def join_gti_tables(gti_table_0, gti_table_1): if not gti_table_0: logging.warn("join_gti_tables: gti_table_0 is None, returned gti_table_1") return gti_table_1 if not gti_table_1: logging.warn("join_gti_tables: gti_table_1 is None, returned gti_table_0") return gti_table_0 gti_0 = get_stingray_gti_from_gti_table (gti_table_0) gti_1 = get_stingray_gti_from_gti_table (gti_table_1) joined_gti = join_gtis(gti_0, gti_1) return get_gti_table_from_stingray_gti(joined_gti)
def join_gti_tables(gti_table_0, gti_table_1): if not gti_table_0: logging.warn( "join_gti_tables: gti_table_0 is None, returned gti_table_1") return gti_table_1 if not gti_table_1: logging.warn( "join_gti_tables: gti_table_1 is None, returned gti_table_0") return gti_table_0 gti_0 = get_stingray_gti_from_gti_table(gti_table_0) gti_1 = get_stingray_gti_from_gti_table(gti_table_1) joined_gti = join_gtis(gti_0, gti_1) return get_gti_table_from_stingray_gti(joined_gti)
def join(self, other): """ Join two lightcurves into a single object. The new Lightcurve object will contain time stamps from both the objects. The count per bin in the resulting object will be the individual count per bin, or the average in case of overlapping time arrays of both lightcurve objects. Good Time intervals are also joined. Note : Time array of both lightcurves should not overlap each other. Parameters ---------- other : Lightcurve object The other Lightcurve object which is supposed to be joined with. Returns ------- lc_new : Lightcurve object The resulting lightcurve object. Example ------- >>> time1 = [5, 10, 15] >>> count1 = [300, 100, 400] >>> time2 = [20, 25, 30] >>> count2 = [600, 1200, 800] >>> lc1 = Lightcurve(time1, count1) >>> lc2 = Lightcurve(time2, count2) >>> lc = lc1.join(lc2) >>> lc.time array([ 5, 10, 15, 20, 25, 30]) >>> lc.counts array([ 300, 100, 400, 600, 1200, 800]) """ if self.mjdref != other.mjdref: raise ValueError("MJDref is different in the two light curves") if self.dt != other.dt: utils.simon("The two light curves have different bin widths.") if( self.tstart < other.tstart ): first_lc = self second_lc = other else: first_lc = other second_lc = self if len(np.intersect1d(self.time, other.time) > 0): utils.simon("The two light curves have overlapping time ranges. " "In the common time range, the resulting count will " "be the average of the counts in the two light " "curves. If you wish to sum, use `lc_sum = lc1 + " "lc2`.") valid_err = False if self.err_dist.lower() != other.err_dist.lower(): simon("Lightcurves have different statistics!" "We are setting the errors to zero.") elif self.err_dist.lower() in valid_statistics: valid_err = True # More conditions can be implemented for other statistics else: raise StingrayError("Statistics not recognized." " Please use one of these: " "{}".format(valid_statistics)) from collections import Counter counts = Counter() counts_err = Counter() for i, time in enumerate(first_lc.time): counts[time] = first_lc.counts[i] counts_err[time] = first_lc.counts_err[i] for i, time in enumerate(second_lc.time): if (counts.get(time) != None): #Common time counts[time] = (counts[time] + second_lc.counts[i]) / 2 #avg counts_err[time] = np.sqrt(( ((counts_err[time]**2) + (second_lc.counts_err[i] **2)) / 2)) else: counts[time] = second_lc.counts[i] counts_err[time] = second_lc.counts_err[i] new_time = list(counts.keys()) new_counts = list(counts.values()) if(valid_err): new_counts_err = list(counts_err.values()) else: new_counts_err = np.zeros_like(new_counts) del[counts, counts_err] else: new_time = np.concatenate([first_lc.time, second_lc.time]) new_counts = np.concatenate([first_lc.counts, second_lc.counts]) new_counts_err = np.concatenate([first_lc.counts_err, second_lc.counts_err]) new_time = np.asarray(new_time) new_counts = np.asarray(new_counts) new_counts_err = np.asarray(new_counts_err) gti = join_gtis(self.gti, other.gti) lc_new = Lightcurve(new_time, new_counts, err=new_counts_err, gti=gti, mjdref=self.mjdref, dt=self.dt) return lc_new
