def plot_annotaiton_gps(X_Data):
""" Plots gps coordinates on a map projection """
from mpl_toolkits.basemap import Basemap
#lat = X_data[1:5, 1]
#lon = X_data[1:5, 2]
lat = X_data[:, 1]
lon = X_data[:, 2]
fig = df2.figure(fnum=1, doclf=True, docla=True)
df2.close_figure(fig)
fig = df2.figure(fnum=1, doclf=True, docla=True)
# setup Lambert Conformal basemap.
m = Basemap(llcrnrlon=lon.min(),
urcrnrlon=lon.max(),
llcrnrlat=lat.min(),
urcrnrlat=lat.max(),
projection='cea',
resolution='h')
# draw coastlines.
#m.drawcoastlines()
#m.drawstates()
# draw a boundary around the map, fill the background.
# this background will end up being the ocean color, since
# the continents will be drawn on top.
#m.bluemarble()
m.drawmapboundary(fill_color='aqua')
m.fillcontinents(color='coral', lake_color='aqua')
# Convert GPS to projected coordinates
x1, y1 = m(lon, lat) # convert to meters # lon==X, lat==Y
m.plot(x1, y1, 'o')
fig.show()
def el_plot(data, Map=False, show=True):
"""
Plot the elevation for the region from the last time series
:Parameters:
**data** -- the standard python data dictionary
**Map** -- {True, False} (optional): Optional argument. If True,
the elevation will be plotted on a map.
"""
trigrid = data['trigrid']
plt.gca().set_aspect('equal')
plt.tripcolor(trigrid, data['zeta'][-1,:])
plt.colorbar()
plt.title("Elevation")
if Map:
#we set the corners of where the map should show up
llcrnrlon, urcrnrlon = plt.xlim()
llcrnrlat, urcrnrlat = plt.ylim()
#we construct the map. Note that resolution serves to increase
#or decrease the detail in the coastline. Currently set to
#'i' for 'intermediate'
m = Basemap(llcrnrlon, llcrnrlat, urcrnrlon, urcrnrlat, \
resolution='i', suppress_ticks=False)
#set color for continents. Default is grey.
m.fillcontinents(color='ForestGreen')
m.drawmapboundary()
m.drawcoastlines()
if show:
plt.show()
def WorkBook_plotPrisons(self, coords):
lons = coords[0]
lats = coords[1]
print("Graphing image...")
m = Basemap(llcrnrlon=-119, llcrnrlat=22, urcrnrlon=-64,
urcrnrlat=49, projection='lcc', lat_1=33, lat_2=45,
lon_0=-95, resolution='h', area_thresh=10000)
x, y = m(lons, lats)
m.drawmapboundary(fill_color='white')
m.fillcontinents(color='white',lake_color='white')
m.scatter(x,y,10,marker='D',color='m')
plt.figure(frameon=False)
plt.title('US Prison Locations',fontsize=12)
plt.savefig("USPrisons.png")
background = Image.open("SocioEconomicBackground.png")
overlay = Image.open("USPrisons.png")
background = background.convert("RGBA")
overlay = overlay.convert("RGBA")
new_img = Image.blend(background, overlay, 0.5)
new_img.save("SocioEconomic_Prison.png","PNG")
class Map:
def __init__(self, boundary=[[24.527135, -127.792969], [49.61071, -59.765625]], default=True):
from mpl_toolkits.basemap import Basemap
minLat, minLon, maxLat, maxLon = [item for t in boundary for item in t]
self.m = Basemap(
llcrnrlon=minLon,
llcrnrlat=minLat,
urcrnrlon=maxLon,
urcrnrlat=maxLat,
resolution="l",
projection="merc",
area_thresh=1000000,
lon_0=minLon + (maxLon - minLon) / 2,
lat_0=minLat + (maxLat - minLat) / 2,
)
if default:
self.configure()
def configure(self):
self.m.drawcoastlines(linewidth=1.0)
self.m.drawcountries(linewidth=1.0)
self.m.fillcontinents(color="#FFFFFF", lake_color="#FFFFFF")
self.m.drawstates(linewidth=0.5)
self.m.drawmapboundary(fill_color="#FFFFFF")
def plotPoints(self, longitude, latitudes, color, lw=0, marker="o", *args, **kwargs):
mlon, mlat = self.m(longitude, latitudes)
self.m.plot(mlon, mlat, color=color, lw=lw, marker=marker, *args, **kwargs)
def plot_map_twts(twts, title='default title'):
"""
Given an iterable of 'clean' tweets, make a dot map over North America.
"""
fig1 = plt.figure()
ax = fig1.add_subplot(111)
m = Basemap(projection='merc',
resolution = 'l',
llcrnrlon=-136.0, llcrnrlat=24.0,
urcrnrlon=-67.0, urcrnrlat=60.0,
ax=ax)
m.drawcoastlines()
m.drawcountries()
m.drawstates()
m.fillcontinents(color = 'coral', alpha=0.5)
m.drawmapboundary()
lons = [twt['coordinates'][0] for twt in twts]
lats = [twt['coordinates'][1] for twt in twts]
x,y = m(lons, lats)
m.plot(x, y, 'bo', markersize=5)
plt.title(title)
plt.show()
def plot_filtered_diff(self):
"""
function for plotting the difference of filtered vorticity
"""
w_diff, lon, lat, mask = self.vorticity_filter()
south = lat.min(); north =lat.max()
west = lon.min(); east = lon.max()
timeformat = '%Y%m%d-%H%M'
for i in range(len(self.time)):
fig = plt.figure(figsize=(10,8))
basemap = Basemap(projection='merc',llcrnrlat=south,urcrnrlat=north,\
llcrnrlon=west,urcrnrlon=east, resolution='h')
basemap.drawcoastlines()
basemap.fillcontinents(color='coral',lake_color='aqua')
basemap.drawcountries()
basemap.drawstates()
llons, llats=basemap(lon,lat)
con = basemap.pcolormesh(llons,llats,w_diff[i,:,:])
#con.set_clim(vmin=-0.0003, vmax=0.0003)
cbar = plt.colorbar(con, orientation='vertical')
cbar.set_label("vorticity")
#plt.show()
timestr = datetime.strftime(self.time[i], timeformat)
plt.title('vorticity at %s'%timestr)
plt.savefig(self.wdr+'/vorticity_figure/vorticity_diff/'+str(i)+'.png')
print "Saving figure %s to ROMS figure directory"%str(i)
def mapTut():
m = Basemap(projection='mill',llcrnrlat=20,urcrnrlat=50,\
llcrnrlon=-130,urcrnrlon=-60,resolution='c')
m.drawcoastlines()
m.drawcountries()
m.drawstates()
m.fillcontinents(color='#04BAE3',lake_color='#FFFFFF')
m.drawmapboundary(fill_color='#FFFFFF')
# Houston, Texas
lat,lon = 29.7630556,-95.3630556
x,y = m(lon,lat)
m.plot(x,y, 'ro')
lon, lat = -104.237, 40.125 # Location of Boulder
xpt,ypt = m(lon,lat)
m.plot(xpt,ypt, 'go')
plt.title("Geo Plotting")
plt.show()
def contourMap(grdROMS, tlon, tlat, mydata1, mydata2, mydata3, var, mytype, currentdate):
plt.figure(figsize=(10,10), frameon=False)
map = Basemap(lon_0=25,boundinglat=50,
resolution='l',area_thresh=100.,projection='npstere')
x, y = list(map(tlon,tlat))
map.drawcoastlines()
map.fillcontinents(color='grey')
map.drawcountries()
if var=='wind':
levels = np.arange(np.min(mydata3),np.max(mydata3),0.1)
CS1 = map.contourf(x, y, mydata3, levels, cmap=cm.get_cmap('RdYlBu_r',len(levels)-1) )#,alpha=0.5)
plt.colorbar(CS1, orientation='vertical', extend='both', shrink=0.5)
if mytype=="REGSCEN":
step=8
else:
step=1
map.quiver(x[0:-1:step,0:-1:step],y[0:-1:step,0:-1:step],
mydata1[0:-1:step,0:-1:step],mydata2[0:-1:step,0:-1:step],
scale=400)
# plt.title('Var:%s - depth:%s - time:%s'%(var,grdROMS.time))
plotfile='figures/'+str(var)+'_'+str(mytype)+'_time_'+str(currentdate)+'.png'
if not os.path.exists('figures'):
os.makedirs('figure')
plt.savefig(plotfile)
print("Saved figure: %s"%(plotfile))
def individual_ocean_map(eof = '1', phase = 'lanina', showplot = True):
### This function combines several others to make a map
patterns, lats, lons, lams, pcs = combine_regions(phase = phase)
data, lns, lts = create_full_map_individual(patterns, lats, lons, eof = eof)
from numpy import linspace
fig = plt.figure()
ax = fig.add_subplot(111)
m = Basemap(ax = ax, projection = 'robin', lon_0 = 180, resolution = 'i')
m.drawmapboundary(fill_color='aqua')
m.drawcoastlines(linewidth = 0.25)
m.drawcountries()
m.fillcontinents(color='green',lake_color='aqua')
parallels = np.linspace(m.llcrnrlat, m.urcrnrlat, 4)
meridians = np.linspace(m.llcrnrlon, m.urcrnrlon, 4)
m.drawparallels(parallels, linewidth = 1, labels = [0,0,0,0])
m.drawmeridians(meridians, linewidth = 1, labels = [0,0,0,0])
cmap = cm.RdBu_r
im = m.pcolormesh(lns,lts,data, vmin = data[~isnan(data)].min(), \
vmax=data[~isnan(data)].max(), cmap = cmap, latlon=True)
cb = m.colorbar(im,'bottom', size="5%", pad="2%")
if showplot:
plt.show()
return
return fig, ax, m
def plot_world_sst():
# Read some NetCDF data
import netCDF4 as nc
ostia = nc.Dataset('ostia.nc')
tmp = ostia.variables['analysed_sst'][0]
ice = ostia.variables['sea_ice_fraction'][0]
lon = ostia.variables['lon'][:]
lat = ostia.variables['lat'][:]
from mpl_toolkits.basemap import Basemap
# Set up a map
map = Basemap(projection='cyl')
map.drawcoastlines()
map.drawcountries()
map.fillcontinents(color='lightgreen', lake_color='lightblue');
map.drawmapboundary(fill_color='lightblue')
# Re-project the data onto the map
image = map.transform_scalar(tmp,lon,lat,200,200)
# Plot the data
map.imshow(image);
plt.show()
def bb_map(lons, lats, projection='merc', resolution='i', drawparallels=True, drawmeridians=True, ax=plt.gca()): """ USAGE ----- m = bb_map(lons, lats, **kwargs) Returns a Basemap instance with lon,lat bounding limits inferred from the input arrays `lons`,`lats`. Coastlines, countries, states, parallels and meridians are drawn, and continents are filled. """ lons,lats = map(np.asanyarray, (lons,lats)) lonmin,lonmax = lons.min(),lons.max() latmin,latmax = lats.min(),lats.max() m = Basemap(llcrnrlon=lonmin, urcrnrlon=lonmax, llcrnrlat=latmin, urcrnrlat=latmax, projection=projection, resolution=resolution, ax=ax) plt.ioff() # Avoid showing the figure. m.fillcontinents(color='0.9', zorder=9) m.drawcoastlines(zorder=10) m.drawstates(zorder=10) m.drawcountries(linewidth=2.0, zorder=10) m.drawmapboundary(zorder=9999) if drawmeridians: m.drawmeridians(np.arange(np.floor(lonmin), np.ceil(lonmax), 1), linewidth=0.15, labels=[1, 0, 1, 0], zorder=12) if drawparallels: m.drawparallels(np.arange(np.floor(latmin), np.ceil(latmax), 1), linewidth=0.15, labels=[1, 0, 0, 0], zorder=12) plt.ion() return m
def sstMap(nipaPhase, phase = 'allyears', field = 'sst', fig = None, ax = None, monte = False):
from numpy import linspace
if fig == None:
fig = plt.figure()
ax = fig.add_subplot(111)
m = Basemap(ax = ax, projection = 'robin', lon_0 = 270, resolution = 'i')
m.drawmapboundary(fill_color='aqua')
m.drawcoastlines(linewidth = 0.25)
m.drawcountries()
m.fillcontinents(color='green',lake_color='aqua')
parallels = np.linspace(m.llcrnrlat, m.urcrnrlat, 4)
meridians = np.linspace(m.llcrnrlon, m.urcrnrlon, 4)
m.drawparallels(parallels, linewidth = 1, labels = [0,0,0,0])
m.drawmeridians(meridians, linewidth = 1, labels = [0,0,0,0])
lons = nipaPhase.lon[field]
lats = nipaPhase.lat[field]
if monte:
data = nipaPhase.monte_grid[phase]
levels = linspace(0, data.max(), data.max())
cmap = cm.Reds
else:
data = nipaPhase.corr_grid[field][phase]
levels = linspace(-0.8,0.8,9)
cmap = cm.RdBu
lons, lats = np.meshgrid(lons,lats)
im1 = m.pcolormesh(lons,lats,data, vmin = np.min(levels), \
vmax=np.max(levels), cmap = cmap, latlon=True)
cb = m.colorbar(im1,'bottom', size="5%", pad="2%")
ax.set_title('%s, %s' % (phase, field))
return fig, ax, m
def map_interiorAK(
width=1800000,
height=1200000,
water='lightskyblue',
earth='snow',
resolution='i'):
"""
Albers Equal Area map of interior Alaska, with some overridable presets.
