def _pcolormesh(radar, field, sweep=0, cmap=None, norm=None, fig=None, ax=None):
"""
"""
# Parse figure and axis
if fig is None:
fig = plt.gcf()
if ax is None:
ax = plt.gca()
# Parse radar coordinates
# Convert angles to radians and range to kilometers
_range = radar.range["data"] / 1000.0
azimuth = np.radians(radar.get_azimuth(sweep))
# Compute radar sweep coordinates
AZI, RNG = np.meshgrid(azimuth, _range, indexing="ij")
X = RNG * np.sin(AZI)
Y = RNG * np.cos(AZI)
# Parse radar data
data = radar.get_field(sweep, field)
# Create quadmesh
qm = ax.pcolormesh(X, Y, data, cmap=cmap, norm=norm, shading="flat", alpha=None, rasterized=True)
# Create title
s0, sf = radar.get_start_end(sweep)
sweep_time = datetimes_from_radar(radar)[(s0 + sf) / 2]
title = "{} {:.1f} deg\n{}Z\n{}".format(
radar.metadata["instrument_name"], radar.fixed_angle["data"][sweep], sweep_time.isoformat(), field
)
ax.set_title(title)
return qm
def _parse_datastreams(radar, filename, version='-9999'):
"""
"""
time = os.path.basename(filename).split('.')[0]
date = datetimes_from_radar(radar).min().date().strftime('%Y%m%d')
datastream = 'sgpcsaprsur{}.00 : {} : {}.{}'.format(
FN, version, date, time)
return datastream
def _pcolormesh(
radar, field, sweep=0, cmap=None, norm=None, fig=None, ax=None):
"""
"""
# Parse axis and figure parameters
if fig is None:
fig = plt.gcf()
if ax is None:
ax = plt.gca()
# Parse radar coordinates
# Convert angles to radians and range to kilometers
_range = radar.range['data'] / 1000.0
azimuth = np.radians(radar.get_azimuth(sweep))
# Compute index of maximum range
rf = np.abs(_range - MAX_RANGE).argmin()
# Compute radar sweep coordinates
AZI, RNG = np.meshgrid(azimuth, _range[:rf+1], indexing='ij')
X = RNG * np.sin(AZI)
Y = RNG * np.cos(AZI)
# Parse radar data
data = radar.get_field(sweep, field)[:,:rf+1]
# Create quadmesh
qm = ax.pcolormesh(
X, Y, data, cmap=cmap, norm=norm, shading='flat', alpha=None,
rasterized=True)
# Create title
s0, sf = radar.get_start_end(sweep)
sweep_time = datetimes_from_radar(radar)[(s0 + sf) / 2]
title = '{} {:.1f} deg\n{}Z\n{}'.format(
radar.metadata['instrument_name'],
radar.fixed_angle['data'][sweep],
sweep_time.isoformat(), field)
ax.set_title(title)
return qm
def process_radar(radar, domain, weight, outdir, gatefilter=None, debug=False,
verbose=False):
"""
"""
if verbose:
print('Processing file: {}'.format(os.path.basename(filename)))
# Read radar data
radar = read(filename, exclude_fields=EXCLUDE_FIELDS)
# Create gatefilter from significant detection
gf = GateFilter(radar)
gf.exclude_below(SD_FIELD, 1, op='or', inclusive=False)
if debug:
print('Number of sweeps: {}'.format(radar.nsweeps))
# Grid radar data
grid = grid_radar(
radar, domain, weight=weight, fields=FIELDS, gatefilter=gf, toa=TOA,
max_range=MAX_RANGE, gqi_field=None, legacy=True, debug=debug,
verbose=verbose)
# Add new metadata
_add_metadata(grid, filename)
# ARM file name protocols
date_stamp = datetimes_from_radar(radar).min().strftime('%Y%m%d.%H%M%S')
fname = 'nexradwsr88d{}{}.{}.{}.cdf'.format(QF, FN, DL, date_stamp)
# Write MMCG NetCDF file
grid_io.write_grid(
os.path.join(outdir, fname), grid, format=FORMAT,
write_proj_coord_sys=False, proj_coord_sys=None,
arm_time_variables=True, write_point_x_y_z=False,
