def test():
com = Common()
print('------- start test -------')
method = 'GET'
url = com.get_customer_lims_ip() + 'welcome'
headers = {}
fields = {}
print(url)
print('------- issue the request -------')
r = com.http.request(method=method,
url=url,
headers=headers,
fields=fields,
retries=False,
timeout=120.0)
print('------- response is here -------')
print(type(r))
assert r.status == 200, "response has bad status"
jdata = json.loads(r.data.decode('utf-8'))
message = jdata['message']
assert message == 'welcome'
print('------- test done --------')
def test():
com = Common()
print('------- start test -------')
method = 'GET'
url = com.get_customer_lims_ip() + 'smtolims/postAssayStatus'
headers = {}
fields = {}
print(url)
print('------- issue the request -------')
r = com.http.request(method=method,
url=url,
headers=headers,
fields=fields,
retries=False,
timeout=120.0)
print('------- response is here -------')
assert r.status == 200, "response has bad status"
jdata = json.loads(r.data.decode('utf-8'))
print('---------------')
for x in jdata:
print(x)
print('------- test done --------')
def test():
com = Common()
print('------- start test -------')
method = 'GET'
url = com.get_cm_ip() + 'health/live'
# url = com.CM_IP
headers = {}
fields = {}
print('------- issue the request -------')
r = com.http.request(method=method,
url=url,
headers=headers,
fields=fields,
retries=False,
timeout=120.0)
print('------- response is here -------')
print('r.headers = {}'.format(r.headers))
print('r.status = {}'.format(r.status))
assert r.status == 200, "response has bad status"
print('------- test done --------')
def test():
com = Common()
print('------- start the test -------')
data = com.sm_retrieve_get_test_list(1)
# the test checks to confirm at least one "40" and one "41" assay
# these are presumed started by earlier tests
found40 = False
found41 = False
for n, row in data.items():
lims_id = row['lims_id']
serial_number = row['serial_number']
if lims_id[0:2] == '40':
found40 = True
print('------- found LIMS_ID {} serial number {}'.format(
lims_id, serial_number))
if lims_id[0:2] == '41':
found41 = True
print('------- found LIMS_ID {} serial number {}'.format(
lims_id, serial_number))
assert found40, 'the test was expecting an assay with LIMS_ID 40xxxxxx and did not find it'
assert found41, 'the test was expecting an assay with LIMS_ID 41xxxxxx and did not find it'
print('------- test is done -------')
def test():
com = Common()
print('------- start the test -------')
com.sm_home_load(sm_number=1)
print('------- test is done -------')
def test():
com = Common()
print('------- start the test -------')
data = com.sm_approve_get_test_list(1)
for n, row in data.items():
lims_id = row['lims_id']
serial_number = row['serial_number']
if lims_id[0:2] == '40':
print(
'------- using SM User interface to approve assay: LIMS_ID {} serial num {}'
.format(lims_id, serial_number))
com.sm_approve_approve_test_by_serial_number_or_lims_id(
sm_number=1,
by="lims_id",
serial_number_or_lims_id=lims_id,
test_comment=com.get_random_approve_comment(),
oos_comment=com.get_random_approve_comment(),
general_comment=com.get_random_approve_comment(),
mold_count=com.get_random_approve_mold_count())
print('------- test is done -------')
def test():
com = Common()
print('------- start the test -------')
primary_ids = com.order_using_lims_web_api("case_0_lims_id", 1)
print(primary_ids)
##time.sleep(10)
com.cancel_from_primary_ids(primary_ids)
print('------- test is done -------')
def test():
com = Common()
print('------- start the test -------')
assert False, 'this test fails due to AZU 2186: order using only serial number (no LIMS_ID) is rejected'
primary_ids = com.order_using_lims_web_api("case_2_serial_number", 5)