def join(self, other): """ Join two lightcurves into a single object. The new Lightcurve object will contain time stamps from both the objects. The count per bin in the resulting object will be the individual count per bin, or the average in case of overlapping time arrays of both lightcurve objects. Good Time intervals are also joined. Note : Time array of both lightcurves should not overlap each other. Parameters ---------- other : Lightcurve object The other Lightcurve object which is supposed to be joined with. Returns ------- lc_new : Lightcurve object The resulting lightcurve object. Example ------- >>> time1 = [5, 10, 15] >>> count1 = [300, 100, 400] >>> time2 = [20, 25, 30] >>> count2 = [600, 1200, 800] >>> lc1 = Lightcurve(time1, count1) >>> lc2 = Lightcurve(time2, count2) >>> lc = lc1.join(lc2) >>> lc.time array([ 5, 10, 15, 20, 25, 30]) >>> lc.counts array([ 300, 100, 400, 600, 1200, 800]) """ if self.dt != other.dt: utils.simon("The two light curves have different bin widths.") if self.tstart <= other.tstart: new_time = np.unique(np.concatenate([self.time, other.time])) else: new_time = np.unique(np.concatenate([other.time, self.time])) if len(new_time) != len(self.time) + len(other.time): utils.simon("The two light curves have overlapping time ranges. " "In the common time range, the resulting count will " "be the average of the counts in the two light " "curves. If you wish to sum, use `lc_sum = lc1 + " "lc2`.") new_counts = [] # For every time stamp, get the individual time counts and add them. for time in new_time: try: count1 = self.counts[np.where(self.time == time)[0][0]] except IndexError: count1 = None try: count2 = other.counts[np.where(other.time == time)[0][0]] except IndexError: count2 = None if count1 is not None: if count2 is not None: # Average the overlapping counts new_counts.append((count1 + count2) / 2) else: new_counts.append(count1) else: new_counts.append(count2) new_counts = np.asarray(new_counts) gti = join_gtis(self.gti, other.gti) lc_new = Lightcurve(new_time, new_counts, gti=gti) return lc_new
def join(self, other): """ Join two lightcurves into a single object. The new Lightcurve object will contain time stamps from both the objects. The count per bin in the resulting object will be the individual count per bin, or the average in case of overlapping time arrays of both lightcurve objects. Good Time intervals are also joined. Note : Time array of both lightcurves should not overlap each other. Parameters ---------- other : Lightcurve object The other Lightcurve object which is supposed to be joined with. Returns ------- lc_new : Lightcurve object The resulting lightcurve object. Example ------- >>> time1 = [5, 10, 15] >>> count1 = [300, 100, 400] >>> time2 = [20, 25, 30] >>> count2 = [600, 1200, 800] >>> lc1 = Lightcurve(time1, count1) >>> lc2 = Lightcurve(time2, count2) >>> lc = lc1.join(lc2) >>> lc.time array([ 5, 10, 15, 20, 25, 30]) >>> lc.counts array([ 300, 100, 400, 600, 1200, 800]) """ if self.dt != other.dt: utils.simon("The two light curves have different bin widths.") if self.tstart <= other.tstart: new_time = np.unique(np.concatenate([self.time, other.time])) else: new_time = np.unique(np.concatenate([other.time, self.time])) if len(new_time) != len(self.time) + len(other.time): utils.simon("The two light curves have overlapping time ranges. " "In the common time range, the resulting count will " "be the average of the counts in the two light " "curves. If you wish to sum, use `lc_sum = lc1 + " "lc2`.") new_counts = [] # For every time stamp, get the individual time counts and add them. for time in new_time: try: count1 = self.counts[np.where(self.time == time)[0][0]] except IndexError: count1 = None try: count2 = other.counts[np.where(other.time == time)[0][0]] except IndexError: count2 = None if count1 is not None: if count2 is not None: # Average the overlapping counts new_counts.append((count1 + count2) / 2) else: new_counts.append(count1) else: new_counts.append(count2) new_counts = np.asarray(new_counts) gti = join_gtis(self.gti, other.gti) lc_new = Lightcurve(new_time, new_counts, gti=gti) return lc_new
def test_join_gtis_overlapping(self): gti0 = [[0, 1], [2, 3], [4, 8]] gti1 = [[7, 8], [10, 11], [12, 13]] assert np.all( join_gtis(gti0, gti1) == np.array([[0, 1], [2, 3], [4, 8], [10, 11], [12, 13]]))
def join(self, other): """ Join two lightcurves into a single object. The new Lightcurve object will contain time stamps from both the objects. The count per bin in the resulting object will be the individual count per bin, or the average in case of overlapping time arrays of both lightcurve objects. Good Time intervals are also joined. Note : Time array of both lightcurves should not overlap each other. Parameters ---------- other : Lightcurve object The other Lightcurve object which is supposed to be joined with. Returns ------- lc_new : Lightcurve object The resulting lightcurve object. Example ------- >>> time1 = [5, 10, 15] >>> count1 = [300, 100, 400] >>> time2 = [20, 25, 30] >>> count2 = [600, 1200, 800] >>> lc1 = Lightcurve(time1, count1) >>> lc2 = Lightcurve(time2, count2) >>> lc = lc1.join(lc2) >>> lc.time array([ 5, 10, 15, 20, 25, 30]) >>> lc.counts array([ 300, 100, 400, 600, 1200, 800]) """ if self.dt != other.dt: utils.simon("The two light curves have different bin widths.") if self.tstart <= other.tstart: new_time = np.unique(np.concatenate([self.time, other.time])) else: new_time = np.unique(np.concatenate([other.time, self.time])) if len(new_time) != len(self.time) + len(other.time): utils.simon("The two light curves have overlapping time ranges. " "In the common time range, the resulting count will " "be the average of the counts in the two light " "curves. If you wish to sum, use `lc_sum = lc1 + " "lc2`.") new_counts = [] new_counts_err = [] # For every time stamp, get the individual time counts and add them. for time in new_time: try: count1 = self.counts[np.where(self.time == time)[0][0]] count1_err = self.counts_err[np.where(self.time == time)[0][0]] except IndexError: count1 = None count1_err = None try: count2 = other.counts[np.where(other.time == time)[0][0]] count2_err = other.counts_err[np.where(other.time == time)[0][0]] except IndexError: count2 = None count2_err = None if count1 is not None: if count2 is not None: # Average the overlapping counts new_counts.append((count1 + count2) / 2) if self.err_dist.lower() != other.err_dist.lower(): simon("Lightcurves have different statistics!" "We are setting the errors to zero.") new_counts_err = np.zeros_like(new_counts) elif self.err_dist.lower() in valid_statistics: new_counts_err.append(np.sqrt(((count1_err**2) + (count2_err**2)) / 2)) # More conditions can be implemented for other statistics else: raise StingrayError("Statistics not recognized." " Please use one of these: " "{}".format(valid_statistics)) else: new_counts.append(count1) new_counts_err.append(count1_err) else: new_counts.append(count2) new_counts_err.append(count2_err) new_counts = np.asarray(new_counts) new_counts_err = np.asarray(new_counts_err) gti = join_gtis(self.gti, other.gti) lc_new = Lightcurve(new_time, new_counts, err=new_counts_err, gti=gti) return lc_new