def test_Allineate_outputs():
output_map = dict(matrix=dict(), out_file=dict())
outputs = Allineate.output_spec()
for key, metadata in output_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_Allineate_outputs():
output_map = dict(matrix=dict(),
out_file=dict(),
)
outputs = Allineate.output_spec()
for key, metadata in output_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_Allineate_inputs():
input_map = dict(
args=dict(argstr="%s"),
autobox=dict(argstr="-autobox"),
automask=dict(argstr="-automask+%d"),
autoweight=dict(argstr="-autoweight%s"),
center_of_mass=dict(argstr="-cmass%s"),
check=dict(argstr="-check %s"),
convergence=dict(argstr="-conv %f"),
cost=dict(argstr="-cost %s"),
environ=dict(nohash=True, usedefault=True),
epi=dict(argstr="-EPI"),
final_interpolation=dict(argstr="-final %s"),
fine_blur=dict(argstr="-fineblur %f"),
ignore_exception=dict(nohash=True, usedefault=True),
in_file=dict(argstr="-source %s", copyfile=False, mandatory=True, position=-1),
in_matrix=dict(argstr="-1Dmatrix_apply %s", position=-3),
in_param_file=dict(argstr="-1Dparam_apply %s"),
interpolation=dict(argstr="-interp %s"),
master=dict(argstr="-master %s"),
newgrid=dict(argstr="-newgrid %f"),
nmatch=dict(argstr="-nmatch %d"),
no_pad=dict(argstr="-nopad"),
nomask=dict(argstr="-nomask"),
nwarp=dict(argstr="-nwarp %s"),
nwarp_fixdep=dict(argstr="-nwarp_fixdep%s"),
nwarp_fixmot=dict(argstr="-nwarp_fixmot%s"),
one_pass=dict(argstr="-onepass"),
out_file=dict(argstr="-prefix %s", genfile=True, name_source="%s_allineate", position=-2),
out_matrix=dict(argstr="-1Dmatrix_save %s"),
out_param_file=dict(argstr="-1Dparam_save %s"),
out_weight_file=dict(argstr="-wtprefix %s"),
outputtype=dict(),
reference=dict(argstr="-base %s"),
replacebase=dict(argstr="-replacebase"),
replacemeth=dict(argstr="-replacemeth %s"),
source_automask=dict(argstr="-source_automask+%d"),
source_mask=dict(argstr="-source_mask %s"),
terminal_output=dict(nohash=True),
two_best=dict(argstr="-twobest %d"),
two_blur=dict(argstr="-twoblur"),
two_first=dict(argstr="-twofirst"),
two_pass=dict(argstr="-twopass"),
usetemp=dict(argstr="-usetemp"),
warp_type=dict(argstr="-warp %s"),
warpfreeze=dict(argstr="-warpfreeze"),
weight_file=dict(argstr="-weight %s"),
zclip=dict(argstr="-zclip"),
)
inputs = Allineate.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value
def test_Allineate_inputs():
input_map = dict(args=dict(argstr='%s',
),
autobox=dict(argstr='-autobox',
),
automask=dict(argstr='-automask+%d',
),
autoweight=dict(argstr='-autoweight%s',
),
center_of_mass=dict(argstr='-cmass%s',
),
check=dict(argstr='-check %s',
),
convergence=dict(argstr='-conv %f',
),
cost=dict(argstr='-cost %s',
),
environ=dict(nohash=True,
usedefault=True,
),
epi=dict(argstr='-EPI',
),
final_interpolation=dict(argstr='-final %s',
),
fine_blur=dict(argstr='-fineblur %f',
),
ignore_exception=dict(nohash=True,
usedefault=True,
),
in_file=dict(argstr='-source %s',
copyfile=False,
mandatory=True,
position=-1,
),
in_matrix=dict(argstr='-1Dmatrix_apply %s',
position=-3,
),
in_param_file=dict(argstr='-1Dparam_apply %s',
),
interpolation=dict(argstr='-interp %s',
),
master=dict(argstr='-master %s',
),
newgrid=dict(argstr='-newgrid %f',
),
nmatch=dict(argstr='-nmatch %d',
),
no_pad=dict(argstr='-nopad',
),
nomask=dict(argstr='-nomask',
),
nwarp=dict(argstr='-nwarp %s',
),
nwarp_fixdep=dict(argstr='-nwarp_fixdep%s',
),
nwarp_fixmot=dict(argstr='-nwarp_fixmot%s',
),
one_pass=dict(argstr='-onepass',
),
out_file=dict(argstr='-prefix %s',
genfile=True,
name_source='%s_allineate',
position=-2,
),
out_matrix=dict(argstr='-1Dmatrix_save %s',
),
out_param_file=dict(argstr='-1Dparam_save %s',
),
out_weight_file=dict(argstr='-wtprefix %s',
),
outputtype=dict(),
reference=dict(argstr='-base %s',
),
replacebase=dict(argstr='-replacebase',
),
replacemeth=dict(argstr='-replacemeth %s',
),
source_automask=dict(argstr='-source_automask+%d',
),
source_mask=dict(argstr='-source_mask %s',
),
terminal_output=dict(nohash=True,
),
two_best=dict(argstr='-twobest %d',
),
two_blur=dict(argstr='-twoblur',
),
two_first=dict(argstr='-twofirst',
),
two_pass=dict(argstr='-twopass',
),
usetemp=dict(argstr='-usetemp',
),
warp_type=dict(argstr='-warp %s',
),
warpfreeze=dict(argstr='-warpfreeze',
),
weight_file=dict(argstr='-weight %s',
),
zclip=dict(argstr='-zclip',
),
)
inputs = Allineate.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value