print(primary_ids)
##time.sleep(10)
com.cancel_from_primary_ids(primary_ids)
print('------- test is done -------')
def test():
com = Common()
print('------- start the test -------')
primary_ids = com.order_using_lims_web_api(
'case_91_lims_id_plus_serial_number', 2)
print(primary_ids)
time.sleep(5)
com.cancel_from_primary_ids(primary_ids)
print('------- test is done -------')
def test():
com = Common()
print('------- start test -------')
token = com.get_auth_token()
# check the auth token is the right length
assert len(token) == com.AUTH_TOKEN_EXPECTED_LENGTH_TO_CM, 'auth token length: expected {}, observed {}'.format(
com.AUTH_TOKEN_EXPECTED_LENGTH_TO_CM,
len(token))
print('------- test done --------')
def test():
com = Common()
print('------- start the test -------')
primary_ids = com.order_using_lims_web_api(
'case_91_lims_id_plus_serial_number', 2)
print(primary_ids)
# time.sleep(5)
# print('------- load -------')
# com.sm_home_load(sm_number=1)
print('------- test is done -------')
def test():
com = Common()
print('------- start the test -------')
tries_remaining = 30
while tries_remaining > 0:
data = com.sm_home_get_test_list(1)
# the test checks to confirm at least one "40" and one "41" assay
# these are presumed started by earlier tests
found40 = False
found41 = False
found42 = False
for n, row in data.items():
lims_id = row['lims_id']
serial_number = row['serial_number']
# workaround in case we don't get complete status from UI... zona
if 'status' in row:
if row['status'] == 'Ordered' and lims_id[0:2] == '40':
found40 = True
print('------- found LIMS_ID {} serial number {}'.format(
lims_id, serial_number))
if row['status'] == 'Ordered' and lims_id[0:2] == '41':
found41 = True
print('------- found LIMS_ID {} serial number {}'.format(
lims_id, serial_number))
if row['status'] == 'Ordered' and lims_id[0:2] == '42':
found42 = True
print('------- found LIMS_ID {} serial number {}'.format(
lims_id, serial_number))
if found40 and found41 and found42:
break
else:
tries_remaining -= 1
print('------- waiting for ordered... 40={} 41={} 42={} -------'.
format(found40, found41, found42))
time.sleep(1)
assert found40, 'the test was expecting an assay with LIMS_ID 40xxxxxx and did not find it'
assert found41, 'the test was expecting an assay with LIMS_ID 41xxxxxx and did not find it'
assert found42, 'the test was expecting an assay with LIMS_ID 42xxxxxx and did not find it'
print('------- test is done -------')
def test():
com = Common()
print('------- start the test -------')
assert False, "design does not support LIMS approve (receipt)"
print('------- test is done -------')
def test():
com = Common()
print('------- start the test -------')
tries_remaining = 30
while tries_remaining > 0:
data = com.sm_home_get_test_list(1)
done = com.no_assays_in_any_of_the_following_states(
actual_states=data,
unacceptable_states=['Ordered'])
if done:
break
else:
tries_remaining-=1
print('------- one or more assays with status=[Ordered]. Will wait. tries_remaining={} -------'.format(tries_remaining))
time.sleep(1)
assert tries_remaining > 0, "timeout waiting for assay status"
print('------- test is done -------')
def test():
com = Common()
print('------- get the token -------')
token_raw = com.get_auth_token()
print('------- create the LIMS order request -------')
method = 'POST'
url = com.get_cm_ip() + 'lims/postOrder'
instr_id = com.get_sm_inst_id(1)
lims_id = com.get_unique_lims_id()
serial_number = ""
lot_batch = ""
sample_id = ""
mm = "mm10000"
aa = "aa"
hr = "hr"
headers = {
'accept': 'application/json',
'Content-Type': 'application/json',
'Authorization': token_raw,
}
fields = {}
body_raw = {
"instr_id": instr_id,
"lims_id": lims_id,