write_point_lon_lat_alt=False)
return
def multipanel(radar, outdir, dpi=90, debug=False, verbose=False):
"""
"""
# Create figure instance
subs = {'xlim': (-100, 100), 'ylim': (-100, 100)}
fig, axes = plt.subplots(nrows=len(SWEEPS), ncols=9, subplot_kw=subs)
fig.subplots_adjust(wspace=0.4, hspace=0.6)
if debug:
print 'Number of sweeps: {}'.format(radar.nsweeps)
# Loop over specified sweeps
for i, sweep in enumerate(SWEEPS):
if verbose:
print 'Plotting sweep index: {}'.format(sweep)
# (a) Reflectivity
qma = _pcolormesh(
radar, REFL_FIELD, sweep=sweep, cmap=CMAP_REFL, norm=NORM_REFL,
fig=fig, ax=axes[i,0])
# (b) Doppler velocity
qmb = _pcolormesh(
radar, VDOP_FIELD, sweep=sweep, cmap=CMAP_VDOP, norm=NORM_VDOP,
fig=fig, ax=axes[i,1])
# (c) Corrected Doppler velocity
qmc = _pcolormesh(
radar, VDOP_CORR_FIELD, sweep=sweep, cmap=CMAP_VDOP,
norm=NORM_VDOP, fig=fig, ax=axes[i,2])
# (d) Spectrum width
qmd = _pcolormesh(
radar, SPW_FIELD, sweep=sweep, cmap=CMAP_SPW, norm=NORM_SPW,
fig=fig, ax=axes[i,3])
# (e) Copolar correlation coefficient
qme = _pcolormesh(
radar, RHOHV_FIELD, sweep=sweep, cmap=CMAP_RHOHV, norm=NORM_RHOHV,
fig=fig, ax=axes[i,4])
# (f) Differential reflectivity
qmf = _pcolormesh(
radar, ZDR_FIELD, sweep=sweep, cmap=CMAP_ZDR, norm=NORM_ZDR,
fig=fig, ax=axes[i,5])
# (g) Differential phase
qmg = _pcolormesh(
radar, PHIDP_FIELD, sweep=sweep, cmap=CMAP_PHIDP, norm=NORM_PHIDP,
fig=fig, ax=axes[i,6])
# (h) Normalized coherent power
qmh = _pcolormesh(
radar, NCP_FIELD, sweep=sweep, cmap=CMAP_NCP, norm=NORM_NCP,
fig=fig, ax=axes[i,7])
# (i) Radar significant detection
qmi = _pcolormesh(
radar, SD_FIELD, sweep=sweep, cmap=CMAP_NCP, norm=NORM_NCP,
fig=fig, ax=axes[i,8])
# Create colour bars
qm = [qma, qmb, qmc, qmd, qme, qmf, qmg, qmh, qmi]
_create_colorbars(fig, axes, qm, TICKS)
# Format plot axes
for ax in axes.flat:
ax.xaxis.set_major_locator(MultipleLocator(20))
ax.xaxis.set_minor_locator(MultipleLocator(10))
ax.yaxis.set_major_locator(MultipleLocator(20))
ax.yaxis.set_minor_locator(MultipleLocator(10))
ax.set_xlabel('Eastward Range (km)')
ax.set_ylabel('Northward Range (km)')
ax.grid(which='major')
# Define image file name
date_stamp = datetimes_from_radar(radar).min().strftime('%Y%m%d.%H%M%S')
filename = '{}.png'.format(date_stamp)
# Save figure
fig.savefig(os.path.join(outdir, filename), format='png', dpi=dpi,
bbox_inches='tight')
# Close figure and axes to free memory
plt.cla()
plt.clf()
plt.close(fig)
return
def multipanel(radar, outdir, dpi=90, debug=False, verbose=False):
"""
"""
# Create figure instance
subs = {'xlim': (-100, 100), 'ylim': (-100, 100)}
fig, axes = plt.subplots(nrows=len(SWEEPS), ncols=3, subplot_kw=subs)
fig.subplots_adjust(wspace=0.6, hspace=0.6)
if debug:
print('Number of sweeps: {}'.format(radar.nsweeps))
# Loop over specified sweeps
for i, sweep in enumerate(SWEEPS):
if verbose:
print('Plotting sweep index: {}'.format(sweep))
# (a) Reflectivity
qma = _pcolormesh(
radar, REFL_FIELD, sweep=sweep, cmap=CMAP_REFL, norm=NORM_REFL,
fig=fig, ax=axes[i,0])
# (b) Doppler velocity
qmb = _pcolormesh(
radar, VDOP_FIELD, sweep=sweep+1, cmap=CMAP_VDOP, norm=NORM_VDOP,
fig=fig, ax=axes[i,1])
# (c) Spectrum width
qmc = _pcolormesh(
