio'")
logger.error(error)
raise error
if fps is None:
fps = clip.fps
quantizer = 0 if opt != 0 else 'nq'
writer = imageio.save(
filename,
duration=1.0/fps,
quantizer=quantizer,
palettesize=colors,
loop=loop
)
logger.info(msg='MoviePy - Building file %s with imageio.' % filename)
for frame in clip.iter_frames(fps=fps, logger=logger, dtype='uint8'):
writer.append_data(frame)
def write_gif_with_image_io(clip, filename, fps=None, opt=0, loop=0,
colors=None, verbose=True, logger='bar'):
"""
Writes the gif with the Python library ImageIO (calls FreeImage).
Parameters
-----------
opt
"""
if colors is None:
colors = 256
logger = proglog.default_bar_logger(logger)
if not IMAGEIO_FOUND:
raise ImportError("Writing a gif with imageio requires ImageIO installed,"
" with e.g. 'pip install imageio'")
if fps is None:
fps = clip.fps
quantizer = 0 if opt != 0 else 'nq'
writer = imageio.save(
filename,
duration=1.0/fps,
quantizer=quantizer,
palettesize=colors,
loop=loop
)
logger(message='MoviePy - Building file %s with imageio.' % filename)
for frame in clip.iter_frames(fps=fps, logger=logger, dtype='uint8'):
writer.append_data(frame)
def test_functions():
""" Test the user-facing API functions """
# Test help(), it prints stuff, so we just check whether that goes ok
imageio.help() # should print overview
imageio.help("PNG") # should print about PNG
fname1 = get_remote_file("images/chelsea.png", test_dir)
fname2 = fname1[:-3] + "jpg"
fname3 = fname1[:-3] + "notavalidext"
open(fname3, "wb")
# Test read()
R1 = imageio.read(fname1)
R2 = imageio.read(fname1, "png")
assert R1.format is R2.format
# Fail
raises(ValueError, imageio.read, fname3) # existing but not readable
raises(FileNotFoundError, imageio.read, "notexisting.barf")
raises(IndexError, imageio.read, fname1, "notexistingformat")
# Test save()
W1 = imageio.save(fname2)
W2 = imageio.save(fname2, "JPG")
W1.close()
W2.close()
assert W1.format is W2.format
# Fail
raises(FileNotFoundError, imageio.save, "~/dirdoesnotexist/wtf.notexistingfile")
# Test imread()
im1 = imageio.imread(fname1)
im2 = imageio.imread(fname1, "png")
assert im1.shape[2] == 3
assert np.all(im1 == im2)
# Test imsave()
if os.path.isfile(fname2):
os.remove(fname2)
assert not os.path.isfile(fname2)
imageio.imsave(fname2, im1[:, :, 0])
imageio.imsave(fname2, im1)
assert os.path.isfile(fname2)
# Test mimread()
fname3 = get_remote_file("images/newtonscradle.gif", test_dir)
ims = imageio.mimread(fname3)
assert isinstance(ims, list)
assert len(ims) > 1
assert ims[0].ndim == 3
assert ims[0].shape[2] in (1, 3, 4)
# Test protection
with raises(RuntimeError):
imageio.mimread("imageio:chelsea.png", "dummy", length=np.inf)
if IS_PYPY:
return # no support for npz format :(
# Test mimsave()
fname5 = fname3[:-4] + "2.npz"
if os.path.isfile(fname5):
os.remove(fname5)
assert not os.path.isfile(fname5)
imageio.mimsave(fname5, [im[:, :, 0] for im in ims])
imageio.mimsave(fname5, ims)
assert os.path.isfile(fname5)
# Test volread()
fname4 = get_remote_file("images/stent.npz", test_dir)
vol = imageio.volread(fname4)
assert vol.ndim == 3
assert vol.shape[0] == 256
assert vol.shape[1] == 128
assert vol.shape[2] == 128
# Test volsave()
volc = np.zeros((10, 10, 10, 3), np.uint8) # color volume
fname6 = os.path.join(test_dir, "images", "stent2.npz")
if os.path.isfile(fname6):
os.remove(fname6)
assert not os.path.isfile(fname6)
imageio.volsave(fname6, volc)
imageio.volsave(fname6, vol)
assert os.path.isfile(fname6)
# Test mvolread()
vols = imageio.mvolread(fname4)
assert isinstance(vols, list)
assert len(vols) == 1
assert vols[0].shape == vol.shape
# Test mvolsave()
if os.path.isfile(fname6):
os.remove(fname6)
assert not os.path.isfile(fname6)
imageio.mvolsave(fname6, [volc, volc])
imageio.mvolsave(fname6, vols)
assert os.path.isfile(fname6)
# Fail for save functions
raises(ValueError, imageio.imsave, fname2, np.zeros((100, 100, 5)))
raises(ValueError, imageio.imsave, fname2, 42)
raises(ValueError, imageio.mimsave, fname5, [np.zeros((100, 100, 5))])
raises(ValueError, imageio.mimsave, fname5, [42])
raises(ValueError, imageio.volsave, fname6, np.zeros((100, 100, 100, 40)))
raises(ValueError, imageio.volsave, fname6, 42)
raises(ValueError, imageio.mvolsave, fname6, [np.zeros((90, 90, 90, 40))])
raises(ValueError, imageio.mvolsave, fname6, [42])
def save_normal_map(cls, normal_map, path):
"""
TO BE REMOVED
"""
imageio.save(path, normal_map)
def test_reading_saving():
need_internet()
fname1 = get_remote_file('images/stent.swf', test_dir)
fname2 = fname1[:-4] + '.out.swf'
fname3 = fname1[:-4] + '.compressed.swf'
fname4 = fname1[:-4] + '.out2.swf'
# Read
R = imageio.read(fname1)
assert len(R) == 10
assert R.get_meta_data() == {} # always empty dict
ims1 = []
for im in R:
assert im.shape == (657, 451, 4)
assert mean(im) > 0
ims1.append(im)
# Seek
assert (R.get_data(3) == ims1[3]).all()
# Fails
raises(IndexError, R.get_data, -1) # No negative index
raises(IndexError, R.get_data, 10) # Out of bounds
R.close()
# Test loop
R = imageio.read(fname1, loop=True)
assert (R.get_data(10) == ims1[0]).all()
# setting meta data is ignored
W = imageio.save(fname2)
W.set_meta_data({'foo': 3})
W.close()
# Write and re-read, now without loop, and with html page
imageio.mimsave(fname2, ims1, loop=False, html=True)
ims2 = imageio.mimread(fname2)
