def mock_tnth_questionnairebanks():
for name in (symptom_tracker_instruments):
TestCase.add_questionnaire(name=name)
# Symptom Tracker Baseline
self_management = INTERVENTION.SELF_MANAGEMENT
st_qb = QuestionnaireBank(
name='symptom_tracker',
classification='baseline',
intervention_id=self_management.id,
start='{"days": 0}',
expired='{"months": 3}'
)
for rank, instrument in enumerate(symptom_tracker_instruments):
q = Questionnaire.find_by_name(name=instrument)
qbq = QuestionnaireBankQuestionnaire(questionnaire=q, rank=rank)
st_qb.questionnaires.append(qbq)
# Symptom Tracker Recurrence
st_recur = Recur(
start='{"months": 3}', cycle_length='{"months": 3}',
termination='{"months": 27}')
with SessionScope(db):
db.session.add(st_qb)
db.session.add(st_recur)
db.session.commit()
self_management = INTERVENTION.SELF_MANAGEMENT
st_recur_qb = QuestionnaireBank(
name='symptom_tracker_recurring',
classification='recurring',
intervention_id=self_management.id,
start='{"days": 0}',
expired='{"months": 3}',
recurs=[st_recur]
)
for rank, instrument in enumerate(symptom_tracker_instruments):
q = Questionnaire.find_by_name(name=instrument)
qbq = QuestionnaireBankQuestionnaire(questionnaire=q, rank=rank)
st_recur_qb.questionnaires.append(qbq)
with SessionScope(db):
db.session.add(st_recur_qb)
db.session.commit()
def mock_tnth_questionnairebanks():
for name in (symptom_tracker_instruments):
TestCase.add_questionnaire(name=name)
# Symptom Tracker Baseline
self_management = INTERVENTION.SELF_MANAGEMENT
st_qb = QuestionnaireBank(
name='symptom_tracker',
classification='baseline',
intervention_id=self_management.id,
start='{"days": 0}',
expired='{"months": 3}'
)
for rank, instrument in enumerate(symptom_tracker_instruments):
q = Questionnaire.find_by_name(name=instrument)
qbq = QuestionnaireBankQuestionnaire(questionnaire=q, rank=rank)
st_qb.questionnaires.append(qbq)
# Symptom Tracker Recurrence
st_recur = Recur(
start='{"months": 3}', cycle_length='{"months": 3}',
termination='{"months": 27}')
with SessionScope(db):
db.session.add(st_qb)
db.session.add(st_recur)
db.session.commit()
self_management = INTERVENTION.SELF_MANAGEMENT
st_recur_qb = QuestionnaireBank(
name='symptom_tracker_recurring',
classification='recurring',
intervention_id=self_management.id,
start='{"days": 0}',
expired='{"months": 3}',
recurs=[st_recur]
)
for rank, instrument in enumerate(symptom_tracker_instruments):
q = Questionnaire.find_by_name(name=instrument)
qbq = QuestionnaireBankQuestionnaire(questionnaire=q, rank=rank)
st_recur_qb.questionnaires.append(qbq)
with SessionScope(db):
db.session.add(st_recur_qb)
db.session.commit()
def mock_eproms_questionnairebanks():
# Define base ResearchProtocols
localized_protocol = ResearchProtocol(name='localized_protocol')
metastatic_protocol = ResearchProtocol(name='metastatic_protocol')
with SessionScope(db):
db.session.add(localized_protocol)
db.session.add(metastatic_protocol)
db.session.commit()
localized_protocol = db.session.merge(localized_protocol)
metastatic_protocol = db.session.merge(metastatic_protocol)
locpro_id = localized_protocol.id
metapro_id = metastatic_protocol.id
# Define test Orgs and QuestionnaireBanks for each group
localized_org = Organization(name='localized')
localized_org.research_protocols.append(localized_protocol)
metastatic_org = Organization(name='metastatic')
metastatic_org.research_protocols.append(metastatic_protocol)
# from https://docs.google.com/spreadsheets/d/\
# 1oJ8HKfMHOdXkSshjRlr8lFXxT4aUHX5ntxnKMgf50wE/edit#gid=1339608238
three_q_recur = Recur(
start='{"months": 3}', cycle_length='{"months": 6}',
termination='{"months": 24}')
four_q_recur = Recur(
start='{"months": 6}', cycle_length='{"years": 1}',
termination='{"months": 33}')
six_q_recur = Recur(
start='{"years": 1}', cycle_length='{"years": 1}',
termination='{"years": 3, "months": 3}')
for name in (localized_instruments.union(*(
metastatic_baseline_instruments,
metastatic_indefinite_instruments,
