def test():
com = Common()
print('------- start the test -------')
data = com.sm_retrieve_get_test_list(1)
for n, row in data.items():
lims_id = row['lims_id']
serial_number = row['serial_number']
if serial_number[1:3] == '41':
print('------- using SM User interface to cancel assay: LIMS_ID {} serial num {}'.format(lims_id, serial_number))
com.sm_retrieve_cancel_test_by_serial_number_or_lims_id(
sm_number=1,
by="serial_number",
serial_number_or_lims_id=serial_number,
test_comment=com.get_random_approve_comment(),
oos_comment=com.get_random_approve_comment(),
general_comment=com.get_random_approve_comment(),
mold_count=com.get_random_approve_mold_count())
print('------- test is done -------')
def test():
com = Common()
print('------- start the test -------')
data = com.sm_retrieve_get_test_list(1)
# the test checks to confirm at least one "40" and one "41" assay
# these are presumed started by earlier tests
found40 = False
found41 = False
for n, row in data.items():
lims_id = row['lims_id']
serial_number = row['serial_number']
if lims_id[0:2] == '40':
found40 = True
print('------- found LIMS_ID {} serial number {}'.format(
lims_id, serial_number))
if lims_id[0:2] == '41':
found41 = True
print('------- found LIMS_ID {} serial number {}'.format(
lims_id, serial_number))
assert found40, 'the test was expecting an assay with LIMS_ID 40xxxxxx and did not find it'
assert found41, 'the test was expecting an assay with LIMS_ID 41xxxxxx and did not find it'
print('------- test is done -------')
def test():
com = Common()
print('------- get the token -------')
token = com.get_auth_token()
print('------- create the LIMS cancel request -------')
data = com.sm_retrieve_get_test_list(1)
for n, row in data.items():
lims_id = row['lims_id']
serial_number = row['serial_number']
if lims_id[0:2] == '42':
print('------- using LIMS Cancel command to cancel assay: LIMS_ID {} serial num {}'.format(lims_id, serial_number))
method = 'POST'
url = com.get_cm_ip() + 'lims/postCancel'
headers = {
'accept': 'application/json',
'Content-Type': 'application/json',
'Authorization': token,
}
fields = {}
body_raw = {
"instr_id": com.get_sm_inst_id(1),
"lims_id": lims_id,
"serial_number": '',
"sample_id": '',
"lot_batch_id": '',
}
body_encoded = json.dumps(body_raw).encode('utf-8')
print('------- issue the LIMS cancel request to CM -------')
r = com.http.request(
method=method,
url=url,
headers=headers,
fields=fields,
body=body_encoded,
retries=False,
timeout=120.0)
print('------- response from CM is here -------')
assert r.status == 200, "response has bad status"
print('------- test done --------')
print('------- test is done -------')
