def openFile(fullpath):
r = csv.reader(open(fullpath))
header = r.next()
dataFrame = qMS.readIsoCSV(fullpath, noProcess=False)
puls = 'AMP_L' in dataFrame.columns
vla = 'FRC_NX' in dataFrame.columns
return [dataFrame, puls, vla]
def readSingleIsoCSV(path, shortName=None):
dataset = qMS.readIsoCSV(path)
if shortName is None:
shortName = path
dataset['shortName'] = shortName
s = '_'
dataset['UID'] = dataset['originFile'] +s+ dataset['protein'] +s+ dataset['startres'].map(str).str.split('.').str[0] +s+\
dataset['endres'].map(str).str.split('.').str[0] +s+ dataset['mw'].map(str).str.split('.').str[0] +s+ \
dataset['charge'].map(str).str.split('.').str[0] +s+ dataset['rt_n14'].map(str).str.split('.').str[0]
dataset['TID'] = dataset['protein'] +s+ dataset['startres'].map(str).str.split('.').str[0] +s+\
dataset['endres'].map(str).str.split('.').str[0] +s+ dataset['mw'].map(str).str.split('.').str[0] +s+ \
dataset['charge'].map(str).str.split('.').str[0]
return dataset