"""
bmap = Basemap(
width=width,
height=height,
resolution=resolution,
projection='aea',
lat_1=55., lat_2=75., lat_0=65., lon_0=-150.)
bmap.drawcoastlines()
bmap.drawrivers(color=water)
bmap.drawcountries()
bmap.fillcontinents(lake_color=water, color=earth)
# labels = [left,right,top,bottom]
bmap.drawmeridians(
np.arange(-180, 180, 10), labels=[False, False, False, 1])
bmap.drawparallels(
np.arange(0, 80, 5), labels=[1, 1, False, False])
bmap.drawmapboundary(fill_color=water)
return bmap
def map_trace(tr,ax='None',showpath=True,showplot=True,Lat_0=0.0,Lon_0=60.0):
from mpl_toolkits.basemap import Basemap
if ax == 'None':
m = Basemap(projection='ortho',lat_0=Lat_0,lon_0=Lon_0,resolution='l')
m.drawmapboundary()
m.drawcoastlines()
m.fillcontinents(color='gray',lake_color='white')
else:
m = ax
x1,y1 = m(tr.stats.sac['evlo'],tr.stats.sac['evla'])
x2,y2 = m(tr.stats.sac['stlo'],tr.stats.sac['stla'])
m.scatter(x1,y1,s=200.0,marker='*',facecolors='y',edgecolors='k',zorder=99)
m.scatter(x2,y2,s=20.0,marker='^',color='b',zorder=99)
if showpath == True:
m.drawgreatcircle(tr.stats.sac['evlo'],tr.stats.sac['evla'],
tr.stats.sac['stlo'],tr.stats.sac['stla'],
linewidth=1,color='k',alpha=0.5)
if showplot == True:
plt.show()
else:
return m
def nepal_basemap(prams = nepal_ETAS_prams, fnum=0, map_res='i', **kwargs):
# hours_after: upper time limit for aftershocks to plot.
prams.update(kwargs)
#
lons_nepal = [83., 87.]
lats_nepal = [26., 30.]
todt=prams.get('todt', None)
catlen=prams.get('catlen', 5.*365.)
lons=prams['lons']
lats=prams['lats']
mc = prams['mc']
#
if todt==None: todt = dtm.datetime.now(pytz.timezone('UTC'))
dt0 = todt - dtm.timedelta(days=catlen)
#
plt.figure(fnum)
plt.clf()
ax1=plt.gca()
cntr = [.5*(lons[0]+lons[1]), .5*(lats[0]+lats[1])]
#
cm=Basemap(llcrnrlon=lons_nepal[0], llcrnrlat=lats_nepal[0], urcrnrlon=lons_nepal[1], urcrnrlat=lats_nepal[1], resolution=map_res, projection='cyl', lon_0=cntr[0], lat_0=cntr[1])
cm.drawcoastlines(color='gray', zorder=1)
cm.drawcountries(color='gray', zorder=1)
cm.drawstates(color='gray', zorder=1)
cm.drawrivers(color='gray', zorder=1)
cm.fillcontinents(color='beige', zorder=0)
#
cm.drawmeridians(list(range(int(lons[0]), int(lons[1]))), color='k', labels=[0,0,1,1])
cm.drawparallels(list(range(int(lats[0]), int(lats[1]))), color='k', labels=[1, 1, 0, 0])
#
return cm
def mapper(image):
fig = plt.figure()
cmap = mpc.ListedColormap(palettable.colorbrewer.diverging.PiYG_5.mpl_colors)
# cmap.set_bad('grey',1.)
# ax = fig.add_subplot(1)
plt.plot()
plt.title("a. ((maxNDVI/mm AcuPrecip)/year)", loc= 'left')
#set the spatial cordinates of the grid, mask the ocean and draw coastlines
map = Basemap(llcrnrlon=112.0,llcrnrlat=-44.5,urcrnrlon=156.25,urcrnrlat=-10, resolution = 'h', epsg=4326)
map.drawmapboundary(fill_color='grey')
map.fillcontinents(color= 'none', lake_color='white')
map.drawlsmask(land_color='none', )
map.drawcoastlines()
map.imshow(np.flipud(image), cmap=cmap, vmin=-0.006, vmax=0.009,)
# cb = plt.colorbar()
#Tweaking the colorbar so the the ticks allign with the grid.
cb = map.colorbar()#ticks= [-0.01, -0.0075, -0.0050, -0.00250, 0.0000, 0.0025, 0.0050, 0.0075, 0.010, 0.0125])
tick_locator = ticker.MaxNLocator(nbins=5)
cb.locator = tick_locator
cb.update_ticks()
#add in the grid
map.drawparallels(np.arange(-50, -10, 10),labels=[1,0,0,0], dashes=[1,2])#color= 'none')
map.drawmeridians(np.arange(110, 156.25, 10),labels=[0,0,0,1], dashes=[1,2])
plt.show()
def plot_us(lats, lons, save_name=None):
fig = plt.figure(figsize=(10, 10))
ax = fig.add_subplot(111)
big_map = Basemap(resolution='h',
lat_0=36, lon_0=-107.5,
llcrnrlat=32, llcrnrlon=-125,
urcrnrlat=43, urcrnrlon=-110)
big_map.drawcoastlines()
big_map.drawstates()
big_map.drawcountries()
big_map.drawmapboundary(fill_color='#7777ff')
big_map.fillcontinents(color='#ddaa66', lake_color='#7777ff', zorder=0)
x, y = big_map(lons, lats)
big_map.plot(x[0], y[0], 'ro', markersize=2)
axins = zoomed_inset_axes(ax, 20, loc=1)
ll_lat, ll_lon = 37.8, -122.78
ur_lat, ur_lon = 38.08, -122.43
axins.set_xlim(ll_lon, ur_lon)
axins.set_ylim(ur_lon, ur_lat)
small_map = Basemap(resolution='h',
llcrnrlat=ll_lat, llcrnrlon=ll_lon,
urcrnrlat=ur_lat, urcrnrlon=ur_lon,
ax=axins)
small_map.drawcoastlines()
small_map.drawmapboundary(fill_color='#7777ff')
small_map.fillcontinents(color='#ddaa66', lake_color='#7777ff', zorder=0)
x, y = small_map(lons, lats)
small_map.plot(x, y, 'ro', markersize=3)
mark_inset(ax, axins, loc1=2, loc2=4, fc="none", ec="0.5")
if save_name:
fig.savefig(save_name)
def drawNPole(self):
#No es muy ortodoxo dibujar dentro de la clase
my_map = Basemap(projection='npstere',boundinglat=50,lon_0=270,resolution='h', round=True)
my_map.drawcoastlines()
my_map.drawcountries()
my_map.fillcontinents(color='coral')
my_map.drawmapboundary()
#print "tamano:", len(self)
for measure in self:
x,y = my_map(measure.getLon(), measure.getLat())
print measure.getLat(), measure.getLon(), measure.getSic()
color = 'go'
#print "color->", measure.getSic()
if measure.getSic()>0 and measure.getSic()<=0.2:
color = 'go'
elif measure.getSic()>0.2 and measure.getSic()<=0.5:
color = 'yo'
else:
color = 'ro'
my_map.plot(y, x, color, markersize=12)
my_map.drawmeridians(np.arange(0, 360, 30))
my_map.drawparallels(np.arange(-90, 90, 30))
#m.hexbin(x1,y1, C=sic[beam],gridsize=len(sic[beam]),cmap=plt.cm.jet)
plt.gcf().set_size_inches(18,10)
plt.show()
def GDELT_maplot(self, point_counts, centro_lat, centro_lon, llat, llon, ulat, ulon): #,centro_lat,centro_lon,llat,llon,ulat,ulon):
# print point_counts
# print centro_lat, centro_lon, llat, llon, ulat, ulon
def get_size(count):
''' Convert a count to a point size. Log-scaled.'''
scale_factor = 2
return np.log10(count + 1) * scale_factor
# Note that we're drawing on a regular matplotlib figure, so we set the
# figure size just like we would any other.
plt.figure(figsize=(10, 10))
# Create the Basemap
event_map = Basemap(projection='merc',
resolution='l', area_thresh=1000.0, # Low resolution
lat_0= centro_lat, lon_0=centro_lon, # Map center
llcrnrlon=llon, llcrnrlat=llat, # Lower left corner
urcrnrlon=ulon, urcrnrlat=ulat) # Upper right corner
# Draw important features
event_map.drawcoastlines()
event_map.drawcountries()
event_map.fillcontinents(color='0.8') # Light gray
event_map.drawmapboundary()
# Draw the points on the map:
for point, count in point_counts.iteritems():
x, y = event_map(point[1], point[0]) # Convert lat, long to y,x
# print x , y
marker_size = get_size(count)
event_map.plot(x, y, 'ro', markersize=marker_size, alpha=0.3)
plt.show()
def draw_map_with_labels(labels, map_number):
"""
Draws a map once the labels substituting country names are given
"""
min_lon = -20.
max_lon = 49.
min_lat = 32.
max_lat = 60.
europe = Basemap(
resolution='l',
projection='aea',
lon_0=0,
lat_0=40,
llcrnrlat=min_lat,
urcrnrlat=max_lat,
llcrnrlon=min_lon,
urcrnrlon=max_lon,
lat_ts=(min_lon+max_lon)/2)
europe.drawcountries(linewidth=0.2, color=COUNTRY_COLOR)
europe.drawmapboundary(linewidth=0.5, fill_color=SEA_COLOR)
europe.fillcontinents(color=LAND_COLOR, lake_color=SEA_COLOR)
europe.drawcoastlines(linewidth=0.2)
for label in labels:
lon, lat = europe(label[1], label[2])
plt.text(lon, lat, label[0],
color=TEXT_COLOR, fontweight='heavy', fontstyle='oblique',
ha='center', clip_on=True)
plt.tight_layout()
logging.info('Saving into file: languages_{}.png'.format(map_number + 1))
plt.savefig('languages_{}.png'.format(map_number + 1))
def test_geographic_histogram():
tropics = UniformRandomPointSource()
tropics.num_points = 100000
tropics.bbox_min = ( -180, -23.4378 )
tropics.bbox_max = ( 180, 23.4378 )
try:
pyplot.figure()
pyplot.subplot(111, aspect='equal')
mymap = Basemap(projection='moll',
lon_0=0,
resolution='l')
mymap.drawcoastlines(color='white', zorder=5)
mymap.fillcontinents(color='black', lake_color='white')
artists = geographic_histogram( mymap,
tropics.points(),
bbox_lowerleft=(-180, -90),
bbox_upperright=(180, 90)
)
pyplot.savefig('tracktable_geographic_histogram_test.png', figsize=(4, 4), dpi=150)
return True
except Exception, e:
traceback.print_exc()
return False
def basemap():
#basemap
try:
from mpl_toolkits.basemap import Basemap
import matplotlib.pyplot as plt
#import numpy as np
# use low resolution coastlines.
map = Basemap(boundinglat=22,lon_0=0,projection='npaeqd',resolution='l')
# draw coastlines, country boundaries, fill continents.
map.drawcoastlines(linewidth=0.25)
map.drawcountries(linewidth=0.25)
map.fillcontinents(color='white')
# draw the edge of the map projection region (the projection limb)
map.drawmapboundary()
plt.title('Contours of countries for orthographic basemap')
plt.show()
return 0
except IOError as err:
print "File error: " + str(err)
except ValueError as err:
print "Value Error: " + str(err)
def get_catalog_map(lats=None, lons=None, eq_cat=[], map_res='i', map_projection='cyl', fignum=0, ax=None, do_clf=True):
#
if lats==None: lats = [31., 42.]
if lons==None: lons = [-125., -114.]
#
if fignum!=None: plt.figure(fignum)
if do_clf: plt.clf()
if ax==None: ax=plt.gca()
#
cm = Basemap(llcrnrlon=lons[0], llcrnrlat=lats[0], urcrnrlon=lons[1], urcrnrlat=lats[1], resolution=map_res, projection=map_projection, lon_0=numpy.mean(lons), lat_0=numpy.mean(lats), ax=ax)
cm.drawcoastlines(color='gray', zorder=1)
cm.drawcountries(color='gray', zorder=1)
cm.drawstates(color='gray', zorder=1)
cm.drawrivers(color='gray', zorder=1)
cm.fillcontinents(color='beige', zorder=0)
# drawlsmask(land_color='0.8', ocean_color='w', lsmask=None, lsmask_lons=None, lsmask_lats=None, lakes=True, resolution='l', grid=5, **kwargs)
#cm.drawlsmask(land_color='0.8', ocean_color='c', lsmask=None, lsmask_lons=None, lsmask_lats=None, lakes=True, resolution=mapres, grid=5)
print("lat, lon ranges: ", lats, lons)
cm.drawmeridians(list(range(int(lons[0]), int(lons[1]))), color='k', labels=[0,0,1,1])
cm.drawparallels(list(range(int(lats[0]), int(lats[1]))), color='k', labels=[1, 1, 0, 0])
#
if eq_cat!=None:
# can we also assign sizes dynamically, like colors?
if hasattr(eq_cat, 'dtype'):
# it's a recrray:
X,Y = cm(eq_cat['lon'], eq_cat['lat'])
else:
# it's probably a list... though we should check for dicts, etc.
X,Y = cm([rw[2] for rw in eq_cat], [rw[1] for rw in eq_cat])
#
cm.plot(X,Y, '.')