radar, SPW_FIELD, sweep=sweep+1, cmap=CMAP_SPW, norm=NORM_SPW,
fig=fig, ax=axes[i,2])
# Create color bars
qm = [qma, qmb, qmc]
_create_colorbars(fig, axes, qm, TICKS)
# Format plot axes
for ax in axes.flat:
ax.xaxis.set_major_locator(MultipleLocator(50))
ax.xaxis.set_minor_locator(MultipleLocator(10))
ax.yaxis.set_major_locator(MultipleLocator(50))
ax.yaxis.set_minor_locator(MultipleLocator(10))
ax.set_xlabel('Eastward Range (km)')
ax.set_ylabel('Northward Range (km)')
ax.grid(which='major')
# Define image file name
date_stamp = datetimes_from_radar(radar).min().strftime('%Y%m%d.%H%M%S')
fname = '{}.png'.format(date_stamp)
# Save figure
fig.savefig(os.path.join(outdir, fname), format='png', dpi=dpi,
bbox_inches='tight', frameon=True, transparent=False)
# Close figure to free memory
plt.cla()
plt.clf()
plt.close(fig)
return
def multipanel(radar, outdir, dpi=90, debug=False, verbose=False):
"""
"""
# Create figure instance
subs = {"xlim": (-117, 117), "ylim": (-117, 117)}
fig, axes = plt.subplots(nrows=len(SWEEPS), ncols=7, subplot_kw=subs)
fig.subplots_adjust(wspace=0.5, hspace=0.6)
if debug:
print("Number of sweeps: {}".format(radar.nsweeps))
# Loop over specified sweeps
for i, sweep in enumerate(SWEEPS):
if verbose:
print("Plotting sweep index: {}".format(sweep))
# (a) Reflectivity
qma = _pcolormesh(radar, REFL_FIELD, sweep=sweep, cmap=CMAP_REFL, norm=NORM_REFL, fig=fig, ax=axes[i, 0])
# (b) Doppler velocity
qmb = _pcolormesh(radar, VDOP_FIELD, sweep=sweep, cmap=CMAP_VDOP, norm=NORM_VDOP, fig=fig, ax=axes[i, 1])
# (c) Spectrum width
qmc = _pcolormesh(radar, SPW_FIELD, sweep=sweep, cmap=CMAP_SPW, norm=NORM_SPW, fig=fig, ax=axes[i, 2])
# (d) Copolar correlation coefficient
qmd = _pcolormesh(radar, RHOHV_FIELD, sweep=sweep, cmap=CMAP_RHOHV, norm=NORM_RHOHV, fig=fig, ax=axes[i, 3])
# (e) Differential reflectivity
qme = _pcolormesh(radar, ZDR_FIELD, sweep=sweep, cmap=CMAP_ZDR, norm=NORM_ZDR, fig=fig, ax=axes[i, 4])
# (f) Differential phase
qmf = _pcolormesh(radar, PHIDP_FIELD, sweep=sweep, cmap=CMAP_PHIDP, norm=NORM_PHIDP, fig=fig, ax=axes[i, 5])
# (g) Normalized coherent power
qmg = _pcolormesh(radar, NCP_FIELD, sweep=sweep, cmap=CMAP_NCP, norm=NORM_NCP, fig=fig, ax=axes[i, 6])
# Create color bars
qm = [qma, qmb, qmc, qmd, qme, qmf, qmg]
_create_colorbars(fig, axes, qm, TICKS)
# Format plot axes
for ax in axes.flat:
ax.xaxis.set_major_locator(MultipleLocator(50))
ax.xaxis.set_minor_locator(MultipleLocator(10))
ax.yaxis.set_major_locator(MultipleLocator(50))
ax.yaxis.set_minor_locator(MultipleLocator(10))
ax.set_xlabel("Eastward Range (km)")
ax.set_ylabel("Northward Range (km)")
ax.grid(which="major")
# Define image file name
date_stamp = datetimes_from_radar(radar).min().strftime("%Y%m%d.%H%M%S")
fname = "{}.png".format(date_stamp)
# Save figure
fig.savefig(os.path.join(outdir, fname), format="png", dpi=dpi, bbox_inches="tight")
# Close figure to free memory
plt.cla()
plt.clf()
plt.close(fig)
return
def process_file(filename, outdir, debug=False, verbose=False):
"""
"""
# Read radar data
if USE_RADX:
radar = read_radx(filename)
else:
radar = read(filename, exclude_fields=None)
# Radar VCP check
if CHECK_VCP:
if NSWEEPS is not None and radar.nsweeps != NSWEEPS:
return
if verbose:
