#!/usr/bin/python
from rts2saf.log import Logger
from rts2saf.rts2exec import Rts2Exec
from rts2.json import JSONProxy
class Args(object):
def __init__(self):
pass
args=Args()
args.toPath='/var/log'
args.logfile= 'rts2-debug'
args.level='DEBUG'
debug=False
logger= Logger(debug=debug, args=args ).logger
proxy=JSONProxy()
ex= Rts2Exec(debug=debug, proxy=proxy, logger=logger)
ex.reeanableEXEC()
logger.info('rts2saf_reenable_exec.py: reenabled EXEC')
#!/usr/bin/python
from rts2saf.log import Logger
from rts2saf.rts2exec import Rts2Exec
from rts2.json import JSONProxy
class Args(object):
def __init__(self):
pass
args = Args()
args.toPath = '/var/log'
args.logfile = 'rts2-debug'
args.level = 'DEBUG'
debug = False
logger = Logger(debug=debug, args=args).logger
proxy = JSONProxy()
ex = Rts2Exec(debug=debug, proxy=proxy, logger=logger)
ex.reeanableEXEC()
logger.info('rts2saf_reenable_exec.py: reenabled EXEC')
except Exception, e:
logger.error('rts2saf_focus: no JSON connection for: {0}, {1}, {2}'.format(rt.cfg['URL'],rt.cfg['RTS2_HTTPD_USERNAME'],rt.cfg['PASSWORD']))
sys.exit(1)
# create all devices
# attention: .create() at the end
# filters are not yet devices
# check always True, we need to set limits either from device or from configuration
foc= CreateFocuser(debug=args.debug, proxy=proxy, check=True, rangeFocToff=args.focRange, blind=args.blind, verbose=args.verbose, rt=rt, logger=logger).create()
if foc==None or not isinstance(foc, Focuser):
logger.error('rts2saf_focus: could not create object for focuser: {}, exiting'.format(rt.cfg['FOCUSER_NAME']))
sys.exit(1)
if args.focDef:
foc.writeFocDef(proxy=proxy, focDef=args.focDef)
logger.info('rts2saf_focus: {0} FOC_DEF: {1} set'.format(foc.name,args.focDef))
filters= CreateFilters(debug=args.debug, proxy=proxy, check=args.checkConfig, verbose=args.verbose, rt=rt, logger=logger).create()
ftwc = CreateFilterWheels(filters=filters, foc=foc, debug=args.debug, proxy=proxy, check=args.checkConfig, blind=args.blind, verbose=args.verbose, rt=rt, logger=logger)
ftws = ftwc.create()
# at least one even if it is FAKE_FTW
if ftws==None or not isinstance(ftws[0], FilterWheel):
logger.error('rts2saf_focus: could not create object for filter wheel: {}, exiting'.format(rt.cfg['FILTER WHEELS INUSE']))
sys.exit(1)
# offsets must be fetched at this point, but not in unittest
ccd= CreateCCD(debug=args.debug, proxy=proxy, ftws=ftws, check=args.checkConfig, fetchOffsets=True, verbose=args.verbose, rt=rt, logger=logger).create()
if ccd==None or not isinstance(ccd, CCD):
logger.error('rts2saf_focus: could not create object for CCD: {}, exiting'.format(rt.cfg['CCD_NAME']))
sys.exit(1)
# filter wheel offsets are at this point read back from CCD
proxy=proxy,
check=True,
rangeFocToff=args.focRange,
blind=args.blind,
verbose=args.verbose,
rt=rt,
logger=logger).create()
if foc == None or not isinstance(foc, Focuser):
logger.error(
'rts2saf_focus: could not create object for focuser: {}, exiting'.
format(rt.cfg['FOCUSER_NAME']))
sys.exit(1)
if args.focDef:
foc.writeFocDef(proxy=proxy, focDef=args.focDef)
logger.info('rts2saf_focus: {0} FOC_DEF: {1} set'.format(
foc.name, args.focDef))
filters = CreateFilters(debug=args.debug,
proxy=proxy,
check=args.checkConfig,
verbose=args.verbose,
rt=rt,
logger=logger).create()
ftwc = CreateFilterWheels(filters=filters,
foc=foc,
debug=args.debug,
proxy=proxy,
check=args.checkConfig,
blind=args.blind,
verbose=args.verbose,
rt=rt,
except Exception, e:
logger.error('rts2af_fwhm: sextractor failed on file: {0}\nerror from sex.sextract: {1}\nexiting'.format(args.fitsFn, e))
sys.exit(1)
fwhmTreshold=rt.cfg['FWHM_LOWER_THRESH']
if args.fwhmThreshold:
fwhmTreshold=args.fwhmThreshold
if dataSxtr is None:
logger.error('rts2af_fwhm: failed on file: {0}, exiting'.format(args.fitsFn))
sys.exit(1)
if( dataSxtr.fwhm <= fwhmTreshold):
try:
logger.info('rts2af_fwhm: no focus run queued, fwhm: {0:5.2f} < {1:5.2f} (thershold)'.format(float(dataSxtr.fwhm), float(fwhmTreshold)))
except Exception, e:
logger.info('rts2af_fwhm: no focus run queued, no FWHM calculated, error: {}'.format(e))
q = None
rts2.createProxy(url=rt.cfg['URL'], username=rt.cfg['RTS2_HTTPD_USERNAME'], password=rt.cfg['PASSWORD'])
try:
q = rts2.Queue(rts2.json.getProxy(), args.queue)
except Exception, e:
logger.error('rts2af_fwhm: no queue named: {0}, doing nothing'.format(args.queue))
if q is not None:
q.load()
for x in q.entries:
if x.get_target().name and 'OnTargetFocus' in x.get_target().name:
q.clear()
# # if I can get the freaking modified cfg file to stop saying the syntax is wrong I can do this
# # TODO double check to make sure astropy dir exists inside ASTROPY_XDG_CONFIG_HOME
# # if rt.cfg['ASTROPY_XDG_CONFIG_HOME'] == None or rt.cfg['ASTROPY_XDG_CACHE_HOME'] == None:
# # logger.error('Astropy problem: HOME env var does not exist and ASTROPY_XDG_CONFIG_HOME or ASTROPY_XDG_CACHE_Home not defined in config')
# # sys.exit(1)
# # else:
# logger.error('Setting Astropy XDG paths')
# os.environ['XDG_CONFIG_HOME'] = '/root/'
# os.environ['XDG_CACHE_HOME'] = '/root/'
#
# from astropy.io.fits import getheader
# if in config file is nothing specified it is a str
if isinstance(rt.cfg['FILTERS_TO_EXCLUDE'], dict):
ftNameS=rt.cfg['FILTERS_TO_EXCLUDE'].keys()