#
return cm
def example_2():
# retrieve data
dir = "/homespace/gaubert/viirs/Mband-SDR"
geo_file = h5py.File("%s/%s" %(dir,"GMODO_npp_d20030125_t0847056_e0848301_b00015_c20090513182937526121_gisf_pop.h5"))
lats = geo_file['All_Data']['VIIRS-MOD-GEO_All']['Latitude'][:]
lons = geo_file['All_Data']['VIIRS-MOD-GEO_All']['Longitude'][:]
# draw map with markers for float locations
#m = Basemap(projection='hammer',lon_0=180)
lon_ref = lons[0][0]-lons[-1][-1]/2
lat_ref = 10
#m = Basemap(projection='ortho',lat_0=lat_ref,lon_0=lon_ref,resolution='l')
m = Basemap(projection='nsper',lat_0=lat_ref,lon_0=lon_ref,satellite_height=2000*1000,resolution='l')
#x, y = m(lons[0:10],lats[0:10])
x,y = m(lons,lats)
#m.drawcoastlines()
m.drawmapboundary(fill_color='#99ffff')
m.fillcontinents(color='#cc9966',lake_color='#99ffff')
m.scatter(x,y,s = 1 ,color='k')
#m.drawgreatcircle(lons[0][0],lats[0][0],lons[0][-1],lats[0][-1],linewidth=2,color='b')
#m.drawgreatcircle(lons[-1][0],lats[0][0],lons[-1][-1],lats[0][-1],linewidth=2,color='b')
plt.title('Locations of %s ARGO floats active between %s and %s' %\
(len(lats),'2002', '2003'))
plt.savefig('/tmp/plotargo.png')
def ww3_plot(fname,xlim=False,ylim=False,res='c'):
'''
ex.:
f='WW3_data/2012/multi_1.glo_30m.dp.201201.grb2'
swanu.ww3_plot(f,xlim=[-100,-80],ylim=[20,32],res='i')
'''
from mpl_toolkits.basemap import Basemap
import pylab as pl
f=pygrib.open(fname)
lat,lon=f.message(1).latlons()
lon[lon>180]=lon[lon>180]-360.
if not xlim: xlim=-180,180
if not ylim: ylim=-90,90
m = Basemap(projection='cyl',llcrnrlat=ylim[0],urcrnrlat=ylim[1],
llcrnrlon=xlim[0],urcrnrlon=xlim[1],resolution=res)
m.drawcoastlines()
m.fillcontinents(color='#cccccc',lake_color='w')
# draw parallels and meridians.
m.drawparallels(np.arange(-90.,91.,30.))
m.drawmeridians(np.arange(-180.,181.,60.))
x,y=m(lon,lat)
pl.plot(x,y,'b.',ms=.5)
pl.show()
def main():
data = numpy.genfromtxt("data.csv", dtype=None, delimiter=',', names=True)
#lat - data[x][1]
#lon - data[x][2]
print(data)
# Note that we're drawing on a regular matplotlib figure, so we set the
# figure size just like we would any other.
plt.figure(figsize=(28,18))
# Create the Basemap
event_map = Basemap(projection='merc',
resolution='l', area_thresh=1000.0, # Low resolution
lat_0 = 55.0, lon_0=60.0, # Map center
llcrnrlon=-179, llcrnrlat=-72, # Lower left corner
urcrnrlon=179, urcrnrlat=78) # Upper right corner
# Draw important features
event_map.drawcoastlines()
event_map.drawcountries()
event_map.fillcontinents(color='0.8') # Light gray
event_map.drawmapboundary()
a = [f for f in data if int(f[2])<500]
b = [f for f in data if int(f[2])<500]
# Draw the points on the map:
for i in range(len(data)-8000):
x, y = event_map(data[i][2], data[i][1]) # Convert lat, long to y,x
marker_size = data[i][3]/4
event_map.plot(x,y, 'ro', markersize=marker_size, alpha=0.3)
plt.savefig('map.png', bbox_inches='tight')
def example_1():
orig_file = '/tmp/comp-tempo/20101206-EUR-L2P_GHRSST-SSTsubskin-AVHRR_METOP_A-eumetsat_sstmgr_metop02_20101206_000403-v01.7-fv01.0.nc'
orig_dset = Dataset(orig_file, 'a')
o_lat = orig_dset.variables['lat'][:].ravel()
o_lon = orig_dset.variables['lon'][:].ravel()
print(np.mean(o_lon))
# lon_0 is the central longitude of the projection.
# resolution = 'l' means use low resolution coastlines.
# optional parameter 'satellite_height' may be used to
# specify height of orbit above earth (default 35,786 km).
m = Basemap(projection='geos',lon_0=133,resolution='l')
m.drawcoastlines()
m.fillcontinents(color='coral',lake_color='aqua')
# draw parallels and meridians.
m.drawparallels(np.arange(-90.,120.,30.))
m.drawmeridians(np.arange(0.,420.,60.))
m.drawmapboundary(fill_color='aqua')
x, y = m(o_lat[0:100] , o_lon[0:100])
#m.plot(x, y)
plt.title("Full Disk Geostationary Projection")
#plt.savefig('geos_full.png')
plt.show()
def background_map(self, ax):
llcrnrlat, urcrnrlat, llcrnrlon, urcrnrlon, lat_ts = (31, 44, -126, -113, 37.5)
m = Basemap(projection='merc', llcrnrlat=llcrnrlat,
urcrnrlat=urcrnrlat, llcrnrlon=llcrnrlon, urcrnrlon=urcrnrlon,
lat_ts=lat_ts, resolution='i', ax=ax)
m.drawmapboundary(fill_color='lightblue', zorder=0)
m.fillcontinents(zorder=0)
etopofn = '/home/behry/uni/data/etopo1_central_europe_gmt.grd'
etopodata = Dataset(etopofn, 'r')
z = etopodata.variables['z'][:]
x_range = etopodata.variables['x_range'][:]
y_range = etopodata.variables['y_range'][:]
spc = etopodata.variables['spacing'][:]
lats = np.arange(y_range[0], y_range[1], spc[1])
lons = np.arange(x_range[0], x_range[1], spc[0])
topoin = z.reshape(lats.size, lons.size, order='C')
# transform to nx x ny regularly spaced 5km native projection grid
nx = int((m.xmax - m.xmin) / 5000.) + 1; ny = int((m.ymax - m.ymin) / 5000.) + 1
topodat, x, y = m.transform_scalar(np.flipud(topoin), lons, lats, nx, ny, returnxy=True)
ls = LightSource(azdeg=300, altdeg=15, hsv_min_sat=0.2, hsv_max_sat=0.3,
hsv_min_val=0.2, hsv_max_val=0.3)
# shade data, creating an rgb array.
rgb = ls.shade(np.ma.masked_less(topodat / 1000.0, 0.0), cm.gist_gray_r)
m.imshow(rgb)
m.drawmeridians(np.arange(6, 12, 2), labels=[0, 0, 0, 1], color='white',
linewidth=0.5, zorder=0)
m.drawparallels(np.arange(44, 50, 2), labels=[1, 0, 0, 0], color='white',
linewidth=0.5, zorder=0)
m.drawcoastlines(zorder=1)
m.drawcountries(linewidth=1.5, zorder=1)
m.drawstates()
m.drawrivers(color='lightblue', zorder=1)
return m
def plotPointsOnUSMap(points, blueMarble=False, bkcolor='#85A6D9', returnBaseMapObject = False, pointLabels=[], *args, **kwargs):
from mpl_toolkits.basemap import Basemap
m = Basemap(llcrnrlon=-125.15625, llcrnrlat=20, urcrnrlon=-59.765625, urcrnrlat=49.61071, projection='mill', lat_1=24, lat_2=50, lon_0=-98, resolution='l', area_thresh=10000)
m.drawmapboundary(fill_color='#85A6D9')
if blueMarble: m.bluemarble()
else:
m.drawmapboundary(fill_color=bkcolor)
m.fillcontinents(color='white',lake_color=bkcolor)
m.drawcoastlines(color='#6D5F47', linewidth=.4)
m.drawcountries(color='#6D5F47', linewidth=.4)
m.drawstates(color='#6D5F47', linewidth=.4)
# m.fillcontinents(color='white',lake_color='#85A6D9')
# m.drawstates(color='#6D5F47', linewidth=.4)
# m.drawcoastlines(color='#6D5F47', linewidth=.4)
# m.drawcountries(color='#6D5F47', linewidth=.4)
# m.drawmeridians(n.arange(-180, 180, 30), color='#bbbbbb')
# m.drawparallels(n.arange(-90, 90, 30), color='#bbbbbb')
lats, lngs = zip(*points)
x,y = m(lngs,lats)
scatterPlot = m.scatter(x, y, zorder = 2, *args, **kwargs)
for population, xpt, ypt in zip(pointLabels, x, y):
label_txt = str(population)
plt.text( xpt, ypt, label_txt, color = 'black', size='small', horizontalalignment='center', verticalalignment='center', zorder = 3)
if not returnBaseMapObject: return scatterPlot
else: return (scatterPlot, m)
def plot(self,key='Re'):
"""
Create a plot of a variable over the ORACLES study area.
Parameters
----------
key : string
See names for available datasets to plot.
clf : boolean
If True, clear off pre-existing figure. If False, plot over pre-existing figure.
Modification history
--------------------
Written: Michael Diamond, 08/16/2016, Seattle, WA
Modified: Michael Diamond, 08/21/2016, Seattle, WA
-Added ORACLES routine flight plan, Walvis Bay (orange), and Ascension Island
Modified: Michael Diamond, 09/02/2016, Swakopmund, Namibia
-Updated flihgt track
"""
plt.clf()
size = 16
font = 'Arial'
m = Basemap(llcrnrlon=self.lon.min(),llcrnrlat=self.lat.min(),urcrnrlon=self.lon.max(),\
urcrnrlat=self.lat.max(),projection='merc',resolution='i')
m.drawparallels(np.arange(-180,180,5),labels=[1,0,0,0],fontsize=size,fontname=font)
m.drawmeridians(np.arange(0,360,5),labels=[1,1,0,1],fontsize=size,fontname=font)
m.drawmapboundary(linewidth=1.5)
m.drawcoastlines()
m.drawcountries()
if key == 'Pbot' or key == 'Ptop' or key == 'Nd' or key == 'DZ':
m.drawmapboundary(fill_color='steelblue')
m.fillcontinents(color='floralwhite',lake_color='steelblue',zorder=0)
else: m.fillcontinents('k',zorder=0)
if key == 'Nd':
m.pcolormesh(self.lon,self.lat,self.ds['%s' % key],cmap=self.colors['%s' % key],\
latlon=True,norm = LogNorm(vmin=self.v['%s' % key][0],vmax=self.v['%s' % key][1]))
elif key == 'Zbf' or key == 'Ztf':
levels = [0,250,500,750,1000,1250,1500,1750,2000,2500,3000,3500,4000,5000,6000,7000,8000,9000,10000]
m.contourf(self.lon,self.lat,self.ds['%s' % key],levels=levels,\
cmap=self.colors['%s' % key],latlon=True,extend='max')
elif key == 'DZ':
levels = [0,500,1000,1500,2000,2500,3000,3500,4000,4500,5000,5500,6000,6500,7000]
m.contourf(self.lon,self.lat,self.ds['%s' % key],levels=levels,\
cmap=self.colors['%s' % key],latlon=True,extend='max')
else:
m.pcolormesh(self.lon,self.lat,self.ds['%s' % key],cmap=self.colors['%s' % key],\
latlon=True,vmin=self.v['%s' % key][0],vmax=self.v['%s' % key][1])
cbar = m.colorbar()
cbar.ax.tick_params(labelsize=size-2)
cbar.set_label('[%s]' % self.units['%s' % key],fontsize=size,fontname=font)
if key == 'Pbot' or key == 'Ptop': cbar.ax.invert_yaxis()
m.scatter(14.5247,-22.9390,s=250,c='orange',marker='D',latlon=True)
m.scatter(-14.3559,-7.9467,s=375,c='c',marker='*',latlon=True)
m.scatter(-5.7089,-15.9650,s=375,c='chartreuse',marker='*',latlon=True)
m.plot([14.5247,13,0],[-22.9390,-23,-10],c='w',linewidth=5,linestyle='dashed',latlon=True)
m.plot([14.5247,13,0],[-22.9390,-23,-10],c='k',linewidth=3,linestyle='dashed',latlon=True)
plt.title('%s from MSG SEVIRI on %s/%s/%s at %s UTC' % \
(self.names['%s' % key],self.month,self.day,self.year,self.time),fontsize=size+4,fontname=font)
plt.show()
