def __init__(self, nodeid, seqtype, alg_fasta_file, alg_phylip_file,
conf, confname):
GLOBALS["citator"].add(TRIMAL_CITE)
self.confname = confname
self.conf = conf
self.seqtype = seqtype
self.alg_fasta_file = alg_fasta_file
self.alg_phylip_file = alg_phylip_file
base_args = {
'-in': None,
'-out': None,
'-fasta': "",
'-colnumbering': "",
}
# Initialize task
AlgCleanerTask.__init__(self, nodeid, "acleaner", "Trimal",
base_args,
self.conf[confname])
self.init()
