def calcNTrueForDir(dataDir):
"""
This function calculates the value of the total nTrue and the nTrue values for each wave for a single mass bin directory.
Args:
dataDir (string): The complete file path to the "mass_MeV" directory.
"""
#list to hold nTrue errors
errorList=[]
errorListEx=[]
wvNameList=[]
#getting our waves
waves=getwaves(os.path.join(dataDir,"data"))
#loading our accepted normalization integral (NOTE: its from the mc directory)
accNormInt=numpy.load(os.path.join(dataDir,"mc","acc","normint.npy"))
rawNormInt=numpy.load(os.path.join(dataDir,"mc","raw","normint.npy"))
apath = os.path.join(dataDir,"mc","acc","alphaevents.txt")
rpath = os.path.join(dataDir,"mc","raw","alphaevents.txt")
#apath = os.path.join(dataDir,"mc","acc","events.num")
#rpath = os.path.join(dataDir,"mc","raw","events.num")
#instantiating our list of complex production amplitudes, should be
##a list of 2 numpy complexes
contents=numpy.load(os.path.join(dataDir,"Vvalues.npy"))
orderedContents=sorted(contents.tolist().iteritems(),key=operator.itemgetter(0))
vList=[]
for i in range(0,len(orderedContents),2):
realPart=orderedContents[i][1]
imaginaryPart=orderedContents[i+1][1]
vList.append(numpy.complex(realPart,imaginaryPart))
#calculating nTrue for both waves combined
ntrueVal=ntrue(vList,waves,rawNormInt)
nExpVal=nExp(vList,waves,accNormInt,apath,rpath)
nTrueList=[]
nExpList=[]
#then storing it
nTrueList.append(ntrueVal)
nExpList.append(nExpVal)
#next calculating nTrue for each wave
for wave in waves:
nTrueList.append(ntrueforwave(vList[waves.index(wave)],waves,wave,rawNormInt).real)
nExpList.append(nExpforwave(vList[waves.index(wave)],waves,wave,accNormInt,apath,rpath).real)
wvNameList.append(wave.filename)
#next up lets load our raw normalization integral
#loading our minuit covariance matrix obtained from fitting
if os.path.isfile(os.path.join(dataDir,"minuitCovar3.npy")):
covarianceMatrix=numpy.load(os.path.join(dataDir,"minuitCovar3.npy"))
statSquared=calcStatSquaredError(covarianceMatrix,rawNormInt,vList,waves)
statSquaredEx=calcStatSquaredError(covarianceMatrix,accNormInt,vList,waves)
print statSquared
print statSquaredEx
errorList.append(numpy.sqrt(statSquared[0,0].real))
errorListEx.append(numpy.sqrt(statSquaredEx[0,0].real))
if not os.path.isfile(os.path.join(dataDir,"minuitCovar3.npy")):
statSquared=0
errorList.append(0)
statSquaredEx=0
errorListEx.append(0)
for wave in waves:
if statSquared != 0:
buffer=numpy.zeros(shape=rawNormInt.shape)
i=waves.index(wave)
buffer[wave.epsilon,wave.epsilon,i,:]=rawNormInt[wave.epsilon,wave.epsilon,i,:]
statSquared=calcStatSquaredError(covarianceMatrix,buffer,vList,waves)
errorList.append(numpy.sqrt(statSquared[0,0].real))
buffer=numpy.zeros(shape=accNormInt.shape)
i=waves.index(wave)
buffer[wave.epsilon,wave.epsilon,i,:]=accNormInt[wave.epsilon,wave.epsilon,i,:]
statSquared=calcStatSquaredError(covarianceMatrix,buffer,vList,waves)
errorListEx.append(numpy.sqrt(statSquared[0,0].real))
else:
errorList.append(0)
errorListEx.append(0)
#saving our results to be used in plotting later. format is numpy array [[nTrueTotal,nTrueWave1,nTrueWave2],[errorNTrueTotal,errorNTrueWave1,errorNTrueWave2]]
#numpy.save(os.path.join(dataDir,"nTrueError.npy"),numpy.array([nTrueList,errorList]))
retList=[]
for i in range(len(nTrueList)):
if i == 0:
retList.append([dataDir.strip("_MeV"),nTrueList[i],errorList[i],nExpList[i],errorListEx[i]])
elif i > 0:
retList.append([dataDir.strip("_MeV"),nTrueList[i],errorList[i],wvNameList[i-1],nExpList[i],errorListEx[i]])
return retList
waves=getwaves(os.path.join(dataDir,"flat"))
normint=numpy.load(os.path.join(dataDir,"flat","normint.npy"))
if os.path.isfile(os.path.join(dataDir,"Vvalues.npy")):
contents=numpy.load(os.path.join(dataDir,"Vvalues.npy"))
orderedContents=sorted(contents.tolist().iteritems(),key=operator.itemgetter(0))
for i in range(0,len(orderedContents),2):
realPart=orderedContents[i][1]
imaginaryPart=orderedContents[i+1][1]
productionAmplitudes.append(numpy.complex(realPart,imaginaryPart))
if sys.argv[3] == "s":
nTrueList = [ntrue(productionAmplitudes,waves,normint)]
for wave in waves:
nTrueList.append(wave.filename.rstrip(".bamp"))
nTrueList.append(ntrueforwave(productionAmplitudes[waves.index(wave)],waves,wave,normint).real)
numpy.save(os.path.join(dataDir,"flat","nTrueListV.npy"),nTrueList)
elif os.path.isfile(os.path.join(topDir,"scripts","resonances.txt")):
resonances=[]
res = open(os.path.join(topDir,"scripts","resonances.txt"))
rez = res.readlines()
for re in rez:
if re[0] != "#" and re[0] != " " and re[0] != "\n":
rev = re.split()
wRx = [(float(x)) for x in rev[1].split(",")]
resonances.append(resonance(cR=float(rev[0])*maxNumberOfEvents,wR=wRx,w0=float(rev[2]),r0=float(rev[3]),phase=float(rev[4])))
if sys.argv[3] == "s":
nTrueList = [ntrue(resonances,waves,testMass,normint)]
for wave in waves:
nTrueList.append(wave.filename.rstrip(".bamp"))
nTrueList.append(ntrueforwave(resonances,waves,wave,testMass,normint))