def show_pheno_data(dataset):
print("Querying dataset '%s'..." % dataset)
from roger.persistence import db
from roger.persistence.dge import get_ds
ds = get_ds(db.session(), dataset)
print(ds.pheno_data)
def export_pheno_data(dataset, out_file):
print("Saving pheno data to '%s' ..." % out_file.name)
from roger.persistence import db
from roger.persistence.dge import get_ds
ds = get_ds(db.session(), dataset)
ds.pheno_data.to_csv(out_file, sep="\t")
print("Done")
def export_exprs(dataset, out_file):
print("Saving expression matrix to '%s' ..." % out_file.name)
from roger.persistence import db
from roger.persistence.dge import get_ds
import shutil
ds = get_ds(db.session(), dataset)
shutil.copy(ds.ExprsWC, out_file.name)
print("Done")
def get(self, Name):
session = db.session()
study = get_ds(session, Name)
return make_response(study.feature_data.to_json(orient="table"), 201)
def get(self, Name):
session = db.session()
study = get_ds(session, Name)
return make_response(study.feature_data.to_csv(index=False), 201)
def get(self, Name):
session = db.session()
study = get_ds(session, Name)
return make_response(study.exprs_data.to_csv(), 201)
def get(self, Name):
session = db.session()
study = get_ds(session, Name)
return marshal(study, StudyViewFields)