# Check images. We can expect exact match, since
# SWF is lossless.
assert len(ims1) == len(ims2)
for im1, im2 in zip(ims1, ims2):
assert (im1 == im2).all()
# Test compressed
imageio.mimsave(fname3, ims2, compress=True)
ims3 = imageio.mimread(fname3)
assert len(ims1) == len(ims3)
for im1, im3 in zip(ims1, ims3):
assert (im1 == im3).all()
# Test conventional, Bonus, we don't officially support this.
_swf = imageio.plugins.swf.load_lib()
_swf.write_swf(fname4, ims1)
ims4 = _swf.read_swf(fname4)
assert len(ims1) == len(ims4)
for im1, im4 in zip(ims1, ims4):
assert (im1 == im4).all()
# We want to manually validate that this file plays in 3d party tools
# So we write a small HTML5 doc that we can load
html = """<!DOCTYPE html>
<html>
<body>
Original:
<embed src="%s">
<br ><br >
Written:
<embed src="%s">
<br ><br >
Compressed:
<embed src="%s">
<br ><br >
Written 2:
<embed src="%s">
</body>
</html>
""" % (fname1, fname2, fname3, fname4)
with open(os.path.join(test_dir, 'test_swf.html'), 'wb') as f:
for line in html.splitlines():
f.write(line.strip().encode('utf-8') + b'\n')
def test_animated_gif():
# Read newton's cradle
ims = imageio.mimread("imageio:newtonscradle.gif")
assert len(ims) == 36
for im in ims:
assert im.shape == (150, 200, 4)
assert im.min() > 0
assert im.max() <= 255
# Get images
im = get_ref_im(4, 0, 0)
ims = []
for i in range(10):
im = im.copy()
im[:, -5:, 0] = i * 20
ims.append(im)
# Store - animated GIF always poops out RGB
for isfloat in (False, True):
for colors in (3, 4):
ims1 = ims[:]
if isfloat:
ims1 = [x.astype(np.float32) / 256 for x in ims1]
ims1 = [x[:, :, :colors] for x in ims1]
fname = fnamebase + ".animated.%i.gif" % colors
imageio.mimsave(fname, ims1, duration=0.2)
# Retrieve
print("fooo", fname, isfloat, colors)
ims2 = imageio.mimread(fname)
ims1 = [x[:, :, :3] for x in ims] # fresh ref
ims2 = [x[:, :, :3] for x in ims2] # discart alpha
for im1, im2 in zip(ims1, ims2):
assert_close(im1, im2, 1.1)
# We can also store grayscale
fname = fnamebase + ".animated.%i.gif" % 1
imageio.mimsave(fname, [x[:, :, 0] for x in ims], duration=0.2)
imageio.mimsave(fname, [x[:, :, :1] for x in ims], duration=0.2)
# Irragular duration. You probably want to check this manually (I did)
duration = [0.1 for i in ims]
for i in [2, 5, 7]:
duration[i] = 0.5
imageio.mimsave(fnamebase + ".animated_irr.gif", ims, duration=duration)
# Other parameters
imageio.mimsave(fnamebase + ".animated.loop2.gif", ims, loop=2, fps=20)
R = imageio.read(fnamebase + ".animated.loop2.gif")
W = imageio.save(fnamebase + ".animated.palettes100.gif", palettesize=100)
assert W._writer.opt_palette_size == 128
# Fail
assert raises(IndexError, R.get_meta_data, -1)
assert raises(ValueError, imageio.mimsave, fname, ims, palettesize=300)
assert raises(ValueError, imageio.mimsave, fname, ims, quantizer="foo")
assert raises(ValueError, imageio.mimsave, fname, ims, duration="foo")
# Add one duplicate image to ims to touch subractangle with not change
ims.append(ims[-1])
# Test subrectangles
imageio.mimsave(fnamebase + ".subno.gif", ims, subrectangles=False)
imageio.mimsave(fnamebase + ".subyes.gif", ims, subrectangles=True)
s1 = os.stat(fnamebase + ".subno.gif").st_size
s2 = os.stat(fnamebase + ".subyes.gif").st_size
assert s2 < s1
# Meta (dummy, because always {})
imageio.mimsave(fname, [x[:, :, 0] for x in ims], duration=0.2)
assert isinstance(imageio.read(fname).get_meta_data(), dict)
def test_functions():
""" Test the user-facing API functions """
# Test help(), it prints stuff, so we just check whether that goes ok
imageio.help() # should print overview
imageio.help('PNG') # should print about PNG
fname1 = get_remote_file('images/chelsea.png', test_dir)
fname2 = fname1[:-3] + 'jpg'
fname3 = fname1[:-3] + 'notavalidext'
open(fname3, 'wb')
# Test read()
R1 = imageio.read(fname1)
R2 = imageio.read(fname1, 'png')
assert R1.format is R2.format
# Fail
raises(ValueError, imageio.read, fname3) # existing but not readable
raises(IOError, imageio.read, 'notexisting.barf')
raises(IndexError, imageio.read, fname1, 'notexistingformat')
# Test save()
W1 = imageio.save(fname2)
W2 = imageio.save(fname2, 'JPG')
assert W1.format is W2.format
# Fail
raises(ValueError, imageio.save, 'wtf.notexistingfile')
# Test imread()
im1 = imageio.imread(fname1)
im2 = imageio.imread(fname1, 'png')
assert im1.shape[2] == 3
assert np.all(im1 == im2)
# Test imsave()
if os.path.isfile(fname2):
os.remove(fname2)
assert not os.path.isfile(fname2)