#!/usr/bin/env python
from mpl_toolkits.basemap import Basemap
import numpy as np
import matplotlib.pyplot as plt
#m = Basemap(width=15.e6,height=15.e6,\
# projection='gnom',lat_0=60.,lon_0=-30.)
m = Basemap(projection='merc',llcrnrlat=41,urcrnrlat=52,\
llcrnrlon=-6,urcrnrlon=10,lat_ts=15,resolution='c')
m.drawmapboundary(fill_color='aqua')
m.drawcoastlines()
m.fillcontinents(color='green', lake_color='aqua')
m.drawparallels(np.arange(10, 90, 20))
m.drawmeridians(np.arange(-180, 180, 30))
m.drawcountries()
m.plot(2.85, 45.9667, 'ro', latlon=True)
m.plot(2.89667, 45.7659, 'ro', latlon=True)
m.plot(3.23333, 45.7667, 'ro', latlon=True)
m.plot(3.43333, 45.7333, 'ro', latlon=True)
m.plot(3.4, 45.75, 'ro', latlon=True)
m.plot(2.58333, 45.9333, 'ro', latlon=True)
m.plot(3.16667, 45.4667, 'ro', latlon=True)
m.plot(3.58333, 45.6667, 'ro', latlon=True)
m.plot(3.3, 45.75, 'ro', latlon=True)
m.plot(3.25, 45.8, 'ro', latlon=True)
m.plot(2.9, 46.0333, 'ro', latlon=True)
m.plot(3.26667, 45.9667, 'ro', latlon=True)
m.plot(3.49973, 45.5506, 'ro', latlon=True)
m.plot(3.21667, 45.75, 'ro', latlon=True)
m.plot(3.58333, 45.6333, 'ro', latlon=True)
def map_all_obs_tracks_SIO(ib_track_file_list, an_track_file_list, outfile,
region):
"""Plots a map of storm tracks (analysis track) in the SWIO, that had their genesis in a given MJO phase (pair)
Colour-codes the track according to the SWIO intensity category scale, using max winds from IBTrACS"""
# set up map of region
if region == "SH":
lat1 = 30
lat2 = -60
lon1 = -25
lon2 = 335
elif region == "SIO":
lat1 = 10
lat2 = -50
lon1 = 10
lon2 = 110
fig = plt.figure(figsize=(6, 3))
ax = fig.add_axes([0.05, 0.1, 0.9, 0.96])
m = Basemap(llcrnrlon=lon1,
llcrnrlat=lat2,
urcrnrlon=lon2,
urcrnrlat=lat1,
projection='mill',
resolution='l')
def draw_rectangle(lats, lons, m):
x, y = m(lons, lats)
xy = zip(x, y)
poly = Polygon(xy,
facecolor='None',
edgecolor='darkgrey',
linewidth=0.75,
alpha=0.75)
plt.gca().add_patch(poly)
RSMClats = [-40, 0, 0, -40]
RSMClons = [30, 30, 90, 90]
draw_rectangle(RSMClats, RSMClons, m)
m.fillcontinents(color='white')
m.drawcoastlines(linewidth=0.4, color='k')
m.drawcountries(linewidth=0.4, color='k')
colours = ['#fcc200', '#f05238', '#a1005c', '#08025c']
no_tracks = len(an_track_file_list)
#colors = cm.viridis(np.linspace(0, 1, no_tracks))
for file_in_list, i in zip(ib_track_file_list,
range(len(ib_track_file_list))):
# load in data from a specified TRACK file (reformatted & interpolated)
#an_data = np.genfromtxt(file_in_list, dtype=float, skip_header=1)
ib_data = np.genfromtxt(ib_track_file_list[i],
dtype=float,
skip_header=1)
obs_wind = ib_data[:, 10]
obs_dates = pl.get_dates(
ib_data) #get the start date of the ibtracs track
first_date = datetime.datetime.strptime(str(obs_dates[0]), "%Y%m%d%H")
#print "TC start date: ", first_date.strftime("%Y-%m-%d")
if first_date.strftime("%m-%d") == '02-29':
continue
else:
#print obs_dates[0]
#print first_date
z = MJOdates.index(first_date.strftime("%Y-%m-%d"))
#print "Date in MJO file at this index: ", MJOdates[z]
amp = MJOamp[z]
#print amp
#print "MJO phase: ", MJOphase[z]
#print "Amplitude: ", MJOamp[z]
if MJOphase[z] == MJO and MJOamp[z] >= 1.0:
print MJOdates[z]
print MJOphase[z]
print MJOamp[z]
for i in range(len(obs_wind)):
if obs_wind[i] > 10000:
obs_wind[i] = np.nan
max_wind = np.nanmax(obs_wind) * 3.6
if max_wind < 51:
c = 'khaki'
ls = 'dotted'
elif 51 <= max_wind < 63:
c = 'gold'
ls = 'dotted'
elif 63 <= max_wind < 89:
c = 'darkorange'
ls = 'dotted'
elif 89 <= max_wind < 118:
c = 'black'
ls = 'dotted'
elif 118 <= max_wind < 166:
c = 'orangered'
ls = '-'
elif 166 <= max_wind < 213:
c = 'firebrick'
ls = '-'
elif max_wind >= 213:
c = 'k'
ls = '-'
elif np.isnan(max_wind):
c = 'grey'
ls = '--'
#plot this forecast track
x, y = m(ib_data[:, 7], ib_data[:, 8])
m.plot(x, y, linewidth=1, color=c, linestyle=ls)
hurricane = get_hurricane_symbol()
xs, ys = m(ib_data[0, 7], ib_data[0, 8])
m.scatter(xs,
ys,
marker=hurricane,
edgecolors=c,
facecolors='None',
s=50,
linewidth=0.6)
else:
continue
#legend
tdf = plt.Line2D((0, 1), (0, 0),
color='khaki',
linestyle='dotted',
linewidth=1)
td = plt.Line2D((0, 1), (0, 0),
color='yellow',
linestyle='dotted',
linewidth=1)
tsm = plt.Line2D((0, 1), (0, 0),
color='darkorange',
linestyle='dotted',
linewidth=1)
tsf = plt.Line2D((0, 1), (0, 0),
color='black',
linestyle='dotted',
linewidth=1)
tc = plt.Line2D((0, 1), (0, 0), color='orangered', linewidth=1)
tci = plt.Line2D((0, 1), (0, 0), color='firebrick', linewidth=1)
tcti = plt.Line2D((0, 1), (0, 0), color='black', linewidth=1)
title = "2010-2018\n" + str(no_tracks) + " Cyclones\nCategory:"
#legend = ax.legend((tdf, td, tsm, tsf, tc, tci, tcti), ['Weak Depression', 'Tropical Depression', 'Moderate Tropical Storm', 'Strong Tropical Storm', 'Tropical Cyclone', 'Intense Tropical Cyclone', 'Very Intense Tropical Cyclone'], fontsize=5, loc='lower left')
#plt.setp(legend.get_title(), fontsize='5')
#save and close the plot
fig.subplots_adjust(wspace=0)
plt.savefig(outfile, bbox_inches='tight', pad_inches=0.05, dpi=500)
plt.close()
def plot_2D_density(Year, MapStyle):
'''
Parameters
- Year : between 1970-2015 | str
- MapStyle : style palette | str
Return
A 2D Geo Map: The denser the red marker in a country,
the more severe damages had taken place.
'''
# use regular expression to check the format
if not re.match(r'[\[|\(][0-9]{4}\,\s?[0-9]{4}[\]|\)]$', str(Year)):
raise NotIntervalError
# the starting year should be less than the ending yer
elif Year[0] >= Year[1]:
raise IntervalReverseError
# catch the missing value exceptions in 1993
elif Year == (1993, 1993):
print('Data of 1993 is not available in Global Terrorism Database.\n\
Click the link to learn why.\nhttps://www.start.umd.edu/gtd/faq/')
# catch the out of range yer interval input errors
elif (Year[0] < 1970) or (Year[1] > 2015):
raise IntervalLeakError
else:
if Year[0] == Year[1]: # catch the excetion the starting year and the ending year converge
df_gt = data.load_df()
df = df_gt[df_gt.year == Year[0]]
else:
df = ut.df_sel_btw_years(Year)
plt.figure(figsize=(18,10), frameon=False)
m = Basemap('mill')
m.drawcountries(linewidth=0.5,
linestyle='solid',
color='white',
antialiased=1,
ax=None,
zorder=None
)
# Background settings
if MapStyle == 'Blue Marble':
m.drawcoastlines()
m.bluemarble()
elif MapStyle == 'Etopo':
m.etopo()
else:
m.drawcoastlines(color='w')
m.drawcountries(color='w')
m.drawstates(color='w')
m.fillcontinents(color='lightblue',lake_color='w')
m.drawmapboundary(fill_color='w', color='w')
# get latitude and longitude
lat = ut.make_array(df, 'latitude')
lon = ut.make_array(df, 'longitude')
x,y = m(lon, lat)
m.plot(x, y, 'r^', marker='o', markersize=4, alpha=.3)
plt.title('Global Attack Density Plot: {}-{}'.format(Year[0], Year[1]), size=16)
plt.show()
def plot_basemap(lons, lats, size, color, labels=None, projection='global',
resolution='l', continent_fill_color='0.8',
water_fill_color='1.0', colormap=None, colorbar=None,
marker="o", title=None, colorbar_ticklabel_format=None,
show=True, fig=None, **kwargs): # @UnusedVariable
"""
Creates a basemap plot with a data point scatter plot.
:type lons: list/tuple of floats
:param lons: Longitudes of the data points.
:type lats: list/tuple of floats
:param lats: Latitudes of the data points.
:type size: float or list/tuple of floats
:param size: Size of the individual points in the scatter plot.
:type color: list/tuple of floats (or objects that can be
converted to floats, like e.g.
:class:`~obspy.core.utcdatetime.UTCDateTime`)
:param color: Color information of the individual data points to be
used in the specified color map (e.g. origin depths,
origin times).
:type labels: list/tuple of str
:param labels: Annotations for the individual data points.
:type projection: str, optional
:param projection: The map projection. Currently supported are
* ``"global"`` (Will plot the whole world.)
* ``"ortho"`` (Will center around the mean lat/long.)
* ``"local"`` (Will plot around local events)
Defaults to "global"
:type resolution: str, optional
:param resolution: Resolution of the boundary database to use. Will be
based directly to the basemap module. Possible values are
* ``"c"`` (crude)
* ``"l"`` (low)
* ``"i"`` (intermediate)
* ``"h"`` (high)
* ``"f"`` (full)
Defaults to ``"l"``. For compatibility, you may also specify any of the
Cartopy resolutions defined in :func:`plot_cartopy`.
:type continent_fill_color: Valid matplotlib color, optional
:param continent_fill_color: Color of the continents. Defaults to
``"0.9"`` which is a light gray.
:type water_fill_color: Valid matplotlib color, optional
:param water_fill_color: Color of all water bodies.
Defaults to ``"white"``.
:type colormap: str, any matplotlib colormap, optional
:param colormap: The colormap for color-coding the events as provided
in `color` kwarg.
The event with the smallest `color` property will have the
color of one end of the colormap and the event with the highest
`color` property the color of the other end with all other events
in between.
Defaults to None which will use the default matplotlib colormap.
:type colorbar: bool, optional
:param colorbar: When left `None`, a colorbar is plotted if more than one
object is plotted. Using `True`/`False` the colorbar can be forced
on/off.
:type title: str
:param title: Title above plot.
:type colorbar_ticklabel_format: str or function or
subclass of :class:`matplotlib.ticker.Formatter`
:param colorbar_ticklabel_format: Format string or Formatter used to format
colorbar tick labels.
:type show: bool
:param show: Whether to show the figure after plotting or not. Can be used
to do further customization of the plot before showing it.
:type fig: :class:`matplotlib.figure.Figure`
:param fig: Figure instance to reuse, returned from a previous
:func:`plot_basemap` call. If a previous basemap plot is reused, any
kwargs regarding the basemap plot setup will be ignored (i.e.
`projection`, `resolution`, `continent_fill_color`,
`water_fill_color`). Note that multiple plots using colorbars likely
are problematic, but e.g. one station plot (without colorbar) and one
event plot (with colorbar) together should work well.