print 'Processing file: {}'.format(os.path.basename(filename))
if debug:
print 'Number of sweeps: {}'.format(radar.nsweeps)
if USE_RADX:
# Create file metadata object
meta = FileMetadata(
'nexrad_archive', field_names=None, additional_metadata=None,
file_field_names=False, exclude_fields=None)
# Remove unnecessary fields
for field in REMOVE_FIELDS:
radar.fields.pop(field, None)
# Rename fields to default Py-ART names
for field in radar.fields.keys():
default_field = meta.get_field_name(field)
radar.fields[default_field] = radar.fields.pop(field, None)
# Step 1: Determine radar significant detection
# Since NEXRAD WSR-88D Level II data is already processed to some degree,
# this amounts to essentially removing salt and pepper noise
gf = noise._significant_features(
radar, REFL_FIELD, gatefilter=None, size_bins=SIZE_BINS,
size_limits=SIZE_LIMITS, structure=STRUCTURE, remove_size_field=False,
fill_value=None, size_field=None, debug=debug)
gf = noise.significant_detection(
radar, gatefilter=gf, remove_small_features=False, size_bins=SIZE_BINS,
size_limits=SIZE_LIMITS, fill_holes=FILL_HOLES, dilate=DILATE,
structure=STRUCTURE, iterations=1, rays_wrap_around=False,
min_ncp=None, detect_field=None, debug=debug, verbose=verbose)
# Step 2: Doppler velocity correction
if DEALIAS == 'phase':
vdop_corr = dealias_unwrap_phase(
radar, gatefilter=gf, unwrap_unit='sweep', nyquist_vel=None,
rays_wrap_around=True, keep_original=False, vel_field=None,
corr_vel_field=VDOP_CORR_FIELD)
elif DEALIAS == 'region':
vdop_corr = dealias_region_based(
radar, gatefilter=gf, interval_splits=INTERVAL_SPLITS,
interval_limits=None, skip_between_rays=2, skip_along_ray=2,
centered=True, nyquist_vel=None, rays_wrap_around=True,
keep_original=False, vel_field=None,
corr_vel_field=VDOP_CORR_FIELD)
else:
raise ValueError('Unsupported velocity correction routine')
radar.add_field(VDOP_CORR_FIELD, vdop_corr, replace_existing=True)
# Step 3: Reflectivity correction
# Currently no correction procedures are applied to the reflectivity field
# due to minimal attenuation at S-band
refl_corr = radar.fields[REFL_FIELD].copy()
radar.add_field(REFL_CORR_FIELD, refl_corr, replace_existing=True)
# Step 4: Interpolate missing gates
basic_fixes.interpolate_missing(
radar, fields=FILL_FIELDS, interp_window=FILL_WINDOW,
interp_sample=FILL_SAMPLE, kind='mean', rays_wrap_around=False,
fill_value=None, debug=debug, verbose=verbose)
# Add metadata
_add_metadata(radar, filename)
# ARM file name protocols
date_stamp = datetimes_from_radar(radar).min().strftime('%Y%m%d.%H%M%S')
fname = 'nexradwsr88d{}cmac{}.{}.{}.cdf'.format(QF, FN, DL, date_stamp)
# Write CMAC NetCDF file
write_cfradial(os.path.join(outdir, fname), radar, format=FORMAT,
arm_time_variables=True)
return
def process_file(filename, outdir, debug=False, verbose=False):
"""
"""
if verbose:
print 'Processing file: {}'.format(os.path.basename(filename))
# Read radar data
radar = read_mdv(filename, exclude_fields=EXLUDE_FIELDS)
if debug:
print 'Number of sweeps: {}'.format(radar.nsweeps)
# Step 1: Remove last 7 gates from each ray
# These gates are reserved for signal testing only
for field in radar.fields.keys():
if verbose:
print 'Removing signal testing gates: {}'.format(field)
radar.fields[field]['data'][:,-7:] = np.ma.masked
