Exemplos de SAPserver.all_proteins em Python

Exemplo n.º 1

Arquivo: test2.py Projeto: linsalrob/SEED_Servers_Python

import sys
from servers.SAP import SAPserver

server=SAPserver()


genomeID = '83333.1'
sys.stderr.write("Genome: " + str(genomeID) + "\n")
prots = server.all_proteins( {"-id" : genomeID} )
print("protein length " + str(len(prots)))

Exemplo n.º 2

import sys
from servers.SAP import SAPserver

server = SAPserver()
genomes = server.all_genomes({'-complete': 1, '-prokaryotic': 1})
print("There are " + str(len(genomes)) + " genomes")

sys.exit(0)
for genomeID in genomes:
    sys.stderr.write("Genome: " + genomes[genomeID] + " (" + str(genomeID) +
                     ")\n")
    prots = server.all_proteins({'-id': genomeID})
    print("There are " + str(len(prots)) + " prots")
    dna = server.ids_to_sequences({'-ids': list(prots.keys())})
    print("There are " + str(len(dna)) + " sequences")
    funcs = server.ids_to_functions({'-ids': list(prots.keys())})
    print("There are " + str(len(funcs)) + " functions")

Exemplo n.º 3

Arquivo: test2.py Projeto: linsalrob/SEED_Servers_Python

import sys
from servers.SAP import SAPserver

server = SAPserver()

genomeID = '83333.1'
sys.stderr.write("Genome: " + str(genomeID) + "\n")
prots = server.all_proteins({"-id": genomeID})
print("protein length " + str(len(prots)))

Exemplo n.º 4

Arquivo: test.py Projeto: taylor-oconnell/SEED_Servers_Python

import sys
from servers.SAP import SAPserver

server=SAPserver()
genomes=server.all_genomes({'-complete':1, '-prokaryotic':1})
print("There are ", len(genomes), " genomes")

#sys.exit(0)
for genomeID in genomes:
    sys.stderr.write("Genome: " + genomes[genomeID] + " (" + str(genomeID) + ")\n")
    prots = server.all_proteins({'-id':genomeID})
    print("There are ", len(prots), " prots")
    dna   = server.ids_to_sequences({'-ids':list(prots.keys())})
    print("There are ", len(dna), " sequences")
    funcs = server.ids_to_functions({'-ids':list(prots.keys())})
    print("There are ", len(funcs), " functions")