"report_comment",
type=str,
help="Custom comment, will be printed at the top of the report.")
@click.option(
"-n",
"--filename",
type=str,
help="Report filename. Use '[yellow i]stdout[/]' to print to standard out."
)
@click.option("-o",
"--outdir",
type=str,
help="Create report in the specified output directory.")
@click.option("-t",
"--template",
type=click.Choice(config.avail_templates),
metavar=None,
help="Report template to use.")
@click.option("--tag",
"module_tag",
type=str,
multiple=True,
help="Use only modules which tagged with this keyword")
@click.option(
"--view-tags",
is_flag=True,
callback=util_functions.view_all_tags,
expose_value=False,
is_eager=True,
help="View the available tags and which modules they load",
)
@click.group()
def main():
find_airflow_sources_root()
option_verbose = click.option(
"-v",
"--verbose",
is_flag=True,
help="Print verbose information about performed steps",
)
option_python_version = click.option(
'-p',
'--python',
type=click.Choice(ALLOWED_PYTHON_MAJOR_MINOR_VERSIONS),
help='Choose your python version',
)
option_backend = click.option(
'-b',
'--backend',
type=click.Choice(ALLOWED_BACKENDS),
help='Choose your backend database',
)
option_github_repository = click.option(
'-g',
'--github-repository',
help='GitHub repository used to pull, push images. Default: apache/airflow.'
)
log_fh.setFormatter(
logging.Formatter(
"[%(asctime)s] %(name)-20s [%(levelname)-7s] %(message)s"))
log.addHandler(log_fh)
# nf-core list
@nf_core_cli.command()
@click.argument("keywords",
required=False,
nargs=-1,
metavar="<filter keywords>")
@click.option(
"-s",
"--sort",
type=click.Choice(["release", "pulled", "name", "stars"]),
default="release",
help="How to sort listed pipelines",
)
@click.option("--json",
is_flag=True,
default=False,
help="Print full output as JSON")
@click.option("--show-archived",
is_flag=True,
default=False,
help="Print archived workflows")
def list(keywords, sort, json, show_archived):
"""
List available nf-core pipelines with local info.
# KIND, either express or implied. See the License for the
# specific language governing permissions and limitations
# under the License.
import os
import rich_click as click
from airflow import settings
from airflow.utils.cli import ColorMode
from airflow.utils.timezone import parse as parsedate
BUILD_DOCS = "BUILDING_AIRFLOW_DOCS" in os.environ
click_color = click.option(
'--color',
type=click.Choice([ColorMode.ON, ColorMode.OFF, ColorMode.AUTO]),
default=ColorMode.AUTO,
help="Do emit colored output (default: auto)",
)
click_conf = click.option(
'-c',
'--conf',
help="JSON string that gets pickled into the DagRun's conf attribute")
click_daemon = click.option(
"-D",
"--daemon",
'daemon_',
is_flag=True,
help="Daemonize instead of running in the foreground")
click_dag_id = click.argument("dag_id", help="The id of the dag")
click_dag_id_opt = click.option("-d", "--dag-id", help="The id of the dag")
is_flag=True,
help="Print verbose information about performed steps.",
envvar='VERBOSE')
option_dry_run = click.option(
"-D",
"--dry-run",
is_flag=True,
help="If dry-run is set, commands are only printed, not executed.",
envvar='DRY_RUN',
)
option_python = click.option(
'-p',
'--python',
type=click.Choice(ALLOWED_PYTHON_MAJOR_MINOR_VERSIONS),
help='Python version to use.',
envvar='PYTHON_MAJOR_MINOR_VERSION',
)
option_backend = click.option(
'-b',
'--backend',
help="Database backend to use.",
type=click.Choice(ALLOWED_BACKENDS),
)
option_integration = click.option(
'--integration',
help="Integration(s) to enable when running (can be more than one).",
type=click.Choice(ALLOWED_INTEGRATIONS),
'Set-ExecutionPolicy Unrestricted -Scope CurrentUser'
])
script_path = subprocess.check_output(
['powershell', '-NoProfile', 'echo $profile']).strip()
command_to_execute = f". {autocomplete_path}"
write_to_shell(command_to_execute, script_path.decode("utf-8"),
breeze_comment)
else:
click.echo(
f"Link for manually adding the autocompletion script to {shell} profile"
)
@main.command(name='config')
@click.option('--python',
type=click.Choice(ALLOWED_PYTHON_MAJOR_MINOR_VERSION))
@click.option('--backend', type=click.Choice(ALLOWED_BACKENDS))
@click.option('--cheatsheet/--no-cheatsheet', default=None)
@click.option('--asciiart/--no-asciiart', default=None)
def change_config(python, backend, cheatsheet, asciiart):
"""
Toggles on/off cheatsheet, asciiart
"""
if asciiart:
console.print('[blue] ASCIIART enabled')
delete_cache('suppress_asciiart')
elif asciiart is not None:
touch_cache_file('suppress_asciiart')
else:
pass
if cheatsheet:
"-v", "--verbose", is_flag=True, help="Print verbose information about performed steps.", envvar='VERBOSE'
)
option_dry_run = click.option(
"-D",
"--dry-run",
is_flag=True,
help="If dry-run is set, commands are only printed, not executed.",
envvar='DRY_RUN',
)
option_python = click.option(
'-p',
'--python',
type=click.Choice(ALLOWED_PYTHON_MAJOR_MINOR_VERSIONS),
help='Python version to use.',
envvar='PYTHON_MAJOR_MINOR_VERSION',
)
option_backend = click.option(
'-b',
'--backend',
help="Database backend to use.",
type=click.Choice(ALLOWED_BACKENDS),
)
option_integration = click.option(
'--integration',
help="Integration(s) to enable when running (can be more than one).",
type=click.Choice(ALLOWED_INTEGRATIONS),
click_completion.init()
@click.group()
def main():
find_airflow_sources_root()
option_verbose = click.option(
"-v", "--verbose", is_flag=True, help="Print verbose information about performed steps", envvar='VERBOSE'
)
option_python_version = click.option(
'-p',
'--python',
type=click.Choice(ALLOWED_PYTHON_MAJOR_MINOR_VERSIONS),
help='Choose your python version',
envvar='PYTHON_MAJOR_MINOR_VERSION',
)
option_backend = click.option(
'-b',
'--backend',
type=click.Choice(ALLOWED_BACKENDS),
help='Choose your backend database',
)
option_github_repository = click.option(
'-g', '--github-repository', help='GitHub repository used to pull, push images. Default: apache/airflow.'
)