imageio.imsave(fname2, im1[:, :, 0])
imageio.imsave(fname2, im1)
assert os.path.isfile(fname2)
# Test mimread()
fname3 = get_remote_file('images/newtonscradle.gif', test_dir)
ims = imageio.mimread(fname3)
assert isinstance(ims, list)
assert len(ims) > 1
assert ims[0].ndim == 3
assert ims[0].shape[2] in (1, 3, 4)
if IS_PYPY:
return # no support for npz format :(
# Test mimsave()
fname5 = fname3[:-4] + '2.npz'
if os.path.isfile(fname5):
os.remove(fname5)
assert not os.path.isfile(fname5)
imageio.mimsave(fname5, [im[:, :, 0] for im in ims])
imageio.mimsave(fname5, ims)
assert os.path.isfile(fname5)
# Test volread()
fname4 = get_remote_file('images/stent.npz', test_dir)
vol = imageio.volread(fname4)
assert vol.ndim == 3
assert vol.shape[0] == 256
assert vol.shape[1] == 128
assert vol.shape[2] == 128
# Test volsave()
volc = np.zeros((10, 10, 10, 3), np.uint8) # color volume
fname6 = fname4[:-4] + '2.npz'
if os.path.isfile(fname6):
os.remove(fname6)
assert not os.path.isfile(fname6)
imageio.volsave(fname6, volc)
imageio.volsave(fname6, vol)
assert os.path.isfile(fname6)
# Test mvolread()
vols = imageio.mvolread(fname4)
assert isinstance(vols, list)
assert len(vols) == 1
assert vols[0].shape == vol.shape
# Test mvolsave()
if os.path.isfile(fname6):
os.remove(fname6)
assert not os.path.isfile(fname6)
imageio.mvolsave(fname6, [volc, volc])
imageio.mvolsave(fname6, vols)
assert os.path.isfile(fname6)
# Fail for save functions
raises(ValueError, imageio.imsave, fname2, np.zeros((100, 100, 5)))
raises(ValueError, imageio.imsave, fname2, 42)
raises(ValueError, imageio.mimsave, fname5, [np.zeros((100, 100, 5))])
raises(ValueError, imageio.mimsave, fname5, [42])
raises(ValueError, imageio.volsave, fname4, np.zeros((100, 100, 100, 40)))
raises(ValueError, imageio.volsave, fname4, 42)
raises(ValueError, imageio.mvolsave, fname4, [np.zeros((90, 90, 90, 40))])
raises(ValueError, imageio.mvolsave, fname4, [42])
def test_animated_gif():
if sys.platform.startswith('darwin'):
skip('On OSX quantization of freeimage is unstable')
# Get images
im = get_ref_im(4, 0, 0)
ims = []
for i in range(10):
im = im.copy()
im[:, -5:, 0] = i * 20
ims.append(im)
# Store - animated GIF always poops out RGB
for isfloat in (False, True):
for colors in (3, 4):
ims1 = ims[:]
if isfloat:
ims1 = [x.astype(np.float32) / 256 for x in ims1]
ims1 = [x[:, :, :colors] for x in ims1]
fname = fnamebase + '.animated.%i.gif' % colors
imageio.mimsave(fname, ims1, duration=0.2)
# Retrieve
ims2 = imageio.mimread(fname)
ims1 = [x[:, :, :3] for x in ims] # fresh ref
ims2 = [x[:, :, :3] for x in ims2] # discart alpha
for im1, im2 in zip(ims1, ims2):
assert_close(im1, im2, 1.1)
# We can also store grayscale
fname = fnamebase + '.animated.%i.gif' % 1
imageio.mimsave(fname, [x[:, :, 0] for x in ims], duration=0.2)
imageio.mimsave(fname, [x[:, :, :1] for x in ims], duration=0.2)
# Irragular duration. You probably want to check this manually (I did)
duration = [0.1 for i in ims]
for i in [2, 5, 7]:
duration[i] = 0.5
imageio.mimsave(fnamebase + '.animated_irr.gif', ims, duration=duration)
# Other parameters
imageio.mimsave(fnamebase + '.animated.loop2.gif', ims, loop=2, fps=20)
R = imageio.read(fnamebase + '.animated.loop2.gif')
W = imageio.save(fnamebase + '.animated.palettes100.gif', palettesize=100)
assert W._palettesize == 128
# Fail
raises(IndexError, R.get_meta_data, -1)
raises(ValueError, imageio.mimsave, fname, ims, palettesize=300)
raises(ValueError, imageio.mimsave, fname, ims, quantizer='foo')
raises(ValueError, imageio.mimsave, fname, ims, duration='foo')
# Add one duplicate image to ims to touch subractangle with not change
ims.append(ims[-1])
# Test subrectangles
imageio.mimsave(fnamebase + '.subno.gif', ims, subrectangles=False)
imageio.mimsave(fnamebase + '.subyes.gif', ims, subrectangles=True)
s1 = os.stat(fnamebase + '.subno.gif').st_size
s2 = os.stat(fnamebase + '.subyes.gif').st_size
assert s2 < s1
# Meta (dummy, because always {}
assert isinstance(imageio.read(fname).get_meta_data(), dict)
def test_functions(test_images, tmp_path):
"""Test the user-facing API functions"""
# Test help(), it prints stuff, so we just check whether that goes ok
imageio.help() # should print overview
imageio.help("PNG") # should print about PNG
fname1 = test_images / "chelsea.png"
fname2 = tmp_path / fname1.with_suffix(".jpg").name
fname3 = tmp_path / fname1.with_suffix(".notavalidext").name
open(fname3, "wb")
# Test read()
R1 = imageio.read(fname1)
R2 = imageio.read(fname1, "png")