# Step 2: Radar significant detection
# Includes Doppler velocity coherency, Doppler velocity phasor coherency,
# and significant echo boundary detection
gf = noise.velocity_coherency(
radar, gatefilter=None, text_bins=VDOP_TEXT_BINS,
text_limits=VDOP_TEXT_LIMITS, texture_window=TEXTURE_WINDOW,
texture_sample=TEXTURE_SAMPLE, max_texture=None, nyquist=None,
rays_wrap_around=False, remove_small_features=False, fill_value=None,
vdop_field=VDOP_FIELD, text_field=None, coherent_field=None,
debug=debug, verbose=verbose)
gf = noise.velocity_phasor_coherency(
radar, gatefilter=gf, text_bins=PHASOR_TEXT_BINS,
text_limits=PHASOR_TEXT_LIMITS, texture_window=TEXTURE_WINDOW,
texture_sample=TEXTURE_SAMPLE, max_texture=None,
rays_wrap_around=False, remove_small_features=False, fill_value=None,
vdop_field=VDOP_FIELD, phasor_field=None, text_field=None,
coherent_field=None, debug=debug, verbose=verbose)
gf = noise.echo_boundaries(
radar, gatefilter=gf, texture_window=TEXTURE_WINDOW,
texture_sample=TEXTURE_SAMPLE, min_texture=None,
bounds_percentile=BOUNDS_PERCENTILE, remove_small_features=False,
rays_wrap_around=False, fill_value=None, sqi_field=NCP_FIELD,
text_field=None, bounds_field=None, debug=debug, verbose=verbose)
gf = noise.significant_detection(
radar, gatefilter=gf, remove_small_features=True, size_bins=SIZE_BINS,
size_limits=SIZE_LIMITS, fill_holes=FILL_HOLES, dilate=DILATE,
structure=STRUCTURE, iterations=ITERATIONS, min_ncp=MIN_NCP,
ncp_field=NCP_FIELD, detect_field=None, debug=debug, verbose=verbose)
# Step 3: Compute radar texture fields
texture_fields.add_textures(
radar, fields=TEXTURE_FIELDS, gatefilter=None,
texture_window=TEXTURE_WINDOW, texture_sample=TEXTURE_SAMPLE,
min_sweep=None, max_sweep=None, min_range=None, max_range=None,
min_ncp=None, rays_wrap_around=False, fill_value=None,
ncp_field=NCP_FIELD)
# Step 4: Doppler velocity correction
if DEALIAS.upper() == 'REGION':
vdop_corr = dealias_region_based(
radar, gatefilter=gf, interval_splits=INTERVAL_SPLITS,
interval_limits=None, skip_between_rays=2, skip_along_ray=2,
centered=True, nyquist_vel=None, rays_wrap_around=True,
keep_original=False, vel_field=VDOP_FIELD,
corr_vel_field=CORR_VDOP_FIELD)
else:
raise ValueError('Unsupported velocity correction routine')
radar.add_field(CORR_VDOP_FIELD, vdop_corr, replace_existing=False)
# TODO
# Step 5: Reflectivity correction
refl_corr = radar.fields[REFL_FIELD].copy()
radar.add_field(CORR_REFL_FIELD, refl_corr, replace_existing=False)
# Step 6: Interpolate missing gates
basic_fixes.interpolate_missing(
radar, fields=FILL_FIELDS, interp_window=FILL_WINDOW,
interp_sample=FILL_SAMPLE, kind='mean', rays_wrap_around=False,
fill_value=None, debug=debug, verbose=verbose)
# Step 7: Remove unwanted fields before writing
for field in REMOVE_FIELDS:
if verbose:
print 'Removing radar field before writing: {}'.format(field)
radar.fields.pop(field, None)
# Parse metadata
_add_metadata(radar, filename)
# ARM file name protocols
date = datetimes_from_radar(radar).min().strftime('%Y%m%d.%H%M%S')
fname = 'sgpcsaprsurcmac{}.{}.{}.cdf'.format(FN, DL, date)
# Write CMAC NetCDF file
write_cfradial(os.path.join(outdir, fname), radar, format=FORMAT,
arm_time_variables=True)
return
