import sys from servers.SAP import SAPserver server=SAPserver() genomeID = '83333.1' sys.stderr.write("Genome: " + str(genomeID) + "\n") prots = server.all_proteins( {"-id" : genomeID} ) print("protein length " + str(len(prots)))
import sys from servers.SAP import SAPserver server = SAPserver() genomes = server.all_genomes({'-complete': 1, '-prokaryotic': 1}) print("There are " + str(len(genomes)) + " genomes") sys.exit(0) for genomeID in genomes: sys.stderr.write("Genome: " + genomes[genomeID] + " (" + str(genomeID) + ")\n") prots = server.all_proteins({'-id': genomeID}) print("There are " + str(len(prots)) + " prots") dna = server.ids_to_sequences({'-ids': list(prots.keys())}) print("There are " + str(len(dna)) + " sequences") funcs = server.ids_to_functions({'-ids': list(prots.keys())}) print("There are " + str(len(funcs)) + " functions")
import sys from servers.SAP import SAPserver server = SAPserver() genomeID = '83333.1' sys.stderr.write("Genome: " + str(genomeID) + "\n") prots = server.all_proteins({"-id": genomeID}) print("protein length " + str(len(prots)))
import sys from servers.SAP import SAPserver server=SAPserver() genomes=server.all_genomes({'-complete':1, '-prokaryotic':1}) print("There are ", len(genomes), " genomes") #sys.exit(0) for genomeID in genomes: sys.stderr.write("Genome: " + genomes[genomeID] + " (" + str(genomeID) + ")\n") prots = server.all_proteins({'-id':genomeID}) print("There are ", len(prots), " prots") dna = server.ids_to_sequences({'-ids':list(prots.keys())}) print("There are ", len(dna), " sequences") funcs = server.ids_to_functions({'-ids':list(prots.keys())}) print("There are ", len(funcs), " functions")