def __init__(self, nodeid, seqtype, alg_fasta_file, alg_phylip_file, conf, confname): GLOBALS["citator"].add(TRIMAL_CITE) self.confname = confname self.conf = conf self.seqtype = seqtype self.alg_fasta_file = alg_fasta_file self.alg_phylip_file = alg_phylip_file base_args = { '-in': None, '-out': None, '-fasta': "", '-colnumbering': "", } # Initialize task AlgCleanerTask.__init__(self, nodeid, "acleaner", "Trimal", base_args, self.conf[confname]) self.init()