def testFeatureSets(): testDataDir = "tests/data/datasets/dataset1/sequenceAnnotations" for test in datadriven.makeTests(testDataDir, FeatureSetTests, "*.db"): yield test
def testReads(): testDataDir = os.path.join(paths.testDataDir, "datasets/dataset1/reads") for test in datadriven.makeTests(testDataDir, ReadGroupSetTest, '*.bam'): yield test
def testReads(): testDataDir = "tests/data/reads" for test in datadriven.makeTests(testDataDir, ReadGroupSetTest): yield test
def testVariantSets(): testDataDir = os.path.join( paths.testDataDir, "datasets/dataset1/variants") for test in datadriven.makeTests(testDataDir, VariantSetTest): yield test
def testReferenceSets(): testDataDir = os.path.join(paths.testDataDir, "referenceSets") pattern = "*.fa.gz" for test in datadriven.makeTests(testDataDir, ReferenceSetTest, pattern): yield test
def testReads(): testDataDir = os.path.join(paths.testDataDir, "datasets/dataset1/reads") for test in datadriven.makeTests( testDataDir, ReadGroupSetTest, '*.bam'): yield test
def testVariantSets(): testDataDir = "tests/data/variants" for test in datadriven.makeTests(testDataDir, VariantSetTest): yield test
def testReferenceSets(): testDataDir = os.path.join(paths.testDataDir, "ontologies") pattern = "*.obo" for test in datadriven.makeTests( testDataDir, OntologyTest, pattern): yield test
def testReferenceSets(): testDataDir = "tests/data/references" for test in datadriven.makeTests(testDataDir, ReferenceSetTest): yield test
def testRnaQuantification(): testDataDir = "tests/data/datasets/dataset1/rnaQuant" for test in datadriven.makeTests( testDataDir, RnaQuantificationTest, '*.db'): yield test
def testReferenceSets(): testDataDir = os.path.join(paths.testDataDir, "referenceSets") for test in datadriven.makeTests(testDataDir, ReferenceSetTest): yield test
def testReferenceSets(): testDataDir = "tests/data/referenceSets" for test in datadriven.makeTests(testDataDir, ReferenceSetTest): yield test
def testReads(): testDataDir = "tests/data/datasets/dataset1/reads" for test in datadriven.makeTests( testDataDir, ReadGroupSetTest, '*.bam'): yield test
def testRnaQuantification(): testDataDir = "tests/data/datasets/dataset1/rnaQuant" for test in datadriven.makeTests(testDataDir, RnaQuantificationTest, '*.db'): yield test
def testVariantSets(): testDataDir = os.path.join(paths.testDataDir, "datasets/dataset1/variants") for test in datadriven.makeTests(testDataDir, VariantSetTest): yield test
def testVariantSets(): testDataDir = "tests/data/datasets/dataset1/variants" for test in datadriven.makeTests(testDataDir, VariantSetTest): yield test
def testReads(): testDataDir = "tests/data/dataset1/reads" for test in datadriven.makeTests(testDataDir, ReadGroupSetTest): yield test
def testVariantAnnotationSets(): testDataDir = "tests/data/datasets/dataset1/variants" for test in datadriven.makeTests(testDataDir, VariantAnnotationSetTest): yield test
def testG2P(): testDataDir = os.path.join( paths.testDataDir, 'datasets/dataset1/phenotypes') for test in datadriven.makeTests(testDataDir, PhenotypeAssociationSetTest): yield test