def display(self,path): import wx from rstbx.viewer.frame import XrayFrame app = wx.App(0) frame = XrayFrame(None, -1, "X-ray image display", size=(1200,1080)) frame.SetSize((1024,780)) frame.load_image(path) frame.Show() app.MainLoop()
def run (args) : app = wx.App(0) wx.SystemOptions.SetOptionInt("osx.openfiledialog.always-show-types", 1) frame = XrayFrame(None, -1, "X-ray image display", size=(800,720)) if (len(args) == 1 and os.path.basename(args[0]) == "DISTL_pickle") : assert os.path.isfile(args[0]) frame.load_distl_output(args[0]) elif (len(args) > 0) : for file_name in args: assert os.path.isfile(file_name) frame.add_file_name_or_data(file_name) frame.load_image(args[0]) frame.Show() app.MainLoop()
def run(args): app = wx.App(0) wx.SystemOptions.SetOption("osx.openfiledialog.always-show-types", "1") frame = XrayFrame(None, -1, "X-ray image display", size=(800,720)) if (len(args) == 1 and os.path.basename(args[0]) == "DISTL_pickle"): assert os.path.isfile(args[0]) frame.load_distl_output(args[0]) elif (len(args) > 0): for file_name in args: assert os.path.isfile(file_name) frame.add_file_name_or_data(file_name) frame.load_image(args[0]) frame.Show() app.MainLoop()
def run_one_index(path, *arguments, **kwargs): assert arguments[0].find("target=") == 0 target = arguments[0].split("=")[1] from xfel.phil_preferences import load_cxi_phil if "--nodisplay" in arguments[1:]: display = False arguments = list(arguments) arguments.remove("--nodisplay") else: display = True args = [ "indexing.data=%s" % path, "beam_search_scope=0.5", "lepage_max_delta = 3.0", "spots_pickle = None", "subgroups_pickle = None", "refinements_pickle = None", "rmsd_tolerance = 5.0", "mosflm_rmsd_tolerance = 5.0", "difflimit_sigma_cutoff=2.0", #"indexing.verbose_cv=True", "indexing.open_wx_viewer=%s" % display ] + list(arguments[1:]) horizons_phil = load_cxi_phil(target, args) info = run_one_index_core(horizons_phil) info.Files = info.organizer.Files info.phil_params = info.horizons_phil # The spotfinder view within cxi.index is an anachronism; no useful purpose anymore # therefore remove this option within cxi.index: return work = wrapper_of_callback(info) if kwargs.get("display", False): import wx from rstbx.viewer import display from rstbx.viewer.frame import XrayFrame display.user_callback = work.user_callback app = wx.App(0) frame = XrayFrame(None, -1, "X-ray image display", size=(1200, 1080)) frame.SetSize((1024, 780)) frame.load_image(path) frame.Show() app.MainLoop()
def run_one_index(path, *arguments, **kwargs): assert arguments[0].find("target=")==0 target = arguments[0].split("=")[1] from xfel.phil_preferences import load_cxi_phil if "--nodisplay" in arguments[1:]: display = False arguments = list(arguments) arguments.remove("--nodisplay") else: display = True args = ["indexing.data=%s"%path, "beam_search_scope=0.5", "lepage_max_delta = 3.0", "spots_pickle = None", "subgroups_pickle = None", "refinements_pickle = None", "rmsd_tolerance = 5.0", "mosflm_rmsd_tolerance = 5.0", "difflimit_sigma_cutoff=2.0", #"indexing.verbose_cv=True", "indexing.open_wx_viewer=%s"%display ] + list(arguments[1:]) horizons_phil = load_cxi_phil(target, args) info = run_one_index_core(horizons_phil) info.Files = info.organizer.Files info.phil_params = info.horizons_phil # The spotfinder view within cxi.index is an anachronism; no useful purpose anymore # therefore remove this option within cxi.index: return work = wrapper_of_callback(info) if kwargs.get("display",False): import wx from rstbx.viewer import display from rstbx.viewer.frame import XrayFrame display.user_callback = work.user_callback app = wx.App(0) frame = XrayFrame(None, -1, "X-ray image display", size=(1200,1080)) frame.SetSize((1024,780)) frame.load_image(path) frame.Show() app.MainLoop()