"""
min_color = min(color)
max_color = max(color)
if any([isinstance(c, (datetime.datetime, UTCDateTime)) for c in color]):
datetimeplot = True
color = [
(np.isfinite(float(t)) and
date2num(getattr(t, 'datetime', t)) or
np.nan)
for t in color]
else:
datetimeplot = False
scal_map = ScalarMappable(norm=Normalize(min_color, max_color),
cmap=colormap)
scal_map.set_array(np.linspace(0, 1, 1))
# The colorbar should only be plotted if more then one event is
# present.
if colorbar is None:
if len(lons) > 1 and hasattr(color, "__len__") and \
not isinstance(color, (str, native_str)):
colorbar = True
else:
colorbar = False
if fig is None:
fig = plt.figure()
if projection == "local":
ax_x0, ax_width = 0.10, 0.80
elif projection == "global":
ax_x0, ax_width = 0.01, 0.98
else:
ax_x0, ax_width = 0.05, 0.90
if colorbar:
map_ax = fig.add_axes([ax_x0, 0.13, ax_width, 0.77])
cm_ax = fig.add_axes([ax_x0, 0.05, ax_width, 0.05])
else:
ax_y0, ax_height = 0.05, 0.85
if projection == "local":
ax_y0 += 0.05
ax_height -= 0.05
map_ax = fig.add_axes([ax_x0, ax_y0, ax_width, ax_height])
if projection == 'global':
bmap = Basemap(projection='moll', lon_0=round(np.mean(lons), 4),
resolution=_BASEMAP_RESOLUTIONS[resolution],
ax=map_ax)
elif projection == 'ortho':
bmap = Basemap(projection='ortho',
resolution=_BASEMAP_RESOLUTIONS[resolution],
area_thresh=1000.0, lat_0=round(np.mean(lats), 4),
lon_0=round(np.mean(lons), 4), ax=map_ax)
elif projection == 'local':
if min(lons) < -150 and max(lons) > 150:
max_lons = max(np.array(lons) % 360)
min_lons = min(np.array(lons) % 360)
else:
max_lons = max(lons)
min_lons = min(lons)
lat_0 = max(lats) / 2. + min(lats) / 2.
lon_0 = max_lons / 2. + min_lons / 2.
if lon_0 > 180:
lon_0 -= 360
deg2m_lat = 2 * np.pi * 6371 * 1000 / 360
deg2m_lon = deg2m_lat * np.cos(lat_0 / 180 * np.pi)
if len(lats) > 1:
height = (max(lats) - min(lats)) * deg2m_lat
width = (max_lons - min_lons) * deg2m_lon
margin = 0.2 * (width + height)
height += margin
width += margin
else:
height = 2.0 * deg2m_lat
width = 5.0 * deg2m_lon
# do intelligent aspect calculation for local projection
# adjust to figure dimensions
w, h = fig.get_size_inches()
aspect = w / h
if colorbar:
aspect *= 1.2
if width / height < aspect:
width = height * aspect
else:
height = width / aspect
bmap = Basemap(projection='aea',
resolution=_BASEMAP_RESOLUTIONS[resolution],
area_thresh=1000.0, lat_0=round(lat_0, 4),
lon_0=round(lon_0, 4),
width=width, height=height, ax=map_ax)
# not most elegant way to calculate some round lats/lons
def linspace2(val1, val2, N):
"""
returns around N 'nice' values between val1 and val2
"""
dval = val2 - val1
round_pos = int(round(-np.log10(1. * dval / N)))
# Fake negative rounding as not supported by future as of now.
if round_pos < 0:
factor = 10 ** (abs(round_pos))
delta = round(2. * dval / N / factor) * factor / 2
else:
delta = round(2. * dval / N, round_pos) / 2
new_val1 = np.ceil(val1 / delta) * delta
new_val2 = np.floor(val2 / delta) * delta
N = (new_val2 - new_val1) / delta + 1
return np.linspace(new_val1, new_val2, N)
N1 = int(np.ceil(height / max(width, height) * 8))
N2 = int(np.ceil(width / max(width, height) * 8))
parallels = linspace2(lat_0 - height / 2 / deg2m_lat,
lat_0 + height / 2 / deg2m_lat, N1)
# Old basemap versions have problems with non-integer parallels.
try:
bmap.drawparallels(parallels, labels=[0, 1, 1, 0])
except KeyError:
parallels = sorted(list(set(map(int, parallels))))
bmap.drawparallels(parallels, labels=[0, 1, 1, 0])
if min(lons) < -150 and max(lons) > 150:
lon_0 %= 360
meridians = linspace2(lon_0 - width / 2 / deg2m_lon,
lon_0 + width / 2 / deg2m_lon, N2)
meridians[meridians > 180] -= 360
bmap.drawmeridians(meridians, labels=[1, 0, 0, 1])
else:
msg = "Projection '%s' not supported." % projection
raise ValueError(msg)
# draw coast lines, country boundaries, fill continents.
map_ax.set_axis_bgcolor(water_fill_color)
bmap.drawcoastlines(color="0.4")
bmap.drawcountries(color="0.75")
bmap.fillcontinents(color=continent_fill_color,
lake_color=water_fill_color)
# draw the edge of the bmap projection region (the projection limb)
bmap.drawmapboundary(fill_color=water_fill_color)
# draw lat/lon grid lines every 30 degrees.
bmap.drawmeridians(np.arange(-180, 180, 30))
bmap.drawparallels(np.arange(-90, 90, 30))
fig.bmap = bmap
else:
error_message_suffix = (
". Please provide a figure object from a previous call to the "
".plot() method of e.g. an Inventory or Catalog object.")
try:
map_ax = fig.axes[0]
except IndexError as e:
e.args = tuple([e.args[0] + error_message_suffix] +
list(e.args[1:]))
raise
try:
bmap = fig.bmap
except AttributeError as e:
e.args = tuple([e.args[0] + error_message_suffix] +
list(e.args[1:]))
raise
# compute the native bmap projection coordinates for events.
x, y = bmap(lons, lats)
# plot labels
if labels:
if 100 > len(lons) > 1:
for name, xpt, ypt, _colorpt in zip(labels, x, y, color):
# Check if the point can actually be seen with the current bmap
# projection. The bmap object will set the coordinates to very
# large values if it cannot project a point.
if xpt > 1e25:
continue
map_ax.text(xpt, ypt, name, weight="heavy",
color="k", zorder=100,
path_effects=[
PathEffects.withStroke(linewidth=3,
foreground="white")])
elif len(lons) == 1:
map_ax.text(x[0], y[0], labels[0], weight="heavy", color="k",
path_effects=[
PathEffects.withStroke(linewidth=3,
foreground="white")])
# scatter plot is removing valid x/y points with invalid color value,
# so we plot those points separately.
try:
nan_points = np.isnan(np.array(color, dtype=np.float))
except ValueError:
# `color' was not a list of values, but a list of colors.
pass
else:
if nan_points.any():
x_ = np.array(x)[nan_points]
y_ = np.array(y)[nan_points]
size_ = np.array(size)[nan_points]
scatter = bmap.scatter(x_, y_, marker=marker, s=size_, c="0.3",
zorder=10, cmap=None)
scatter = bmap.scatter(x, y, marker=marker, s=size, c=color,
zorder=10, cmap=colormap)
if title:
plt.suptitle(title)
if colorbar:
if colorbar_ticklabel_format is not None:
if isinstance(colorbar_ticklabel_format, (str, native_str)):
formatter = FormatStrFormatter(colorbar_ticklabel_format)
elif hasattr(colorbar_ticklabel_format, '__call__'):
formatter = FuncFormatter(colorbar_ticklabel_format)
elif isinstance(colorbar_ticklabel_format, Formatter):
formatter = colorbar_ticklabel_format
locator = MaxNLocator(5)
else:
if datetimeplot:
locator = AutoDateLocator()
formatter = AutoDateFormatter(locator)
# Compat with old matplotlib versions.
if hasattr(formatter, "scaled"):
formatter.scaled[1 / (24. * 60.)] = '%H:%M:%S'
else:
locator = None
formatter = None
# normal case: axes for colorbar was set up in this routine
if "cm_ax" in locals():
cb_kwargs = {"cax": cm_ax}
# unusual case: reusing a plot that has no colorbar set up previously
else:
cb_kwargs = {"ax": map_ax}
cb = fig.colorbar(
mappable=scatter, cmap=colormap, orientation='horizontal',
ticks=locator, format=formatter, **cb_kwargs)
# Compat with old matplotlib versions.
if hasattr(cb, "update_ticks"):
cb.update_ticks()
if show:
plt.show()
return fig
lon_max = max(lon) + margin
m = Basemap(llcrnrlon=lon_min,
llcrnrlat=lat_min,
urcrnrlon=lon_max,
urcrnrlat=lat_max,
lat_0=(lat_max - lat_min)/2,
lon_0=(lon_max-lon_min)/2,
projection='merc',
resolution='h',
area_thresh=10000.,
)
m.drawcoastlines()
m.drawcountries()
m.drawstates()
# Colors
water = '#46bcec'
land = '#ffffff'
m.drawmapboundary(fill_color=water)
m.fillcontinents(color=land, lake_color=water)
# convert lat and lon to map projection coordinates
lons, lats = m(lon, lat)
# plot points as red dots
m.scatter(lons, lats, marker='o', c=colors, cmap='plasma', zorder=5, s=2)
plt.colorbar().set_label(f'{var_to_viz}', rotation=90)
plt.title(
f'Global {var_to_viz} at {datetime.datetime.now().strftime("%Y-%m-%d %H:%M:%S")}')
plt.savefig('maps/sensor_map.png', dpi=300)
fill_value=np.nan)
lon = np.mod(xsec['lon'] + 360, 360)
pts = np.vstack((lon, xsec['lat'])).T
xsec['data'][n, :] = interp(pts)
xsec['dates'].append(
datetime.datetime.strptime(output_date, '%Y %m %d %H %M'))
for xsec in transect_points:
print xsec['name']
# Plot transect
fig = plt.figure(figsize=[12.0, 4.0])
ax = fig.add_subplot(2, 1, 1)
m = Basemap(projection='cyl',llcrnrlat= -90,urcrnrlat=90,\
llcrnrlon=-180,urcrnrlon=180,resolution='c')
m.fillcontinents(color='tan', lake_color='lightblue')
m.drawcoastlines()
ax.plot(xsec['lon'], xsec['lat'], 'r-')
# Plot data
ax = fig.add_subplot(2, 1, 2)
dates = np.asarray(xsec['dates'], dtype='O')
idx = np.where(np.absolute(xsec['data']) > 1e10)
xsec['data'][idx] = np.nan
cf = ax.contourf(dates, xsec['dist'], xsec['data'].T)
cb = plt.colorbar(cf)
cb.set_label('Significant wave height (m)')
ax.set_xlabel('Date')
ax.set_ylabel('Distance along transect (km)')
plt.tight_layout()
plt.savefig('hovmoller_' + '_'.join(xsec['name'].split()) + '.png',
from mpl_toolkits.basemap import Basemap
import numpy as np
import matplotlib.pyplot as plt
# setup south polar stereographic basemap.
# The longitude lon_0 is at 6-o'clock, and the
# latitude circle boundinglat is tangent to the edge
# of the map at lon_0. Default value of lat_ts
# (latitude of true scale) is pole.
m = Basemap(projection='spstere', boundinglat=-10, lon_0=90, resolution='l')
m.drawcoastlines()
m.fillcontinents(color='coral', lake_color='aqua')
# draw parallels and meridians.
m.drawparallels(np.arange(-80., 81., 20.))
m.drawmeridians(np.arange(-180., 181., 20.))
m.drawmapboundary(fill_color='aqua')
# draw tissot's indicatrix to show distortion.
ax = plt.gca()
for y in np.linspace(19 * m.ymin / 20, m.ymin / 20, 10):
for x in np.linspace(19 * m.xmin / 20, m.xmin / 20, 10):
lon, lat = m(x, y, inverse=True)
poly = m.tissot(lon,lat,2.5,100,\
facecolor='green',zorder=10,alpha=0.5)
plt.title("South Polar Stereographic Projection")
plt.show()
#m = Basemap(lon_0=180)
#m = Basemap(llcrnrlon=80.,llcrnrlat=-10.,urcrnrlon=190.,urcrnrlat=50.,
m = Basemap(llcrnrlon=110.,
llcrnrlat=10.,
urcrnrlon=140.,
urcrnrlat=30.,
projection='lcc',
lat_1=20.,
lat_2=40.,
lon_0=120.,
resolution='h',
area_thresh=1000.)