# this tests if the highest priority png plugin and the highest
# priority fallback plugin match.
# Do we really what to enforce this?
assert type(R1) is type(R2)
raises(ValueError, imageio.read, fname3) # existing but not readable
raises(IndexError, imageio.read, fname1, "notexistingformat")
# Note: This is actually a test of Requests. We should probably
# migrate or remove it.
raises(FileNotFoundError, imageio.read, "notexisting.barf")
# Test save()
W1 = imageio.save(fname2)
W2 = imageio.save(fname2, "JPG")
W1.close()
W2.close()
assert type(W1) is type(W2)
# Fail
raises(FileNotFoundError, imageio.save,
"~/dirdoesnotexist/wtf.notexistingfile")
# Test imread()
im1 = imageio.imread(fname1)
im2 = imageio.imread(fname1, "png")
assert im1.shape[2] == 3
assert np.all(im1 == im2)
# Test imsave()
if os.path.isfile(fname2):
os.remove(fname2)
assert not os.path.isfile(fname2)
imageio.imsave(fname2, im1[:, :, 0])
imageio.imsave(fname2, im1)
assert os.path.isfile(fname2)
# Test mimread()
fname3 = test_images / "newtonscradle.gif"
ims = imageio.mimread(fname3)
assert isinstance(ims, list)
assert len(ims) > 1
assert ims[0].ndim == 3
assert ims[0].shape[2] in (1, 3, 4)
# Test protection
with raises(RuntimeError):
imageio.mimread(test_images / "chelsea.png", "dummy", length=np.inf)
if IS_PYPY:
return # no support for npz format :(
# Test mimsave()
fname5 = str(fname3.with_suffix(""))
fname5 += "2.npz"
if os.path.isfile(fname5):
os.remove(fname5)
assert not os.path.isfile(fname5)
imageio.mimsave(fname5, [im[:, :, 0] for im in ims])
imageio.mimsave(fname5, ims)
assert os.path.isfile(fname5)
# Test volread()
fname4 = test_images / "stent.npz"
vol = imageio.volread(fname4)
assert vol.ndim == 3
assert vol.shape[0] == 256
assert vol.shape[1] == 128
assert vol.shape[2] == 128
# Test volsave()
volc = np.zeros((10, 10, 10, 3), np.uint8) # color volume
fname6 = tmp_path / "stent2.npz"
if os.path.isfile(fname6):
os.remove(fname6)
assert not os.path.isfile(fname6)
imageio.volsave(fname6, volc)
imageio.volsave(fname6, vol)
assert os.path.isfile(fname6)
# Test mvolread()
vols = imageio.mvolread(fname4)
assert isinstance(vols, list)
assert len(vols) == 1
assert vols[0].shape == vol.shape
# Test mvolsave()
if os.path.isfile(fname6):
os.remove(fname6)
assert not os.path.isfile(fname6)
imageio.mvolsave(fname6, [volc, volc])
imageio.mvolsave(fname6, vols)
assert os.path.isfile(fname6)
# Fail for save functions
raises(ValueError, imageio.imsave, fname2, np.zeros((100, 100, 5)))
raises(ValueError, imageio.imsave, fname2, 42)
raises(ValueError, imageio.mimsave, fname5, [np.zeros((100, 100, 5))])
raises(ValueError, imageio.mimsave, fname5, [42])
raises(ValueError, imageio.volsave, fname6, np.zeros((100, 100, 100, 40)))
raises(ValueError, imageio.volsave, fname6, 42)
raises(ValueError, imageio.mvolsave, fname6, [np.zeros((90, 90, 90, 40))])
raises(ValueError, imageio.mvolsave, fname6, [42])
def save_tensor_as_color_img(img_tensor, filename):
np_array = img_tensor.cpu().detach().numpy()
imageio.save(filename, np_array)
def test_tifffile_reading_writing():
""" Test reading and saving tiff """
need_internet() # We keep a test image in the imageio-binary repo
im2 = np.ones((10, 10, 3), np.uint8) * 2
filename1 = os.path.join(test_dir, 'test_tiff.tiff')
# One image
imageio.imsave(filename1, im2)
im = imageio.imread(filename1)
ims = imageio.mimread(filename1)
assert im.shape == im2.shape
assert (im == im2).all()
assert len(ims) == 1
# Multiple images
imageio.mimsave(filename1, [im2, im2, im2])
im = imageio.imread(filename1)
ims = imageio.mimread(filename1)
assert im.shape == im2.shape
assert (im == im2).all() # note: this does not imply that the shape match!