metastatic_3,
metastatic_4,
metastatic_6))):
TestCase.add_questionnaire(name=name)
with SessionScope(db):
db.session.add(localized_org)
db.session.add(metastatic_org)
db.session.add(three_q_recur)
db.session.add(four_q_recur)
db.session.add(six_q_recur)
db.session.commit()
localized_org, metastatic_org = map(
db.session.merge, (localized_org, metastatic_org))
three_q_recur = db.session.merge(three_q_recur)
four_q_recur = db.session.merge(four_q_recur)
six_q_recur = db.session.merge(six_q_recur)
# Localized baseline
l_qb = QuestionnaireBank(
name='localized',
classification='baseline',
research_protocol_id=locpro_id,
start='{"days": 0}',
overdue='{"days": 7}',
expired='{"months": 3}')
for rank, instrument in enumerate(localized_instruments):
q = Questionnaire.find_by_name(name=instrument)
qbq = QuestionnaireBankQuestionnaire(questionnaire=q, rank=rank)
l_qb.questionnaires.append(qbq)
# Metastatic baseline
mb_qb = QuestionnaireBank(
name='metastatic',
classification='baseline',
research_protocol_id=metapro_id,
start='{"days": 0}',
overdue='{"days": 30}',
expired='{"months": 3}')
for rank, instrument in enumerate(metastatic_baseline_instruments):
q = Questionnaire.find_by_name(name=instrument)
qbq = QuestionnaireBankQuestionnaire(questionnaire=q, rank=rank)
mb_qb.questionnaires.append(qbq)
# Metastatic indefinite
mi_qb = QuestionnaireBank(
name='metastatic_indefinite',
classification='indefinite',
research_protocol_id=metapro_id,
start='{"days": 0}',
expired='{"years": 50}')
for rank, instrument in enumerate(metastatic_indefinite_instruments):
q = Questionnaire.find_by_name(name=instrument)
qbq = QuestionnaireBankQuestionnaire(questionnaire=q, rank=rank)
mi_qb.questionnaires.append(qbq)
# Metastatic recurring 3
mr3_qb = QuestionnaireBank(
name='metastatic_recurring3',
classification='recurring',
research_protocol_id=metapro_id,
start='{"days": 0}',
overdue='{"days": 30}',
expired='{"months": 3}',
recurs=[three_q_recur])
for rank, instrument in enumerate(metastatic_3):
q = Questionnaire.find_by_name(name=instrument)
qbq = QuestionnaireBankQuestionnaire(questionnaire=q, rank=rank)
mr3_qb.questionnaires.append(qbq)
# Metastatic recurring 4
mr4_qb = QuestionnaireBank(
name='metastatic_recurring4',
classification='recurring',
research_protocol_id=metapro_id,
recurs=[four_q_recur],
start='{"days": 0}',
overdue='{"days": 30}',
expired='{"months": 3}')
for rank, instrument in enumerate(metastatic_4):
q = Questionnaire.find_by_name(name=instrument)
qbq = QuestionnaireBankQuestionnaire(questionnaire=q, rank=rank)
mr4_qb.questionnaires.append(qbq)
# Metastatic recurring 6
mr6_qb = QuestionnaireBank(
name='metastatic_recurring6',
classification='recurring',
research_protocol_id=metapro_id,
recurs=[six_q_recur],
start='{"days": 0}',
overdue='{"days": 30}',
expired='{"months": 3}')
for rank, instrument in enumerate(metastatic_6):
q = Questionnaire.find_by_name(name=instrument)
qbq = QuestionnaireBankQuestionnaire(questionnaire=q, rank=rank)
mr6_qb.questionnaires.append(qbq)
with SessionScope(db):
db.session.add(l_qb)
db.session.add(mb_qb)
db.session.add(mi_qb)
db.session.add(mr3_qb)
db.session.add(mr4_qb)
db.session.add(mr6_qb)
db.session.commit()
def mock_eproms_questionnairebanks():
# Define base ResearchProtocols
localized_protocol = ResearchProtocol(name='localized_protocol')
metastatic_protocol = ResearchProtocol(name='metastatic_protocol')
with SessionScope(db):
db.session.add(localized_protocol)
db.session.add(metastatic_protocol)
db.session.commit()
localized_protocol = db.session.merge(localized_protocol)
metastatic_protocol = db.session.merge(metastatic_protocol)
locpro_id = localized_protocol.id
metapro_id = metastatic_protocol.id
# Define test Orgs and QuestionnaireBanks for each group
localized_org = Organization(name='localized')
localized_org.research_protocols.append(localized_protocol)
metastatic_org = Organization(name='metastatic')
metastatic_org.research_protocols.append(metastatic_protocol)