"serial_number": serial_number,
"sample_id": sample_id,
"lot_batch_id": lot_batch,
"method_name": mm,
"handling_rule_name": hr,
"action_alert_level_name": aa,
"aal_cfu_threshold_alert": '',
"aal_cfu_threshold_action": '',
"aal_cfu_threshold_specification": '',
"aal_cfu_threshold_pass": '',
"comment": com.get_random_comment_order(),
}
print('--------------body raw-----------------')
print(body_raw)
body_encoded = json.dumps(body_raw).encode('utf-8')
print('------- issue the LIMS order request to CM -------')
r = com.http.request(
method=method,
url=url,
headers=headers,
fields=fields,
body=body_encoded,
retries=False,
timeout=120.0)
print('------- response from CM is here -------')
print('r.headers =\n{}'.format(r.headers))
print('r.status =\n{}'.format(r.status))
print('r.data =\n{}'.format(r.data))
assert r.status == 200, "response has bad status: expected 200 observed {}".format(r.status)
print('------- test done --------')
def test():
com = Common()
print('------- get the token -------')
token_raw = com.get_auth_token()
print('------- create the LIMS order request -------')
method = 'POST'
url = com.get_cm_ip() + 'lims/postOrder'
instr_id = com.get_sm_inst_id(1)
lims_id = com.get_unique_lims_id()
serial_number = ""
lot_batch = ""
sample_list = [
'', ''
] # note - this is the error case - multiple tests ordered using same LIMS_ID and no sample - first should be accepted second should be rejected
mm = "mm10000"
aa = "aa"
hr = "hr"
loop_num = 0
for sample_id in sample_list:
# junky sleep so can figure out the SM logfiles which loop it is
loop_num += 1
import time
time.sleep(3)
headers = {
'accept': 'application/json',
'Content-Type': 'application/json',
'Authorization': token_raw,
}
fields = {}
body_raw = {
"instr_id": instr_id,
"lims_id": lims_id,
"serial_number": serial_number,
"sample_id": sample_id,
"lot_batch_id": lot_batch,
"method_name": mm,
"handling_rule_name": hr,
"action_alert_level_name": aa,
"aal_cfu_threshold_alert": '',
"aal_cfu_threshold_action": '',
"aal_cfu_threshold_specification": '',
"aal_cfu_threshold_pass": '',
"comment": com.get_random_comment_order(),
}
print('--------------body raw-----------------')
print(body_raw)
body_encoded = json.dumps(body_raw).encode('utf-8')
print('------- issue the LIMS order request to CM -------')
r = com.http.request(method=method,
url=url,
headers=headers,
fields=fields,
body=body_encoded,
retries=False,
timeout=120.0)
print('------- response from CM is here -------')
print('r.headers =\n{}'.format(r.headers))
print('r.status =\n{}'.format(r.status))
print('r.data =\n{}'.format(r.data))
if loop_num == 1:
assert r.status == 200, "response has bad status: expected 200 observed {}".format(
r.status)
if loop_num == 2:
assert r.status != 200, "response has GOOD status: expected !200 observed {}".format(
r.status)
print('------- test done --------')
def test():
com = Common()
print('------- get the token -------')
token = com.get_auth_token()
print('------- create the LIMS cancel request -------')
data = com.sm_retrieve_get_test_list(1)
for n, row in data.items():
lims_id = row['lims_id']
serial_number = row['serial_number']
if lims_id[0:2] == '42':
print('------- using LIMS Cancel command to cancel assay: LIMS_ID {} serial num {}'.format(lims_id, serial_number))
method = 'POST'
url = com.get_cm_ip() + 'lims/postCancel'
headers = {
'accept': 'application/json',
'Content-Type': 'application/json',
'Authorization': token,
}
fields = {}
body_raw = {
"instr_id": com.get_sm_inst_id(1),
"lims_id": lims_id,
"serial_number": '',
"sample_id": '',
"lot_batch_id": '',
}
body_encoded = json.dumps(body_raw).encode('utf-8')
print('------- issue the LIMS cancel request to CM -------')
r = com.http.request(
method=method,