m.drawmapboundary(fill_color='#A6CAE0', linewidth=0)
m.fillcontinents(color='grey', alpha=0.7, lake_color='grey', zorder=10)
m.drawcoastlines(linewidth=0.1, color="white")
m.drawparallels(np.arange(0, 70, 10), labels=[1, 1, 0, 0])
m.drawmeridians(np.arange(80, 190, 10), labels=[0, 0, 0, 1])
#----------------------------------------------------------------------------------------#
# NCEP BUFR
#----------------------------------------------------------------------------------------#
# filename
dtg = '17091712'
filename = 'gdas.satwnd.tm00.bufr_d.' + dtg
# string
hdrstr = 'SAID CLAT CLON YEAR MNTH DAYS HOUR MINU SWCM SAZA GCLONG SCCF SWQM'
obstr = 'HAMD PRLC WDIR WSPD'
qcstr = 'OGCE GNAP PCCF'
if (int(mm) == 10): monIndx = 3
timeIndx = yearIndx + monIndx
infile = '../Data/heat_content_anomaly_0-700_seasonal.nc'
outpng = './Images/Seasonal/Orig/heat_content_anomaly_0-700_' + yyyy + '-' + mm + '.png'
fig = plt.figure(figsize=(figxsize, figysize))
ax1 = fig.add_axes([0.0, 0.0, 1.0, 1.0], frameon=False, axisbg='#F5F5F5')
# setup basemap.
m = Basemap(projection='cyl',llcrnrlat=-90,urcrnrlat=90,area_thresh=10000,\
llcrnrlon=-180,urcrnrlon=180,resolution='l')
#m.drawlsmask(land_color='#E2E2E2', ocean_color='#E2E2E2', lakes=False)
cdict1 = gmtColormap('./OceanHeatContent.cpt')
cmap_temp = LinearSegmentedColormap('cmap_temp', cdict1)
levs = np.arange(101) - 50
m.fillcontinents(color='#E2E2E2', lake_color='#E2E2E2')
#m.drawcoastlines(color='#787878',linewidth=0.15)
#m.drawrivers(color='#E2E2E2',linewidth=1)
#plt.show()
plt.savefig(outpng,
dpi=figdpi,
orientation='landscape',
bbox_inches='tight',
pad_inches=0.0)
grand_total_rossby_count = 0
grand_total_lpt_count = 0
## Set up figure
fig = plt.figure(figsize=(8, 6))
ax1 = fig.add_subplot(211)
## Plot
# set up orthographic map projection with
# perspective of satellite looking down at 50N, 100W.
# use low resolution coastlines.
map = Basemap(llcrnrlon=0.,llcrnrlat=-50.,urcrnrlon=360.,urcrnrlat=50.,\
resolution='l',projection='merc')
# draw coastlines, country boundaries, fill continents.
map.fillcontinents(color='wheat', zorder=1)
map.drawcoastlines(color='k', linewidth=0.7, zorder=10)
map.drawcountries(color='k', linewidth=0.5, zorder=10)
# draw the edge of the map projection region (the projection limb)
map.drawmapboundary()
# draw lat/lon grid lines every 30 degrees.
map.drawmeridians(np.arange(0, 360, 30), zorder=15)
map.drawparallels(np.arange(-90, 90, 30), zorder=15)
fout = (out_dir + '/rossby_system_tracks_20yrs__map_with_lpt__' +
season_label + '.png')
for fn in sorted(glob.glob(dir + '/TIMECLUSTERS_*.rejoin2.nc')):
# Skip RT 2018 for now.
if "2018112721" in fn:
WU = WU / len(b) # period average wind
WV = WV / len(b)
modulus = np.sqrt(WU**2 + WV**2) # normalized vectors
U = WU / modulus
V = WV / modulus
#############################
### Plotting with Basemap ###
#############################
m = Basemap(projection='npstere',boundinglat=65,lat_0=90,lat_ts=70,lon_0=-45,\
resolution='l',round=False)
#m.drawcoastlines()
m.fillcontinents(color='grey') #,lake_color='aqua')
#m.drawparallels(np.arange(-80.,81.,20.))
#m.drawmeridians(np.arange(-180.,181.,20.))
#m.drawmapboundary(fill_color='aqua')
x, y = m(lon1, lat1) # transforms from spherical til flat
Q = m.quiver(x, y, U, V, modulus,
scale=40) #,units='xy',width=8,angles='xy',scale_units='xy',\
#,headlength=5,headwidth=5,latlon=False)#,cmap=cm.seismic,
cb = m.colorbar()
plt.set_cmap('jet')
cb.set_label('m/s')
#cb.set_clim(np.nanmin(modulus),np.nanmax(modulus))
#qk = plt.quiverkey(Q, 0.1, 0.95, 1.5, 'm/s', labelpos='W')
plt.title("Winds _ " + str(b[0]) + '-' + str(b[-1] + 1) + " average")
def plot():
file = 'TFtempsalfluo.csv'
a = 0.1
df_tf = pd.read_csv(file)
df_tf_fluo = pd.read_csv('TFfluo_raw.csv')
df_tf_temp= pd.read_csv('TFtemp_raw.csv')
df_tf_sal= pd.read_csv('TFsal_raw.csv')
df_tf = df_tf[df_tf.latitude > 67.5]
df_tf = df_tf[df_tf.latitude < 69.5]
df_tf_sal = df_tf_sal[df_tf_sal.latitude > 67.5]
df_tf_sal = df_tf_sal[df_tf_sal.latitude < 69.5]
df_tf_fluo = df_tf_fluo[df_tf_fluo.latitude > 67.5]
df_tf_fluo = df_tf_fluo[df_tf_fluo.latitude < 69.5]
df_tf_temp = df_tf_temp[df_tf_temp.latitude > 67.5]
df_tf_temp = df_tf_temp[df_tf_temp.latitude < 69.5]
fig = plt.figure(figsize=(11.27,5.27), dpi=100)
ax = plt.subplot2grid((3, 2), (0, 0), rowspan = 3)
ax1 = plt.subplot2grid((3, 2), (0, 1), rowspan = 1)
ax2 = plt.subplot2grid((3, 2), (1, 1), rowspan = 1)
ax3 = plt.subplot2grid((3, 2), (2, 1), rowspan = 1)
Fmt = mdates.DateFormatter('%b')
map = Basemap(
resolution='i',projection='stere',\
lat_0=70,lon_0=14,
llcrnrlon = 12 ,llcrnrlat = 67,
urcrnrlon = 21 ,urcrnrlat = 70, ax = ax )
map.drawmapboundary(fill_color='#cae2f7')
map.fillcontinents(color='#bdad95')
map.drawcoastlines(linewidth=0.5)
parallels = [67,68,69,70]
meridians = [5,10,15,20]
map.drawparallels(parallels, labels = [1,1,0,0]) # draw parallels
map.drawmeridians(meridians, labels = [0,0,1,1]) # draw parallels
map.scatter(df_tf.longitude.values,df_tf.latitude.values,latlon = True,
s = 15,ax = ax ,zorder = 5,c='#1e5e75', alpha = 0.7,label = 'TrollFjord \nFerry') #)
df_tf = df_tf.set_index('time')
df_tf.index= pd.to_datetime(df_tf.index)
df_tf_fluo = df_tf_fluo.set_index('time')
df_tf_fluo.index= pd.to_datetime(df_tf_fluo.index)
df_tf_temp = df_tf_temp.set_index('time').sort_index()
df_tf_temp.index= pd.to_datetime(df_tf_temp.index)
df_tf_sal = df_tf_sal.set_index('time').sort_index()
df_tf_sal.index= pd.to_datetime(df_tf_sal.index)
df_tf_fluo_1 = df_tf_fluo.where(df_tf_fluo['chla_fluorescence'] < 0.94)
df_tf_fluo_2 = df_tf_fluo.where(df_tf_fluo['chla_fluorescence'] > 0.96)
ax1.scatter(df_tf_sal.index, df_tf_sal['ctd_salinity'].values,
label = 'salinity all',c = '#1e5e75',alpha = a)
ax2.scatter(df_tf_temp.index, df_tf_temp['ctd_temperature'].values,
label = 'temperature all raw',c = '#1e5e75',alpha = a)
ax3.scatter(df_tf_fluo_1.index, df_tf_fluo_1['chla_fluorescence'].values,
label = 'fluorescence all raw',c = '#1e5e75',alpha = 0.2)
ax3.scatter(df_tf_fluo_2.index, df_tf_fluo_2['chla_fluorescence'].values,
c = '#1e5e75',alpha = 0.2)
col = '#b21e1e'
df_1 = pd.read_csv(file)
df_1 = df_1.set_index('time')
df_1.index = pd.to_datetime(df_1.index)
df_1 = df_1[df_1.latitude > 67.6]
df_1 = df_1[df_1.latitude < 68]
df_tf_sal = df_tf_sal[df_tf_sal.latitude > 67.6]
df_tf_sal = df_tf_sal[df_tf_sal.latitude < 68]
group_sal = df_tf_sal.groupby(df_tf_sal.index.dayofyear).median()
group_sal.index = pd.to_datetime(group_sal.index,unit = 'D',origin = '2018-01-01')
ax1.plot(group_sal.index.values,group_sal['ctd_salinity'].values,c = col,linewidth = 3,
marker='o',label = 'median ctd_salinity', markeredgecolor = 'k')
df_tf_temp = df_tf_temp[df_tf_temp.latitude > 67.6]
df_tf_temp = df_tf_temp[df_tf_temp.latitude < 68]
group = df_tf_temp.groupby(df_tf_temp.index.dayofyear).median()
group.index = pd.to_datetime(group.index,unit = 'D',origin = '2018-01-01')
ax2.plot(group.index.values,group['ctd_temperature'].values,c = col,linewidth = 3,
marker='o',label = 'median ctd_temperature', markeredgecolor = 'k')
map.scatter(df_1.longitude.values,df_1.latitude.values,latlon = True,
s = 35,ax = ax ,c = col, edgecolors = 'k',zorder = 9,alpha = 1) #)
df_fluo = pd.read_csv('TFfluo_raw.csv')
df_fluo = df_fluo.set_index('time')
df_fluo.index = pd.to_datetime(df_fluo.index)
df_fluo = df_fluo[df_fluo.latitude > 67.6]
df_fluo = df_fluo[df_fluo.latitude < 68]
df_fluo_1 = df_fluo.where(df_fluo['chla_fluorescence'] < 0.94)
df_fluo_2 = df_fluo.where(df_fluo['chla_fluorescence'] > 0.96)
df_fluo = pd.concat([df_fluo_1,df_fluo_2],join = 'outer')
group_f = df_fluo.groupby(df_fluo.index.dayofyear).median()
group_f.index = pd.to_datetime(group_f.index,unit = 'D',origin = '2018-01-01')
ax3.plot(group_f.index, group_f['chla_fluorescence'].values,
label = 'median chla_fluorescence',c = col,linewidth = 3,marker='o',markeredgecolor = 'k')
r'''with open(r"C:\Users\elp\OneDrive\Python_workspace\climatologyjs\climatology.json") as data_file:
data = json.load(data_file)
d = pd.DataFrame(data)
#coord = data['properties']['coordinates']
days = ["2018-W{}".format(w) for w in d['week']]
d['days']= [datetime.datetime.strptime(n + '-0', "%Y-W%W-%w") for n in days]
ax1.plot(d['days'], d['ctd_salinity'].values,label = 'salinity')
ax2.plot(d['days'], d['ctd_temperature'].values,label = 'temperature')
ax3.plot(d['days'], d['chla_fluorescence'].values,label = 'fluorescence') '''
axes = (ax,ax1,ax2,ax3)
for a in axes:
a.xaxis.set_major_formatter(Fmt)
a.legend()
plt.tight_layout()
#plt.show()
plt.savefig('TF_Ferrybox.png')
from grib2 import Grib2Decode
from pylab import *
from mpl_toolkits.basemap import Basemap
grbs = Grib2Decode('../sampledata/dspr.temp.grb')
lats, lons = grbs[0].grid()
llcrnrlon = lons[0, 0]
llcrnrlat = lats[0, 0]
urcrnrlon = lons[-1, -1]
urcrnrlat = lats[-1, -1]
print llcrnrlat, llcrnrlon, urcrnrlat, urcrnrlon
rsphere = (grbs[0].earthRmajor, grbs[0].earthRminor)
lat_ts = grbs[0].proj4_lat_ts
lon_0 = grbs[0].proj4_lon_0
projection = grbs[0].proj4_proj
m = Basemap(llcrnrlon=llcrnrlon,
llcrnrlat=llcrnrlat,
urcrnrlon=urcrnrlon,
urcrnrlat=urcrnrlat,
rsphere=rsphere,
lon_0=lon_0,
lat_ts=lat_ts,
resolution='i',
projection=projection)
x, y = m(lons, lats)
m.scatter(x.flat, y.flat, 1, marker='o', color='k', zorder=10)
m.drawcoastlines()
m.fillcontinents()
title('Mercator Grid (Puerto Rico)')
show()
from mpl_toolkits.basemap import Basemap
import matplotlib.pyplot as plt
import numpy as np
# set up orthographic map projection with
# perspective of satellite looking down at 50N, 100W.
# use low resolution coastlines.
# don't plot features that are smaller than 1000 square km.
map = Basemap(projection='ortho',
lat_0=50,
lon_0=-100,
resolution='l',
area_thresh=1000.)