# from https://docs.google.com/spreadsheets/d/\
# 1oJ8HKfMHOdXkSshjRlr8lFXxT4aUHX5ntxnKMgf50wE/edit#gid=1339608238
three_q_recur = Recur(start='{"months": 3}',
cycle_length='{"months": 6}',
termination='{"months": 24}')
four_q_recur1 = Recur(start='{"months": 6}',
cycle_length='{"years": 1}',
termination='{"months": 21}')
four_q_recur2 = Recur(start='{"months": 30}',
cycle_length='{"years": 1}',
termination='{"months": 33}')
six_q_recur = Recur(start='{"years": 1}',
cycle_length='{"years": 1}',
termination='{"years": 3, "months": 3}')
for name in (localized_instruments.union(
*(metastatic_baseline_instruments,
metastatic_indefinite_instruments, metastatic_3, metastatic_4,
metastatic_6))):
TestCase.add_questionnaire(name=name)
with SessionScope(db):
db.session.add(localized_org)
db.session.add(metastatic_org)
db.session.add(three_q_recur)
db.session.add(four_q_recur1)
db.session.add(four_q_recur2)
db.session.add(six_q_recur)
db.session.commit()
localized_org, metastatic_org = map(db.session.merge,
(localized_org, metastatic_org))
three_q_recur = db.session.merge(three_q_recur)
four_q_recur1 = db.session.merge(four_q_recur1)
four_q_recur2 = db.session.merge(four_q_recur2)
six_q_recur = db.session.merge(six_q_recur)
# Localized baseline
l_qb = QuestionnaireBank(name='localized',
classification='baseline',
research_protocol_id=locpro_id,
start='{"days": 0}',
overdue='{"days": 7}',
expired='{"months": 3}')
for rank, instrument in enumerate(localized_instruments):
q = Questionnaire.find_by_name(name=instrument)
qbq = QuestionnaireBankQuestionnaire(questionnaire=q, rank=rank)
l_qb.questionnaires.append(qbq)
# Metastatic baseline
mb_qb = QuestionnaireBank(name='metastatic',
classification='baseline',
research_protocol_id=metapro_id,
start='{"days": 0}',
overdue='{"days": 30}',
expired='{"months": 3}')
for rank, instrument in enumerate(metastatic_baseline_instruments):
q = Questionnaire.find_by_name(name=instrument)
qbq = QuestionnaireBankQuestionnaire(questionnaire=q, rank=rank)
mb_qb.questionnaires.append(qbq)
# Metastatic indefinite
mi_qb = QuestionnaireBank(name='metastatic_indefinite',
classification='indefinite',
research_protocol_id=metapro_id,
start='{"days": 0}',
expired='{"years": 50}')
for rank, instrument in enumerate(metastatic_indefinite_instruments):
q = Questionnaire.find_by_name(name=instrument)
qbq = QuestionnaireBankQuestionnaire(questionnaire=q, rank=rank)
mi_qb.questionnaires.append(qbq)
# Metastatic recurring 3
mr3_qb = QuestionnaireBank(name='metastatic_recurring3',
classification='recurring',
research_protocol_id=metapro_id,
start='{"days": 0}',
overdue='{"days": 30}',
expired='{"months": 3}',
recurs=[three_q_recur])
for rank, instrument in enumerate(metastatic_3):
q = Questionnaire.find_by_name(name=instrument)
qbq = QuestionnaireBankQuestionnaire(questionnaire=q, rank=rank)
mr3_qb.questionnaires.append(qbq)
# Metastatic recurring 4
mr4_qb = QuestionnaireBank(name='metastatic_recurring4',
classification='recurring',
research_protocol_id=metapro_id,
recurs=[four_q_recur1, four_q_recur2],
start='{"days": 0}',
overdue='{"days": 30}',
expired='{"months": 3}')
for rank, instrument in enumerate(metastatic_4):
q = Questionnaire.find_by_name(name=instrument)
qbq = QuestionnaireBankQuestionnaire(questionnaire=q, rank=rank)
mr4_qb.questionnaires.append(qbq)
# Metastatic recurring 6
mr6_qb = QuestionnaireBank(name='metastatic_recurring6',
classification='recurring',
research_protocol_id=metapro_id,
recurs=[six_q_recur],
start='{"days": 0}',
overdue='{"days": 30}',
expired='{"months": 3}')
for rank, instrument in enumerate(metastatic_6):
q = Questionnaire.find_by_name(name=instrument)
qbq = QuestionnaireBankQuestionnaire(questionnaire=q, rank=rank)
mr6_qb.questionnaires.append(qbq)
with SessionScope(db):
db.session.add(l_qb)
db.session.add(mb_qb)
db.session.add(mi_qb)
db.session.add(mr3_qb)
db.session.add(mr4_qb)
db.session.add(mr6_qb)
db.session.commit()