assert len(ims) == 3
for i in range(3):
assert ims[i].shape == im2.shape
assert (ims[i] == im2).all()
# Read all planes as one array - we call it a volume for clarity
vol = imageio.volread(filename1)
vols = imageio.mvolread(filename1)
assert vol.shape == (3, ) + im2.shape
assert len(vols) == 1 and vol.shape == vols[0].shape
for i in range(3):
assert (vol[i] == im2).all()
# remote multipage rgb file
filename2 = get_remote_file('images/multipage_rgb.tif')
img = imageio.mimread(filename2)
assert len(img) == 2
assert img[0].shape == (3, 10, 10)
# Mixed
W = imageio.save(filename1)
W.set_meta_data({'planarconfig': 'SEPARATE'}) # was "planar"
assert W.format.name == 'TIFF'
W.append_data(im2)
W.append_data(im2)
W.close()
#
R = imageio.read(filename1)
assert R.format.name == 'TIFF'
ims = list(R) # == [im for im in R]
assert (ims[0] == im2).all()
# meta = R.get_meta_data()
# assert meta['orientation'] == 'top_left' # not there in later version
# Fail
raises(IndexError, R.get_data, -1)
raises(IndexError, R.get_data, 3)
# Ensure imread + imwrite works round trip
filename3 = os.path.join(test_dir, 'test_tiff2.tiff')
im1 = imageio.imread(filename1)
imageio.imwrite(filename3, im1)
im3 = imageio.imread(filename3)
assert im1.ndim == 3
assert im1.shape == im3.shape
assert (im1 == im3).all()
# Ensure imread + imwrite works round trip - volume like
filename3 = os.path.join(test_dir, 'test_tiff2.tiff')
im1 = imageio.volread(filename1)
imageio.volwrite(filename3, im1)
im3 = imageio.volread(filename3)
assert im1.ndim == 4
assert im1.shape == im3.shape
assert (im1 == im3).all()
# Read metadata
md = imageio.get_reader(filename2).get_meta_data()
assert md['is_imagej'] is None
assert md['description'] == 'shape=(2,3,10,10)'
assert md['description1'] == ''
assert md['datetime'] == datetime.datetime(2015, 5, 9, 9, 8, 29)
assert md['software'] == 'tifffile.py'
# Write metadata
dt = datetime.datetime(2018, 8, 6, 15, 35, 5)
w = imageio.get_writer(filename1, software='testsoftware')
w.append_data(np.zeros((10, 10)), meta={'description': 'test desc',
'datetime': dt})
w.close()
r = imageio.get_reader(filename1)
md = r.get_meta_data()
assert 'datetime' in md
assert md['datetime'] == dt
assert 'software' in md
assert md['software'] == 'testsoftware'
assert 'description' in md
assert md['description'] == 'test desc'
def test_read_and_write():
R = imageio.read(get_remote_file("images/cockatoo.mp4"), "ffmpeg")
assert R.format is imageio.formats["ffmpeg"]
fname1 = get_remote_file("images/cockatoo.mp4", test_dir)
fname2 = fname1[:-4] + ".out.mp4"
frame1, frame2, frame3 = 41, 131, 227
# Read
ims1 = []
with imageio.read(fname1, "ffmpeg") as R:
for i in range(10):
im = R.get_next_data()
ims1.append(im)
assert im.shape == (720, 1280, 3)
assert (im.sum() / im.size) > 0 # pypy mean is broken
assert im.sum() > 0
# Seek to reference frames in steps. OUR code will skip steps
im11 = R.get_data(frame1)
im12 = R.get_data(frame2)
im13 = R.get_data(frame3)
# Now go backwards, seek will kick in
R.get_next_data()
im23 = R.get_data(frame3)
im22 = R.get_data(frame2)
im21 = R.get_data(frame1)
# Also use set_image_index
R.set_image_index(frame2)
im32 = R.get_next_data()
R.set_image_index(frame3)
im33 = R.get_next_data()
R.set_image_index(frame1)
im31 = R.get_next_data()
for im in (im11, im12, im13, im21, im22, im23, im31, im32, im33):
assert im.shape == (720, 1280, 3)
assert (im11 == im21).all() and (im11 == im31).all()
assert (im12 == im22).all() and (im12 == im32).all()
assert (im13 == im23).all() and (im13 == im33).all()
assert not (im11 == im12).all()
assert not (im11 == im13).all()
# Save
with imageio.save(fname2, "ffmpeg") as W:
for im in ims1:
W.append_data(im)
# Read the result
ims2 = imageio.mimread(fname2, "ffmpeg")
assert len(ims1) == len(ims2)
for im in ims2:
assert im.shape == (720, 1280, 3)
# Check
for im1, im2 in zip(ims1, ims2):
diff = np.abs(im1.astype(np.float32) - im2.astype(np.float32))
if IS_PYPY:
assert (diff.sum() / diff.size) < 100
else:
assert diff.mean() < 2.5
def test_read_and_write():
R = imageio.read(get_remote_file("images/cockatoo.mp4"), "ffmpeg")
assert R.format is imageio.formats["ffmpeg"]
fname1 = get_remote_file("images/cockatoo.mp4", test_dir)
fname2 = fname1[:-4] + ".out.mp4"
frame1, frame2, frame3 = 41, 131, 227
# Read
ims1 = []
with imageio.read(fname1, "ffmpeg") as R:
for i in range(10):
im = R.get_next_data()
ims1.append(im)
assert im.shape == (720, 1280, 3)
assert (im.sum() / im.size) > 0 # pypy mean is broken
assert im.sum() > 0
# Seek to reference frames in steps. OUR code will skip steps
im11 = R.get_data(frame1)
im12 = R.get_data(frame2)
im13 = R.get_data(frame3)
# Now go backwards, seek will kick in
R.get_next_data()
im23 = R.get_data(frame3)
im22 = R.get_data(frame2)
im21 = R.get_data(frame1)
# Also use set_image_index
R.set_image_index(frame2)
im32 = R.get_next_data()
R.set_image_index(frame3)
im33 = R.get_next_data()
R.set_image_index(frame1)
im31 = R.get_next_data()