# fitsHeaderName are in reality names of filter wheels
# in the notation of CCD driver (FILTA, FILTB, ...)
hdr = pyfits.open(fitsFn,'readonly')[0].header
for fitsHeaderName in set(rt.cfg['FILTERS_TO_EXCLUDE'].values()):
try:
hdrv = hdr[fitsHeaderName]
except Exception, e:
continue
if hdrv in ftNameS:
logger.info('{0}: skipping FITS file: {1} due to filter wheel:{2}, contains filter:{3} (see config file)'.format(script, fitsFn, fitsHeaderName, hdrv))
sys.exit(1)
imgp_analysis.run()
help=': %(default)s, calculate weighted means')
args = parser.parse_args()
if args.debug:
args.level = 'DEBUG'
args.toconsole = True
# logger
logger = Logger(
debug=args.debug,
args=args).logger # if you need to chage the log format do it here
# hint to the user
if defaultCfg in args.config:
logger.info(
'rts2saf_focus: using default configuration file: {0}'.format(
args.config))
# config
rtc = Configuration(logger=logger)
if not rtc.readConfiguration(fileName=args.config):
logger.error(
'rts2saf_focus: exiting, wrong syntax, check the configuration file: {0}'
.format(args.config))
sys.exit(1)
# overwrite config defaults
rtc.cfg['ANALYZE_FLUX'] = args.flux
rtc.cfg['ANALYZE_ASSOC'] = args.associate
rtc.cfg['ANALYZE_ASSOC_FRACTION'] = args.fractObjs
rtc.cfg['FOCUSER_INTERVAL'] = args.focuserInterval
sys.exit(1)
fwhmTreshold = rt.cfg['FWHM_LOWER_THRESH']
if args.fwhmThreshold:
fwhmTreshold = args.fwhmThreshold
if dataSxtr is None:
logger.error('rts2af_fwhm: failed on file: {0}, exiting'.format(
args.fitsFn))
sys.exit(1)
if (dataSxtr.fwhm <= fwhmTreshold):
try:
logger.info(
'rts2af_fwhm: no focus run queued, fwhm: {0:5.2f} < {1:5.2f} (thershold)'
.format(float(dataSxtr.fwhm), float(fwhmTreshold)))
except Exception, e:
logger.info(
'rts2af_fwhm: no focus run queued, no FWHM calculated, error: {}'
.format(e))
q = None
rts2.createProxy(url=rt.cfg['URL'],
username=rt.cfg['USERNAME'],
password=rt.cfg['PASSWORD'])
try:
q = rts2.Queue(rts2.json.getProxy(), args.queue)
except Exception, e:
logger.error(
'rts2af_fwhm: no queue named: {0}, doing nothing'.format(
parser.add_argument('--emptySlots', dest = 'emptySlots', action = 'store', default = None, type = str, nargs = '+', help = ': %(default)s, list of SPACE separated names of the empty slots')
parser.add_argument('--focuser-interval', dest = 'focuserInterval', action = 'store', default = list(), type = int, nargs = '+', help = ': %(default)s, focuser position interval, positions out side this interval will be ignored')
# ToDo parser.add_argument('--display-failures', dest = 'display_failures', action = 'store_true', default = False, help = ': %(default)s, display focus run where the fit failed')
parser.add_argument('--means', dest = 'means', action = 'store_true', default = False, help = ': %(default)s, calculate weighted means')
args = parser.parse_args()
if args.debug:
args.level = 'DEBUG'
args.toconsole = True
# logger
logger = Logger(debug = args.debug, args = args).logger # if you need to chage the log format do it here
# hint to the user
if defaultCfg in args.config:
logger.info('rts2saf_focus: using default configuration file: {0}'.format(args.config))
# config
rtc = Configuration(logger = logger)
if not rtc.readConfiguration(fileName=args.config):
logger.error('rts2saf_focus: exiting, wrong syntax, check the configuration file: {0}'.format(args.config))
sys.exit(1)
# overwrite config defaults
rtc.cfg['ANALYZE_FLUX'] = args.flux
rtc.cfg['ANALYZE_ASSOC'] = args.associate
rtc.cfg['ANALYZE_ASSOC_FRACTION'] = args.fractObjs
rtc.cfg['FOCUSER_INTERVAL'] = args.focuserInterval
rtc.cfg['WEIGHTED_MEANS'] = args.means