def test_dosLineEndingsFasta(self):
fr = FastaReader(data.getDosFormattedFasta())
frEntries = list(fr)
ft = IndexedFastaReader(data.getDosFormattedFasta())
ftEntries = list(ft)
assert_equal(len(frEntries), len(ftEntries))
for (frE, ftE) in zip(frEntries, ftEntries):
assert_equal(frE.header, ftE.header)
assert_equal(frE.sequence, ftE.sequence[:])
def test_dosLineEndingsFasta(self):
fr = FastaReader(data.getDosFormattedFasta())
frEntries = list(fr)
ft = IndexedFastaReader(data.getDosFormattedFasta())
ftEntries = list(ft)
assert len(frEntries) == len(ftEntries)
for (frE, ftE) in zip(frEntries, ftEntries):
assert frE.header == ftE.header
assert frE.sequence == ftE.sequence[:]
def test_dosLineEndingsFasta(self):
f = FastaReader(data.getDosFormattedFasta())
entries = list(f)
for e in entries:
assert_true("\r" not in e.header)
assert_equal(16, len(e.sequence))
def test_dosLineEndingsFasta(self):
f = FastaReader(data.getDosFormattedFasta())
entries = list(f)
for e in entries:
assert_true("\r" not in e.name)
assert_equal(16, len(e.sequence))
def test_dosLineEndingsFasta(self):
f = FastaReader(data.getDosFormattedFasta())
entries = list(f)
for e in entries:
assert "\r" not in e.header
assert 16 == len(e.sequence)