for im in (im11, im12, im13, im21, im22, im23, im31, im32, im33):
assert im.shape == (720, 1280, 3)
assert (im11 == im21).all() and (im11 == im31).all()
assert (im12 == im22).all() and (im12 == im32).all()
assert (im13 == im23).all() and (im13 == im33).all()
assert not (im11 == im12).all()
assert not (im11 == im13).all()
# Save
with imageio.save(fname2, "ffmpeg") as W:
for im in ims1:
W.append_data(im)
# Read the result
ims2 = imageio.mimread(fname2, "ffmpeg")
assert len(ims1) == len(ims2)
for im in ims2:
assert im.shape == (720, 1280, 3)
# Check
for im1, im2 in zip(ims1, ims2):
diff = np.abs(im1.astype(np.float32) - im2.astype(np.float32))
if IS_PYPY:
assert (diff.sum() / diff.size) < 100
else:
assert diff.mean() < 2.5
def test_animated_gif():
# Read newton's cradle
ims = imageio.mimread("imageio:newtonscradle.gif")
assert len(ims) == 36
for im in ims:
assert im.shape == (150, 200, 4)
assert im.min() > 0
assert im.max() <= 255
# Get images
im = get_ref_im(4, 0, 0)
ims = []
for i in range(10):
im = im.copy()
im[:, -5:, 0] = i * 20
ims.append(im)
# Store - animated GIF always poops out RGB
for isfloat in (False, True):
for colors in (3, 4):
ims1 = ims[:]
if isfloat:
ims1 = [x.astype(np.float32) / 256 for x in ims1]
ims1 = [x[:, :, :colors] for x in ims1]
fname = fnamebase + ".animated.%i.gif" % colors
imageio.mimsave(fname, ims1, duration=0.2)
# Retrieve
print("fooo", fname, isfloat, colors)
ims2 = imageio.mimread(fname)
ims1 = [x[:, :, :3] for x in ims] # fresh ref
ims2 = [x[:, :, :3] for x in ims2] # discart alpha
for im1, im2 in zip(ims1, ims2):
assert_close(im1, im2, 1.1)
# We can also store grayscale
fname = fnamebase + ".animated.%i.gif" % 1
imageio.mimsave(fname, [x[:, :, 0] for x in ims], duration=0.2)
imageio.mimsave(fname, [x[:, :, :1] for x in ims], duration=0.2)
# Irragular duration. You probably want to check this manually (I did)
duration = [0.1 for i in ims]
for i in [2, 5, 7]:
duration[i] = 0.5
imageio.mimsave(fnamebase + ".animated_irr.gif", ims, duration=duration)
# Other parameters
imageio.mimsave(fnamebase + ".animated.loop2.gif", ims, loop=2, fps=20)
R = imageio.read(fnamebase + ".animated.loop2.gif")
W = imageio.save(fnamebase + ".animated.palettes100.gif", palettesize=100)
assert W._writer.opt_palette_size == 128
# Fail
assert raises(IndexError, R.get_meta_data, -1)
assert raises(ValueError, imageio.mimsave, fname, ims, palettesize=300)
assert raises(ValueError, imageio.mimsave, fname, ims, quantizer="foo")
assert raises(ValueError, imageio.mimsave, fname, ims, duration="foo")
# Add one duplicate image to ims to touch subractangle with not change
ims.append(ims[-1])
# Test subrectangles
imageio.mimsave(fnamebase + ".subno.gif", ims, subrectangles=False)
imageio.mimsave(fnamebase + ".subyes.gif", ims, subrectangles=True)
s1 = os.stat(fnamebase + ".subno.gif").st_size
s2 = os.stat(fnamebase + ".subyes.gif").st_size
assert s2 < s1
# Meta (dummy, because always {})
imageio.mimsave(fname, [x[:, :, 0] for x in ims], duration=0.2)
assert isinstance(imageio.read(fname).get_meta_data(), dict)
def test_tifffile_reading_writing():
""" Test reading and saving tiff """
need_internet() # We keep a test image in the imageio-binary repo
im2 = np.ones((10, 10, 3), np.uint8) * 2
filename1 = os.path.join(test_dir, 'test_tiff.tiff')
# One image
imageio.imsave(filename1, im2)
im = imageio.imread(filename1)
ims = imageio.mimread(filename1)
assert im.shape == im2.shape
assert (im == im2).all()
assert len(ims) == 1
# Multiple images
imageio.mimsave(filename1, [im2, im2, im2])
im = imageio.imread(filename1)
ims = imageio.mimread(filename1)
assert im.shape == im2.shape
assert (im == im2).all() # note: this does not imply that the shape match!
assert len(ims) == 3
for i in range(3):
assert ims[i].shape == im2.shape
assert (ims[i] == im2).all()
# Read all planes as one array - we call it a volume for clarity
vol = imageio.volread(filename1)
vols = imageio.mvolread(filename1)
assert vol.shape == (3, ) + im2.shape
assert len(vols) == 1 and vol.shape == vols[0].shape
for i in range(3):
assert (vol[i] == im2).all()
# remote multipage rgb file
filename2 = get_remote_file('images/multipage_rgb.tif')
img = imageio.mimread(filename2)
assert len(img) == 2
assert img[0].shape == (3, 10, 10)
# Mixed
W = imageio.save(filename1)
W.set_meta_data({'planarconfig': 'SEPARATE'}) # was "planar"
assert W.format.name == 'TIFF'
W.append_data(im2)
W.append_data(im2)
W.close()
#
R = imageio.read(filename1)
assert R.format.name == 'TIFF'
ims = list(R) # == [im for im in R]
assert (ims[0] == im2).all()
# meta = R.get_meta_data()
# assert meta['orientation'] == 'top_left' # not there in later version
# Fail
raises(IndexError, R.get_data, -1)
raises(IndexError, R.get_data, 3)
# Ensure imread + imwrite works round trip
filename3 = os.path.join(test_dir, 'test_tiff2.tiff')
im1 = imageio.imread(filename1)
imageio.imwrite(filename3, im1)
im3 = imageio.imread(filename3)
assert im1.ndim == 3
assert im1.shape == im3.shape
assert (im1 == im3).all()
