def openFile(fullpath): r = csv.reader(open(fullpath)) header = r.next() dataFrame = qMS.readIsoCSV(fullpath, noProcess=False) puls = 'AMP_L' in dataFrame.columns vla = 'FRC_NX' in dataFrame.columns return [dataFrame, puls, vla]
def readSingleIsoCSV(path, shortName=None): dataset = qMS.readIsoCSV(path) if shortName is None: shortName = path dataset['shortName'] = shortName s = '_' dataset['UID'] = dataset['originFile'] +s+ dataset['protein'] +s+ dataset['startres'].map(str).str.split('.').str[0] +s+\ dataset['endres'].map(str).str.split('.').str[0] +s+ dataset['mw'].map(str).str.split('.').str[0] +s+ \ dataset['charge'].map(str).str.split('.').str[0] +s+ dataset['rt_n14'].map(str).str.split('.').str[0] dataset['TID'] = dataset['protein'] +s+ dataset['startres'].map(str).str.split('.').str[0] +s+\ dataset['endres'].map(str).str.split('.').str[0] +s+ dataset['mw'].map(str).str.split('.').str[0] +s+ \ dataset['charge'].map(str).str.split('.').str[0] return dataset