url=url,
headers=headers,
fields=fields,
body=body_encoded,
retries=False,
timeout=120.0)
print('------- response from CM is here -------')
assert r.status == 200, "response has bad status"
print('------- test done --------')
print('------- test is done -------')
def test():
com = Common()
print('------- get the token -------')
token_raw = com.get_auth_token()
[y, token_value] = token_raw.split()
print('------- create the LIMS order request -------')
method = 'POST'
url = com.get_cm_ip() + 'lims/postOrder'
# this test will create three orders with preface of [40,41,42] for LIMS_ID and SERIAL_NUMBER
# the three tests will be later cancelled by later tests
for prefix in ['40', '41', '42']:
lims_id_generic = com.get_unique_lims_id()
lims_id_specific = prefix + lims_id_generic[2:]
# serial_number_generic = com.get_unique_serial_number_em_bb()
# serial_number_specific = serial_number_generic[0] + prefix + serial_number_generic[3:]
serial_number_specific = ""
# sample_id = "s10000" # hard code sample id
sample_id = ""
# lot_batch_id = "B11"
lot_batch_id = ""
headers = {
'accept': 'application/json',
'Content-Type': 'application/json',
'Authorization': token_raw,
}
fields = {}
body_raw = {
"instr_id": com.get_sm_inst_id(1),
"lims_id": lims_id_specific,
"serial_number": serial_number_specific,
"sample_id": sample_id,
"lot_batch_id": lot_batch_id,
"method_name": '',
"handling_rule_name": '',
"action_alert_level_name": '',
"aal_cfu_threshold_alert": '',
"aal_cfu_threshold_action": '',
"aal_cfu_threshold_specification": '',
"aal_cfu_threshold_pass": '',
"comment": com.get_random_comment_order(),
}
print('--------------body raw-----------------')
print(body_raw)
body_encoded = json.dumps(body_raw).encode('utf-8')
print('------- issue the LIMS order request to CM -------')
r = com.http.request(method=method,
url=url,
headers=headers,
fields=fields,
body=body_encoded,
retries=False,
timeout=120.0)
print('------- response from CM is here -------')
print('r.headers =\n{}'.format(r.headers))
print('r.status =\n{}'.format(r.status))
print('r.data =\n{}'.format(r.data))
assert r.status == 200, "response has bad status: expected 200 observed {}".format(
r.status)
print('------- test done --------')
def test():
com = Common()
print('------- start test -------')
method = 'POST'
url = com.get_cm_ip() + 'auth/login'
headers = {
'Content-Type': 'application/json',
}
password_cleartext = 'test@123'
#md5_obj = hashlib.md5(password_cleartext)
#password_md5 = md5_obj.hexdigest()
#password_md5 = md5_obj.digest()
fields = {}
body_raw = {
'userName': '******',
'password': password_cleartext,
}
body_encoded = json.dumps(body_raw).encode('utf-8')
print('------- the request is --------')
print('method={}'.format(method))
print('url={}'.format(url))
print('headers={}'.format(headers))
print('fields={}'.format(fields))
print('body={}'.format(body_encoded))
print('------- issue the request -------')
r = com.http.request(
method=method,
url=url,
headers=headers,
fields=fields,
body=body_encoded,
retries=False,
timeout=120.0)
print('------- response is here -------')
print('r.headers = {}'.format(r.headers))
print('r.status = {}'.format(r.status))
print('r.data = {}'.format(r.data))
# check response status == 200
assert r.status == 200, "response has bad status"
# check the auth token is the right length
jdata = json.loads(r.data.decode('utf-8'))
token = jdata['authToken']
print("------------here")
print(type(token))
assert len(token) == com.AUTH_TOKEN_EXPECTED_LENGTH_FROM_CM, 'auth token length: expected {}, observed {}'.format(
com.AUTH_TOKEN_EXPECTED_LENGTH_FROM_CM,
len(token))
bearer_token = 'Bearer ' + token
print('----------')
print(bearer_token)
print('------- test done --------')