# Ensure imread + imwrite works round trip - volume like
filename3 = os.path.join(test_dir, 'test_tiff2.tiff')
im1 = imageio.volread(filename1)
imageio.volwrite(filename3, im1)
im3 = imageio.volread(filename3)
assert im1.ndim == 4
assert im1.shape == im3.shape
assert (im1 == im3).all()
def test_functions():
""" Test the user-facing API functions """
# Test help(), it prints stuff, so we just check whether that goes ok
imageio.help() # should print overview
imageio.help("PNG") # should print about PNG
fname1 = get_remote_file("images/chelsea.png", test_dir)
fname2 = fname1[:-3] + "jpg"
fname3 = fname1[:-3] + "notavalidext"
open(fname3, "wb")
# Test read()
R1 = imageio.read(fname1)
R2 = imageio.read(fname1, "png")
assert R1.format is R2.format
# Fail
raises(ValueError, imageio.read, fname3) # existing but not readable
raises(FileNotFoundError, imageio.read, "notexisting.barf")
raises(IndexError, imageio.read, fname1, "notexistingformat")
# Test save()
W1 = imageio.save(fname2)
W2 = imageio.save(fname2, "JPG")
W1.close()
W2.close()
assert W1.format is W2.format
# Fail
raises(FileNotFoundError, imageio.save,
"~/dirdoesnotexist/wtf.notexistingfile")
# Test imread()
im1 = imageio.imread(fname1)
im2 = imageio.imread(fname1, "png")
assert im1.shape[2] == 3
assert np.all(im1 == im2)
# Test imsave()
if os.path.isfile(fname2):
os.remove(fname2)
assert not os.path.isfile(fname2)
imageio.imsave(fname2, im1[:, :, 0])
imageio.imsave(fname2, im1)
assert os.path.isfile(fname2)
# Test mimread()
fname3 = get_remote_file("images/newtonscradle.gif", test_dir)
ims = imageio.mimread(fname3)
assert isinstance(ims, list)
assert len(ims) > 1
assert ims[0].ndim == 3
assert ims[0].shape[2] in (1, 3, 4)
# Test protection
with raises(RuntimeError):
imageio.mimread("imageio:chelsea.png", "dummy", length=np.inf)
if IS_PYPY:
return # no support for npz format :(
# Test mimsave()
fname5 = fname3[:-4] + "2.npz"
if os.path.isfile(fname5):
os.remove(fname5)
assert not os.path.isfile(fname5)
imageio.mimsave(fname5, [im[:, :, 0] for im in ims])
imageio.mimsave(fname5, ims)
assert os.path.isfile(fname5)
# Test volread()
fname4 = get_remote_file("images/stent.npz", test_dir)
vol = imageio.volread(fname4)
assert vol.ndim == 3
assert vol.shape[0] == 256
assert vol.shape[1] == 128
assert vol.shape[2] == 128
# Test volsave()
volc = np.zeros((10, 10, 10, 3), np.uint8) # color volume
fname6 = os.path.join(test_dir, "images", "stent2.npz")
if os.path.isfile(fname6):
os.remove(fname6)
assert not os.path.isfile(fname6)
imageio.volsave(fname6, volc)
imageio.volsave(fname6, vol)
assert os.path.isfile(fname6)
# Test mvolread()
vols = imageio.mvolread(fname4)
assert isinstance(vols, list)
assert len(vols) == 1
assert vols[0].shape == vol.shape
# Test mvolsave()
if os.path.isfile(fname6):
os.remove(fname6)
assert not os.path.isfile(fname6)
imageio.mvolsave(fname6, [volc, volc])
imageio.mvolsave(fname6, vols)
assert os.path.isfile(fname6)
# Fail for save functions
raises(ValueError, imageio.imsave, fname2, np.zeros((100, 100, 5)))
raises(ValueError, imageio.imsave, fname2, 42)
raises(ValueError, imageio.mimsave, fname5, [np.zeros((100, 100, 5))])
raises(ValueError, imageio.mimsave, fname5, [42])
raises(ValueError, imageio.volsave, fname6, np.zeros((100, 100, 100, 40)))
raises(ValueError, imageio.volsave, fname6, 42)
raises(ValueError, imageio.mvolsave, fname6, [np.zeros((90, 90, 90, 40))])
raises(ValueError, imageio.mvolsave, fname6, [42])
for s in range(SAMPLES):
for imgs, view in [(imgs_birds_eye, 'view0'),
(imgs_kinect, 'view1'),
(imgs_bottom, 'view2')]:
first_fr = [imgs[0]]
last_fr = [imgs[-1]]
samps = sorted(random.sample(range(1, IN_T), k=OUT_T - 2))
img_out = first_fr + [imgs[i] for i in samps] + last_fr
gif_out = gif_out_dir + 'cond' + str(cntr) + '.samp' + str(
s) + '.' + view + '.gif'
print 'Outputing', len(img_out), 'images to', gif_out
writer = imageio.save(gif_out,
duration=(IN_T / 20.) / OUT_T,
quantizer=0,
palettesize=256)
i = 0
for frame in img_out:
writer.append_data(frame)
i += 1
print 'Wrote', i, 'frames for', view
samps = [0] + samps + [IN_T - 1]
# print 'Outputting', len(samps), 'samples'
demoX[s, cntr, :, :7] = traj_angles[samps, :]
demoX[s, cntr, :, 7:] = traj_eep[samps, :]
demoU[s, cntr, :, :7] = traj_vels[samps, :]
demoU[s, cntr, :, 7:] = traj_eep_vel[samps, :]
cntr += 1
def test_tifffile_reading_writing():
""" Test reading and saving tiff """
need_internet() # We keep a test image in the imageio-binary repo
im2 = np.ones((10, 10, 3), np.uint8) * 2
filename1 = os.path.join(test_dir, "test_tiff.tiff")
# One image
imageio.imsave(filename1, im2)
im = imageio.imread(filename1)
ims = imageio.mimread(filename1)
assert im.shape == im2.shape
assert (im == im2).all()
assert len(ims) == 1
# Multiple images
imageio.mimsave(filename1, [im2, im2, im2])
im = imageio.imread(filename1)
ims = imageio.mimread(filename1)
assert im.shape == im2.shape
assert (im == im2).all() # note: this does not imply that the shape match!