# draw coastlines, country boundaries, fill continents.
map.drawcoastlines()
map.drawcountries()
map.fillcontinents(color='coral')
# draw the edge of the map projection region (the projection limb)
map.drawmapboundary()
# draw lat/lon grid lines every 30 degrees.
map.drawmeridians(np.arange(0, 360, 30))
map.drawparallels(np.arange(-90, 90, 30))
plt.show()
np.min(lat[data_bounds]),
np.max(lon[data_bounds]),
np.max(lat[data_bounds])
] # set bounds for plotting
# figure routine for visualization
fig = plt.figure(figsize=(9, 4), dpi=200)
n_add = 0 # for zooming in and out
m = Basemap(llcrnrlon=bbox[0] - n_add,
llcrnrlat=bbox[1] - n_add,
urcrnrlon=bbox[2] + n_add,
urcrnrlat=bbox[3] + n_add,
resolution='i',
projection='cyl')
m.fillcontinents(color='#d9b38c', lake_color='#bdd5d5',
zorder=1) # continent colors
m.drawmapboundary(fill_color='#bdd5d5', zorder=0) # ocean color
m.drawcoastlines(linewidth=0.5)
m.drawcountries(linewidth=0.25)
m.drawstates(zorder=2)
m.pcolormesh(lon.data, lat.data, data, latlon=True,
zorder=999) # plotting actual LST data
parallels = np.linspace(bbox[1], bbox[3], 5.)
m.drawparallels(parallels,
labels=[True, False, False, False],
zorder=2,
fontsize=8)
meridians = np.linspace(bbox[0], bbox[2], 5.)
m.drawmeridians(meridians,
labels=[False, False, False, True],
zorder=1,
pvalue_onq,
colors='None',
hatches=['....'],
linewidths=0.4)
ax1.annotate(r'\textbf{ON}',
xy=(0, 0),
xytext=(0.35, 1.05),
xycoords='axes fraction',
fontsize=25,
color='dimgrey',
rotation=0)
cmap = ncm.cmap('nrl_sirkes')
cs.set_cmap(cmap)
m.fillcontinents(color='dimgray')
###########################################################################
ax2 = plt.subplot(132)
m = Basemap(projection='ortho',
lon_0=0,
lat_0=89,
resolution='l',
area_thresh=10000.)
var, lons_cyclic = addcyclic(diff_dj, lon)
var, lons_cyclic = shiftgrid(180., var, lons_cyclic, start=False)
lon2d, lat2d = np.meshgrid(lons_cyclic, lat)
x, y = m(lon2d, lat2d)
def plot_global_map_weights(self):
"""
Plot global map of event and stations
"""
# import basemap here due to error
from mpl_toolkits.basemap import Basemap
# ax = plt.subplot(211)
plt.title(self.cmtsource.eventname + "_Weights")
m = Basemap(projection='cyl', lon_0=0.0, lat_0=0.0, resolution='c')
m.drawcoastlines()
m.fillcontinents()
m.drawparallels(np.arange(-90., 120., 30.))
m.drawmeridians(np.arange(0., 420., 60.))
m.drawmapboundary()
#x, y = m(self.sta_lon, self.sta_lat)
x, y = self.sta_lon, self.sta_lat
w = [meta.weights for meta in self.metas]
print(w)
w /= max(w)
w = map(float, w)
#w = map(str, w)
w = list(w)
s = [np.sqrt(x) * 100 for x in w]
w = [x**0.5 for x in w]
#print(self.sta_lon,self.sta_lat)
#print(self.metas)
#print(len(self.metas),len(self.sta_lon))
#print(w)
m.scatter(x, y, s=s, c=w, marker="^", cmap='hsv', zorder=3)
cmt_lat = self.cmtsource.latitude
cmt_lon = self.cmtsource.longitude
focmecs = get_cmt_par(self.cmtsource)[:6]
ax = plt.gca()
if self.mode == 'regional':
minlon = min(self.sta_lon)
maxlon = max(self.sta_lon)
minlat = min(self.sta_lat)
maxlat = max(self.sta_lat)
padding = 0.2
m.drawparallels(np.arange(-90., 120., padding),
labels=[1, 1, 0, 0],
fmt="%.2f",
dashes=[2, 2])
m.drawmeridians(np.arange(0., 420., padding),
labels=[0, 0, 1, 1],
fmt="%.2f",
dashes=[2, 2])
m.etopo()
ax.set_xlim(minlon - padding, maxlon + padding)
ax.set_ylim(minlat - padding, maxlat + padding)
width_beach = min((maxlon + 2 * padding - minlon) / (40 * padding),
(maxlat + 2 * padding - minlat) / (40 * padding))
bb = beach(focmecs,
xy=(cmt_lon, cmt_lat),
width=width_beach,
linewidth=1,
alpha=1.0)
bb.set_zorder(10)
ax.add_collection(bb)
def contourMap(myCDF, myvar, mylev):
"""Get the apporporiate grid"""
tlat = myCDF.variables["lat"][:]
tlon = myCDF.variables["lon"][:]
levels = myCDF.variables["lev"][:]
times = myCDF.variables["time"][:]
mylevindex = 0
for lev in xrange(len(levels)):
if (float(levels[lev]) == float(mylev)):
mylevindex = lev
print "Will plot depth: %s m (index=%s)" % (mylev, lev)
mydata = np.squeeze(myCDF.variables[myvar][0, mylevindex, :, :])
refdate = datetime.datetime(1948, 1, 1)
current = refdate + datetime.timedelta(days=times[0])
print "Date of file is: %s" % (current)
plt.figure(figsize=(10, 10), frameon=False)
map = Basemap(llcrnrlon=-18.0,
llcrnrlat=46.0,
urcrnrlon=25.5,
urcrnrlat=67.5,
resolution='i',
projection='tmerc',
lon_0=0,
lat_0=50,
area_thresh=50.)
delta = 20.
levels = np.arange(mydata.min(), mydata.max(),
(mydata.max() - mydata.min()) / delta)
levels = np.arange(272, 288, 0.5)
print "Range of input data: %s - %s" % (mydata.min(), mydata.max())
print np.shape(tlon), np.shape(tlat), np.shape(mydata)
tlons, tlats = np.meshgrid(tlon, tlat)
x, y = map(tlons, tlats)
map.drawcoastlines()
map.fillcontinents(color='grey')
map.drawcountries()
map.drawmapboundary()
# map.drawmeridians(np.arange(0,360,1))
# map.drawparallels(np.arange(0,90,1))
CS1 = map.contourf(x,
y,
mydata,
levels,
cmap=cm.get_cmap('RdBu_r',
len(levels) - 1),
alpha=1.0)
plt.colorbar(CS1, orientation='vertical', extend='both', shrink=0.5)
if current.month < 10:
currentdate = str(current.year) + '0' + str(current.month)
else:
currentdate = str(current.year) + str(current.month)
if not os.path.exists('figures'):
os.makedirs('figures')
plotfile = 'figures/rectangular_' + str(myvar) + '_yyyymm_' + str(
currentdate) + 'lev_' + str(mylev) + '.pdf'
print plotfile
plt.savefig(plotfile, bbox_inches='tight')
# plt.show()
plt.close()
from mpl_toolkits.basemap import Basemap
import matplotlib.pyplot as plt
map = Basemap(llcrnrlon=-0.5,
llcrnrlat=39.8,
urcrnrlon=4.,
urcrnrlat=43.,
resolution='i',
projection='tmerc',
lat_0=39.5,
lon_0=1)
map.drawmapboundary(fill_color='aqua')
map.fillcontinents(color='#ddaa66', lake_color='aqua')
map.drawcoastlines()
map.readshapefile('./stockholm/data/3D_Block/sample_files/comarques',
'comarques')
lightning_info = map.readshapefile(
'./stockholm/data/3D_Block/sample_files/lightnings', 'lightnings')
print lightning_info
for info, lightning in zip(map.lightnings_info, map.lightnings):
if float(info['amplitude']) < 0:
marker = '_'
else:
marker = '+'
map.plot(lightning[0],
lightning[1],
#define the figure
fig, axes = plt.subplots(1,1,figsize=(12, 10), facecolor='w', edgecolor='k')
#get simulation dates and length
sim_start_date = dateutil.parser.parse(str(PES.getHeaderAttribute(p_header, 'SIMULATION_START_DATE')))
sim_start_datetime = dateutil.parser.parse(str(PES.getHeaderAttribute(p_header, 'SIMULATION_START_DATE')) + str(PES.getHeaderAttribute(p_header, 'SIMULATION_START_TIME')))
sim_end_date = dateutil.parser.parse(str(PES.getHeaderAttribute(p_header, 'SIMULATION_END_DATE')))
simulation_length = sim_start_date - sim_end_date
day_of_year = sim_start_date.timetuple().tm_yday
#create a basemap instance
m = Basemap(width=4700000,height=4700000, resolution='l',projection='stere',lat_0=70,lon_0=-83.)
m.drawcoastlines(linewidth=0.5)
m.drawmapboundary(fill_color = '#084B8A', zorder = 0)
m.fillcontinents(color = '#D4BD8B', lake_color = '#084B8A', zorder=0)
parallels = np.arange(0.,81,10.) # labels = [left,right,top,bottom]
m.drawparallels(parallels,labels=[False,True,True,False])
meridians = np.arange(10.,351.,20.)
m.drawmeridians(meridians,labels=[True,False,False,True])
#sea ice and snow info
m.readshapefile('/Users/mcallister/projects/INP/NOAA snow and ice 4km-GEOtiff/ims2014195_4km_GIS_v1.2/test/test_WGS84', 'surface_cover', drawbounds = False)
#snow
i = 0
patches = []
for info, shape in zip(m.surface_cover_info, m.surface_cover):
if info['DN'] ==4 and info['RINGNUM'] ==1:
patches.append(Polygon(np.array(shape), True) )
i+=1
axa[0].text(xpt, ypt, 'uwnd')
cob = m.pcolor(x,
y,
slope_ccmp_wspd,
vmin=vmin,
vmax=vmax,
cmap=cmap_anom,
ax=axa[1],
rasterized=True)
axa[1].text(xpt, ypt, 'wspd')
for i, ax in enumerate(axa.flatten()):
ax.autoscale(enable=True, axis='both', tight=True)
m.drawcoastlines(linewidth=1.25, ax=ax)
m.fillcontinents(color='0.8', ax=ax, zorder=2)
if i % 2 == 0:
m.drawparallels(np.arange(-80, 81, 20),
labels=[1, 0, 0, 0],
linewidth=0,
ax=ax)
m.drawmeridians(np.arange(0, 360, 90),
labels=[0, 0, 0, 1],
linewidth=0,
yoffset=0.5e6,
ax=axa[1])
box = axa[0].get_position()
tl = fig.add_axes([box.x0 * 1.1 + box.width * 1., box.y0, 0.02, box.height])
bounds = np.linspace(vmin, vmax, ncols)
def plot_global_map(self):
"""
Plot global map of event and stations
"""
# import basemap here due to error
from mpl_toolkits.basemap import Basemap
# ax = plt.subplot(211)
plt.title(self.cmtsource.eventname)
m = Basemap(projection='cyl', lon_0=0.0, lat_0=0.0, resolution='c')
m.drawcoastlines()
m.fillcontinents()
m.drawparallels(np.arange(-90., 120., 30.))
m.drawmeridians(np.arange(0., 420., 60.))
m.drawmapboundary()
x, y = m(self.sta_lon, self.sta_lat)
#print(self.sta_lon,self.sta_lat)
#print(self.metas)
#print(len(self.metas),len(self.sta_lon))
#print(w)
plt.scatter(x,
y,
s=30,
c='red',
cmap='afmhot',
marker="^",
edgecolor="k",
linewidth=0.3,
zorder=3)
cmt_lat = self.cmtsource.latitude
cmt_lon = self.cmtsource.longitude
focmecs = get_cmt_par(self.cmtsource)[:6]
ax = plt.gca()
if self.mode == 'regional':
minlon = min(self.sta_lon)
maxlon = max(self.sta_lon)
minlat = min(self.sta_lat)
maxlat = max(self.sta_lat)
padding = 0.2
m.drawparallels(np.arange(-90., 120., padding),
labels=[1, 1, 0, 0],
fmt="%.2f",
dashes=[2, 2])
m.drawmeridians(np.arange(0., 420., padding),
labels=[0, 0, 1, 1],
fmt="%.2f",
dashes=[2, 2])
m.etopo()
ax.set_xlim(minlon - padding, maxlon + padding)
ax.set_ylim(minlat - padding, maxlat + padding)
width_beach = min((maxlon + 2 * padding - minlon) / (40 * padding),
(maxlat + 2 * padding - minlat) / (40 * padding))
else:
width_beach = 20
bb = beach(focmecs,
xy=(cmt_lon, cmt_lat),
width=width_beach,
linewidth=1,
alpha=1.0)
bb.set_zorder(10)
ax.add_collection(bb)
float(space_station_location['iss_position']['longitude'])
import os
os.environ[
'PROJ_LIB'] = r'C:\Users\HP\Anaconda3\pkgs\proj4-5.2.0-ha925a31_1\Library\share'
# Let's plot the ISS current location
# You will need to pip install Basemap
from mpl_toolkits.basemap import Basemap
# Set the dimension of the figure
plt.figure(figsize=(16, 8))
# Make the background
m = Basemap(llcrnrlon=-180, llcrnrlat=-65, urcrnrlon=180, urcrnrlat=80)
m.drawmapboundary(fill_color='#A6CAE0', linewidth=0)
m.fillcontinents(color='grey', alpha=0.3)
m.drawcoastlines(linewidth=0.1, color="white")
import requests
r = requests.get(url='http://api.open-notify.org/astros.json')
r.json()
r = requests.get(url='http://api.open-notify.org/iss-now.json')
space_station_location = (r.json())
m.scatter(space_station_location['iss_position']['latitude'],
space_station_location['iss_position']['longitude'],
s=500,
alpha=0.4,
color='blue')
import matplotlib.pyplot as plt
# set of latitudes and longitudes for plotting points
latSt = [52.1017, 52.9533, 50.905378, 49.9135, 51.1919]
lonSt = [5.1783, 4.7899, 4.457858, 5.5044, 3.0641]
# define figure attributes
plt.figure(num=None, figsize=(16, 9), dpi=80, facecolor='w', edgecolor='k')
# define map attributes
m = Basemap(width=1400000,height=700000,
resolution='i',projection='eqdc',\
lat_1=50.,lat_2=54,lat_0=52,lon_0=4)
m.drawcoastlines()
m.drawcountries()
m.fillcontinents(color='lightsage', lake_color='lightblue')
m.drawmapboundary(fill_color='lightblue')
m.drawmapscale(10.7,
49.1,
4,
52,
200,
barstyle='fancy',
units='km',
fontsize=12,
yoffset=None,
labelstyle='simple',
fontcolor='k',
fillcolor1='w',
fillcolor2='k',
ax=None,
import matplotlib.pyplot as plt
from mpl_toolkits.basemap import Basemap
from matplotlib.path import Path
import matplotlib.patches as patches
fig = plt.figure()
ax1 = plt.subplot2grid((2, 2), (0, 0))
ax2 = plt.subplot2grid((2, 2), (1, 0))
ax3 = plt.subplot2grid((2, 2), (0, 1), rowspan=2)
map1 = Basemap(projection='ortho', lon_0=0, lat_0=40, ax=ax1)
map1.drawmapboundary(fill_color='#9999FF')
map1.fillcontinents(color='#ddaa66', lake_color='#9999FF')
map1.drawcoastlines()
map2 = Basemap(projection='cyl',
llcrnrlon=-15,
llcrnrlat=30,
urcrnrlon=15.,
urcrnrlat=50.,
resolution='i',
ax=ax2)
map2.drawmapboundary(fill_color='#9999FF')
map2.fillcontinents(color='#ddaa66', lake_color='#9999FF')
map2.drawcoastlines()
