def setUpClass(cls): # self._setupdb() logging.basicConfig(level=logging.DEBUG, format="%(funcName)s - %(lineno)d - %(message)s") metadata.bind = 'sqlite:///:memory:' create_all() from parsers import rosenberg_parser rosenberg_parser(open(cls.testfile, 'r')) logging.debug('DB (rosenberg test) has been set')
def setUpClass(cls): # self._setupdb() logging.basicConfig(level=logging.DEBUG, format="%(funcName)s - %(lineno)d - %(message)s") metadata.bind = 'sqlite:///:memory:' create_all() from parsers import genotypes_parser, rosenberg_parser # populate with some individuals rosenberg_parser(open(cls.individualsfile, 'r')) genotypes_parser(open(cls.testfile, 'r')) logging.debug('DB (genotype test) has been set')