assert len(ims) == 3
for i in range(3):
assert ims[i].shape == im2.shape
assert (ims[i] == im2).all()
# Read all planes as one array - we call it a volume for clarity
vol = imageio.volread(filename1)
vols = imageio.mvolread(filename1)
assert vol.shape == (3, ) + im2.shape
assert len(vols) == 1 and vol.shape == vols[0].shape
for i in range(3):
assert (vol[i] == im2).all()
# remote multipage rgb file
filename2 = get_remote_file("images/multipage_rgb.tif")
img = imageio.mimread(filename2)
assert len(img) == 2
assert img[0].shape == (3, 10, 10)
# Mixed
W = imageio.save(filename1)
W.set_meta_data({"planarconfig": "SEPARATE"}) # was "planar"
assert W.format.name == "TIFF"
W.append_data(im2)
W.append_data(im2)
W.close()
#
R = imageio.read(filename1)
assert R.format.name == "TIFF"
ims = list(R) # == [im for im in R]
assert (ims[0] == im2).all()
# meta = R.get_meta_data()
# assert meta['orientation'] == 'top_left' # not there in later version
# Fail
raises(IndexError, R.get_data, -1)
raises(IndexError, R.get_data, 3)
# Ensure imread + imwrite works round trip
filename3 = os.path.join(test_dir, "test_tiff2.tiff")
im1 = imageio.imread(filename1)
imageio.imwrite(filename3, im1)
im3 = imageio.imread(filename3)
assert im1.ndim == 3
assert im1.shape == im3.shape
assert (im1 == im3).all()
# Ensure imread + imwrite works round trip - volume like
filename3 = os.path.join(test_dir, "test_tiff2.tiff")
im1 = imageio.volread(filename1)
imageio.volwrite(filename3, im1)
im3 = imageio.volread(filename3)
assert im1.ndim == 4
assert im1.shape == im3.shape
assert (im1 == im3).all()
# Read metadata
md = imageio.get_reader(filename2).get_meta_data()
assert md["is_imagej"] is None
assert md["description"] == "shape=(2,3,10,10)"
assert md["description1"] == ""
assert md["datetime"] == datetime.datetime(2015, 5, 9, 9, 8, 29)
assert md["software"] == "tifffile.py"
# Write metadata
dt = datetime.datetime(2018, 8, 6, 15, 35, 5)
with imageio.get_writer(filename1, software="testsoftware") as w:
w.append_data(np.zeros((10, 10)),
meta={
"description": "test desc",
"datetime": dt
})
w.append_data(np.zeros((10, 10)), meta={"description": "another desc"})
with imageio.get_reader(filename1) as r:
for md in r.get_meta_data(), r.get_meta_data(0):
assert "datetime" in md
assert md["datetime"] == dt
assert "software" in md
assert md["software"] == "testsoftware"
assert "description" in md
assert md["description"] == "test desc"
md = r.get_meta_data(1)
assert "description" in md
assert md["description"] == "another desc"
def test_functions():
""" Test the user-facing API functions """
# Test help(), it prints stuff, so we just check whether that goes ok
imageio.help() # should print overview
imageio.help('PNG') # should print about PNG
fname1 = get_remote_file('images/chelsea.png', test_dir)
fname2 = fname1[:-3] + 'jpg'
fname3 = fname1[:-3] + 'notavalidext'
open(fname3, 'wb')
# Test read()
R1 = imageio.read(fname1)
R2 = imageio.read(fname1, 'png')
assert R1.format is R2.format
# Fail
raises(ValueError, imageio.read, fname3) # existing but not readable
raises(IOError, imageio.read, 'notexisting.barf')
raises(IndexError, imageio.read, fname1, 'notexistingformat')
# Test save()
W1 = imageio.save(fname2)
W2 = imageio.save(fname2, 'JPG')
assert W1.format is W2.format
# Fail
raises(ValueError, imageio.save, 'wtf.notexistingfile')
# Test imread()
im1 = imageio.imread(fname1)
im2 = imageio.imread(fname1, 'png')
assert im1.shape[2] == 3
assert np.all(im1 == im2)
# Test imsave()
if os.path.isfile(fname2):
os.remove(fname2)
assert not os.path.isfile(fname2)
imageio.imsave(fname2, im1[:, :, 0])
imageio.imsave(fname2, im1)
assert os.path.isfile(fname2)
# Test mimread()
fname3 = get_remote_file('images/newtonscradle.gif', test_dir)
ims = imageio.mimread(fname3)
assert isinstance(ims, list)
assert len(ims) > 1
assert ims[0].ndim == 3
assert ims[0].shape[2] in (1, 3, 4)
if IS_PYPY:
return # no support for npz format :(
# Test mimsave()
fname5 = fname3[:-4] + '2.npz'
if os.path.isfile(fname5):
os.remove(fname5)
assert not os.path.isfile(fname5)
imageio.mimsave(fname5, [im[:, :, 0] for im in ims])
imageio.mimsave(fname5, ims)
assert os.path.isfile(fname5)
# Test volread()
fname4 = get_remote_file('images/stent.npz', test_dir)
vol = imageio.volread(fname4)
assert vol.ndim == 3
assert vol.shape[0] == 256
assert vol.shape[1] == 128
assert vol.shape[2] == 128
# Test volsave()
volc = np.zeros((10, 10, 10, 3), np.uint8) # color volume
fname6 = fname4[:-4] + '2.npz'
if os.path.isfile(fname6):
os.remove(fname6)
assert not os.path.isfile(fname6)
imageio.volsave(fname6, volc)
imageio.volsave(fname6, vol)
assert os.path.isfile(fname6)
# Test mvolread()
vols = imageio.mvolread(fname4)
assert isinstance(vols, list)
assert len(vols) == 1
assert vols[0].shape == vol.shape
# Test mvolsave()
if os.path.isfile(fname6):
os.remove(fname6)
assert not os.path.isfile(fname6)
imageio.mvolsave(fname6, [volc, volc])
imageio.mvolsave(fname6, vols)
assert os.path.isfile(fname6)
# Fail for save functions
raises(ValueError, imageio.imsave, fname2, np.zeros((100, 100, 5)))
raises(ValueError, imageio.imsave, fname2, 42)
raises(ValueError, imageio.mimsave, fname5, [np.zeros((100, 100, 5))])
raises(ValueError, imageio.mimsave, fname5, [42])
raises(ValueError, imageio.volsave, fname4, np.zeros((100, 100, 100, 40)))
raises(ValueError, imageio.volsave, fname4, 42)
raises(ValueError, imageio.mvolsave, fname4, [np.zeros((90, 90, 90, 40))])
raises(ValueError, imageio.mvolsave, fname4, [42])
