def setUpClass(cls):
# self._setupdb()
logging.basicConfig(level=logging.DEBUG, format="%(funcName)s - %(lineno)d - %(message)s")
metadata.bind = 'sqlite:///:memory:'
create_all()
from parsers import rosenberg_parser
rosenberg_parser(open(cls.testfile, 'r'))
logging.debug('DB (rosenberg test) has been set')
def setUpClass(cls):
# self._setupdb()
logging.basicConfig(level=logging.DEBUG, format="%(funcName)s - %(lineno)d - %(message)s")
metadata.bind = 'sqlite:///:memory:'
create_all()
from parsers import genotypes_parser, rosenberg_parser
# populate with some individuals
rosenberg_parser(open(cls.individualsfile, 'r'))
genotypes_parser(open(cls.testfile, 'r'))
logging.debug('DB (genotype test) has been set')