map3 = Basemap(llcrnrlon=-1.,
llcrnrlat=37.5,
# setup Lambert Conformal basemap.
m = Basemap(llcrnrlon=-95.,
llcrnrlat=30.,
urcrnrlon=-75.,
urcrnrlat=45.,
projection='mill',
resolution='i')
# projection='merc', area_thresh=1000,
# resolution='i',lat_1=45.,lat_2=55,lat_0=40,lon_0=-85.)
# draw coastlines and fill the continents (alpha value is set to partial transparancy because for some
# reason the fill is over top the quivers used to denote the wind vectors
m.drawcoastlines()
m.drawstates()
m.fillcontinents(color='0.8')
m.drawparallels(np.arange(30, 45, 5), labels=[1, 1, 0, 0])
m.drawmeridians(np.arange(-95, -75, 5), labels=[0, 0, 0, 1])
# draw coastlines and fill the continents (alpha value is set to partial transparancy because for some
# reason the fill is over top the quivers used to denote the wind vectors
m.drawcoastlines()
m.drawstates()
m.plot(0, 0, 'g^', label='Site Online')
m.plot(0, 0, 'r^', label='Site Cloudy')
m.plot(0, 0, 'y^', label='No Cloud Data')
m.plot(0, 0, 'rx', label='Site Offline')
for s in sites:
# Parse the cloud data
def latview(var, tindex, latitude, gridid, filename=None, \
cmin=None, cmax=None, clev=None, fill=False, \
contour=False, d=4, lonrange=None, hrange=None,\
fts=None, title=None, map=False, \
pal=None, clb=True, outfile=None):
"""
latview(var, tindex, latitude, gridid, {optional switch})
optional switch:
- filename if defined, load the variable from file
- cmin set color minimum limit
- cmax set color maximum limit
- clev set the number of color step
- fill use contourf instead of pcolor
- contour overlay contour (request fill=True)
- d contour density (default d=4)
- lonrange longitude range
- hrange h range
- fts set font size (default: 12)
- title add title to the plot
- map if True, draw a map showing islice location
- pal set color map (default: cm.jet)
- clb add colorbar (defaul: True)
- outfile if defined, write figure to file
plot a constante-latitudinal slice of variable var. If filename
is provided, var must be a string and the variable will be load
from the file.
grid can be a grid object or a gridid. In the later case, the grid
object correponding to the provided gridid will be loaded.
"""
# get grid
if type(gridid).__name__ == 'ROMS_Grid':
grd = gridid
else:
grd = pyroms.grid.get_ROMS_grid(gridid)
# get variable
if filename == None:
var = var
else:
data = pyroms.io.Dataset(filename)
var = data.variables[var]
Np, Mp, Lp = grd.vgrid.z_r[0,:].shape
if tindex == -1:
assert len(var.shape) == 3, 'var must be 3D (no time dependency).'
N, M, L = var.shape
else:
assert len(var.shape) == 4, 'var must be 4D (time plus space).'
K, N, M, L = var.shape
# determine where on the C-grid these variable lies
if N == Np and M == Mp and L == Lp:
Cpos='rho'
lon = grd.hgrid.lon_vert
lat = grd.hgrid.lat_vert
mask = grd.hgrid.mask_rho
if N == Np and M == Mp and L == Lp-1:
Cpos='u'
lon = 0.5 * (grd.hgrid.lon_vert[:,:-1] + grd.hgrid.lon_vert[:,1:])
lat = 0.5 * (grd.hgrid.lat_vert[:,:-1] + grd.hgrid.lat_vert[:,1:])
mask = grd.hgrid.mask_u
if N == Np and M == Mp-1 and L == Lp:
Cpos='v'
lon = 0.5 * (grd.hgrid.lon_vert[:-1,:] + grd.hgrid.lon_vert[1:,:])
lat = 0.5 * (grd.hgrid.lat_vert[:-1,:] + grd.hgrid.lat_vert[1:,:])
mask = grd.hgrid.mask_v
# get constante-lat slice
if tindex == -1:
var = var[:,:,:]
else:
var = var[tindex,:,:,:]
if fill == True:
latslice, zs, lons, lats, = pyroms.tools.latslice(var, latitude, grd, Cpos)
else:
latslice, zs, lons, lats, = pyroms.tools.latslice(var, latitude, grd, Cpos, vert=True)
# plot
if cmin is None:
cmin = latslice.min()
else:
cmin = float(cmin)
if cmax is None:
cmax = latslice.max()
else:
cmax = float(cmax)
if clev is None:
clev = 100.
else:
clev = float(clev)
dc = (cmax - cmin)/clev ; vc = np.arange(cmin,cmax+dc,dc)
if pal is None:
pal = cm.jet
else:
pal = pal
if fts is None:
fts = 12
else:
fts = fts
#pal.set_over('w', 1.0)
#pal.set_under('w', 1.0)
#pal.set_bad('w', 1.0)
pal_norm = colors.BoundaryNorm(vc,ncolors=256, clip = False)
# clear figure
#plt.clf()
if map:
# set axes for the main plot in order to keep space for the map
if fts < 12:
ax=None
else:
ax = plt.axes([0.15, 0.08, 0.8, 0.65])
else:
if fts < 12:
ax=None
else:
ax=plt.axes([0.15, 0.1, 0.8, 0.8])
if fill:
cf = plt.contourf(lons, zs, latslice, vc, cmap = pal, norm = pal_norm, axes=ax)
else:
cf = plt.pcolor(lons, zs, latslice, cmap = pal, norm = pal_norm, axes=ax)
if clb:
clb = plt.colorbar(cf, fraction=0.075,format='%.2f')
for t in clb.ax.get_yticklabels():
t.set_fontsize(fts)
if contour:
if not fill:
raise Warning('Please run again with fill=True for overlay contour.')
else:
plt.contour(lons, zs, latslice, vc[::d], colors='k', linewidths=0.5, linestyles='solid', axes=ax)
if lonrange is not None:
plt.xlim(lonrange)
if hrange is not None:
plt.ylim(hrange)
if title is not None:
if map:
# move the title on the right
xmin, xmax = ax.get_xlim()
ymin, ymax = ax.get_ylim()
xt = xmin - (xmax-xmin)/9.
yt = ymax + (ymax-ymin)/7.
plt.text(xt, yt, title, fontsize=fts+4)
else:
plt.title(title, fontsize=fts+4)
plt.xlabel('Latitude', fontsize=fts)
plt.ylabel('Depth', fontsize=fts)
if map:
# draw a map with constant-i slice location
ax_map = plt.axes([0.4, 0.76, 0.2, 0.23])
varm = np.ma.masked_where(mask[:,:] == 0, var[var.shape[0]-1,:,:])
lon_min = lon.min()
lon_max = lon.max()
lon_0 = (lon_min + lon_max) / 2.
lat_min = lat.min()
lat_max = lat.max()
lat_0 = (lat_min + lat_max) / 2.
map = Basemap(projection='merc', llcrnrlon=lon_min, llcrnrlat=lat_min, \
urcrnrlon=lon_max, urcrnrlat=lat_max, lat_0=lat_0, lon_0=lon_0, \
resolution='i', area_thresh=10.)
x, y = list(map(lon,lat))
if lonrange is None:
xs, ys = list(map(lons[0,:],lats[0,:]))
else:
c1 = lats[0,:] >= lonrange[0]
c2 = lats[0,:] <= lonrange[1]
c = c1 & c2
idx = np.where(c == True)
xs, ys = list(map(lons[0,idx[0]],lats[0,idx[0]]))
# fill land and draw coastlines
map.drawcoastlines()
map.fillcontinents(color='grey')
#map.drawmapboundary()
Basemap.pcolor(map, x, y, varm, axes=ax_map)
Basemap.plot(map, xs, ys, 'k-', linewidth=3, axes=ax_map)
if outfile is not None:
if outfile.find('.png') != -1 or outfile.find('.svg') != -1 or outfile.find('.eps') != -1:
print('Write figure to file', outfile)
plt.savefig(outfile, dpi=200, facecolor='w', edgecolor='w', orientation='portrait')
else:
print('Unrecognized file extension. Please use .png, .svg or .eps file extension.')
return
rcParams['figure.figsize'] = (14,10)
llon=-140 # Columbia britanic
ulon=-50
llat=40
ulat=65
pdf = pdf[(pdf['Long'] > llon) & (pdf['Long'] < ulon) & (pdf['Lat'] > llat) &(pdf['Lat'] < ulat)]
my_map0 = Basemap(projection='merc',
resolution = 'l', area_thresh = 1000.0,
llcrnrlon=llon, llcrnrlat=llat, #min longitude (llcrnrlon) and latitude (llcrnrlat)
urcrnrlon=ulon, urcrnrlat=ulat) #max longitude (urcrnrlon) and latitude (urcrnrlat)
my_map0.drawcoastlines()
my_map0.drawcountries()
my_map0.fillcontinents(color = 'white', alpha = 0.3)
my_map0.shadedrelief()
# To collect data based on stations
xs,ys = my_map0(np.asarray(pdf.Long), np.asarray(pdf.Lat))
pdf['xm']= xs.tolist() # long
pdf['ym'] =ys.tolist() # lat
#Visualization1
#for index,row in pdf.iterrows():
#my_map0.plot(row.xm, row.ym,markerfacecolor =([1,0,0]), marker='o', markersize= 5, alpha = 0.75)
# Clustering group of stations which show the same location (lat and long)
# DBSCAN form sklearn library can runs DBSCAN clustering from vector array or distance matrix
# we pass it the Numpy array Clus_dataSet to find core samples of high density and expands clusters from this sample
args = parser.parse_args()
fig = plt.figure(figsize=(11.7, 8.3))
plt.subplots_adjust(left=0.05,
right=0.95,
top=0.90,
bottom=0.05,
wspace=0.15,
hspace=0.05)
ax = plt.subplot(111)
#if args.proj == 'default':
# m = Basemap(resolution='l')
#elif args.proj == 'npstere':
m = Basemap(projection='npstere', boundinglat=40, lon_0=60, resolution='l')
#else:
# print('unknown projection type')
m.drawmapboundary(fill_color='azure')
m.fillcontinents(color='palegoldenrod', lake_color='azure')
m.drawcoastlines()
m.drawparallels(np.arange(-90., 120., 30.), labels=[1, 0, 0, 0])
m.drawmeridians(np.arange(0., 420., 60.), labels=[0, 0, 0, 1])
if args.resolution == 0.:
grid_res = float(input("Grid resolution in km: "))
else:
grid_res = args.resolution
click = Click(ax, grid_gen)
#fig.canvas.mpl_connect("button_press_event", onclick)
plt.show()
np.arange(-3, 3.01, 0.25),
extend='both',
alpha=1,
zorder=1)
cs3 = m.contour(x,
y,
varsicmean,
np.arange(15, 30, 15),
alpha=1,
linewidths=2,
colors='gold',
zorder=3)
m.drawlsmask(land_color='dimgrey', ocean_color='k')
m.drawcoastlines(color='k', linewidth=0.1, zorder=6)
m.fillcontinents(color='dimgrey', lake_color='dimgrey', zorder=5)
parallels = np.arange(50, 86, 5)
meridians = np.arange(-180, 180, 30)
m.drawparallels(parallels,
labels=[False, False, False, False],
linewidth=0.0,
color='w')
par = m.drawmeridians(meridians,
labels=[True, True, False, False],
linewidth=0.0,
fontsize=4,
color='w')
setcolor(par, 'darkgrey')
### Set colormap
cmap2 = cmocean.cm.balance