def testFeatureSets():
testDataDir = "tests/data/datasets/dataset1/sequenceAnnotations"
for test in datadriven.makeTests(testDataDir, FeatureSetTests, "*.db"):
yield test
def testFeatureSets():
testDataDir = "tests/data/datasets/dataset1/sequenceAnnotations"
for test in datadriven.makeTests(testDataDir, FeatureSetTests, "*.db"):
yield test
def testReads():
testDataDir = os.path.join(paths.testDataDir, "datasets/dataset1/reads")
for test in datadriven.makeTests(testDataDir, ReadGroupSetTest, '*.bam'):
yield test
def testReads():
testDataDir = "tests/data/reads"
for test in datadriven.makeTests(testDataDir, ReadGroupSetTest):
yield test
def testVariantSets():
testDataDir = os.path.join(
paths.testDataDir, "datasets/dataset1/variants")
for test in datadriven.makeTests(testDataDir, VariantSetTest):
yield test
def testReferenceSets():
testDataDir = os.path.join(paths.testDataDir, "referenceSets")
pattern = "*.fa.gz"
for test in datadriven.makeTests(testDataDir, ReferenceSetTest, pattern):
yield test
def testReads():
testDataDir = os.path.join(paths.testDataDir, "datasets/dataset1/reads")
for test in datadriven.makeTests(
testDataDir, ReadGroupSetTest, '*.bam'):
yield test
def testVariantSets():
testDataDir = "tests/data/variants"
for test in datadriven.makeTests(testDataDir, VariantSetTest):
yield test
def testReferenceSets():
testDataDir = os.path.join(paths.testDataDir, "ontologies")
pattern = "*.obo"
for test in datadriven.makeTests(
testDataDir, OntologyTest, pattern):
yield test
def testReferenceSets():
testDataDir = "tests/data/references"
for test in datadriven.makeTests(testDataDir, ReferenceSetTest):
yield test
def testRnaQuantification():
testDataDir = "tests/data/datasets/dataset1/rnaQuant"
for test in datadriven.makeTests(
testDataDir, RnaQuantificationTest, '*.db'):
yield test
def testReferenceSets():
testDataDir = os.path.join(paths.testDataDir, "referenceSets")
for test in datadriven.makeTests(testDataDir, ReferenceSetTest):
yield test
def testReferenceSets():
testDataDir = "tests/data/referenceSets"
for test in datadriven.makeTests(testDataDir, ReferenceSetTest):
yield test
def testReads():
testDataDir = "tests/data/datasets/dataset1/reads"
for test in datadriven.makeTests(
testDataDir, ReadGroupSetTest, '*.bam'):
yield test
def testRnaQuantification():
testDataDir = "tests/data/datasets/dataset1/rnaQuant"
for test in datadriven.makeTests(testDataDir, RnaQuantificationTest,
'*.db'):
yield test
def testVariantSets():
testDataDir = os.path.join(paths.testDataDir, "datasets/dataset1/variants")
for test in datadriven.makeTests(testDataDir, VariantSetTest):
yield test
def testVariantSets():
testDataDir = "tests/data/datasets/dataset1/variants"
for test in datadriven.makeTests(testDataDir, VariantSetTest):
yield test
def testReads():
testDataDir = "tests/data/dataset1/reads"
for test in datadriven.makeTests(testDataDir, ReadGroupSetTest):
yield test
def testVariantAnnotationSets():
testDataDir = "tests/data/datasets/dataset1/variants"
for test in datadriven.makeTests(testDataDir, VariantAnnotationSetTest):
yield test
def testReferenceSets():
testDataDir = os.path.join(paths.testDataDir, "referenceSets")
pattern = "*.fa.gz"
for test in datadriven.makeTests(testDataDir, ReferenceSetTest, pattern):
yield test
def testG2P():
testDataDir = os.path.join(
paths.testDataDir, 'datasets/dataset1/phenotypes')
for test in datadriven.makeTests(testDataDir, PhenotypeAssociationSetTest):
yield test
def testReferenceSets():
testDataDir = os.path.join(paths.testDataDir, "ontologies")
pattern = "*.obo"
for test in datadriven.makeTests(
testDataDir, OntologyTest, pattern):
yield test
