def test_peptide_mutation_interval_no_overlap_after():
with assert_raises(ValueError):
peptide_mutation_interval(
peptide_start_in_protein=10,
peptide_length=9,
mutation_start_in_protein=25,
mutation_end_in_protein=26)
def test_peptide_mutation_interval_deletion():
start, end = peptide_mutation_interval(peptide_start_in_protein=10,
peptide_length=9,
mutation_start_in_protein=15,
mutation_end_in_protein=15)
eq_(start, 5)
eq_(end, 5)
def test_peptide_mutation_interval_middle():
start, end = peptide_mutation_interval(peptide_start_in_protein=10,
peptide_length=9,
mutation_start_in_protein=11,
mutation_end_in_protein=12)
eq_(start, 1)
eq_(end, 2)
def test_peptide_mutation_interval_end():
start, end = peptide_mutation_interval(peptide_start_in_protein=10,
peptide_length=9,
mutation_start_in_protein=18,
mutation_end_in_protein=20)
eq_(start, 8)
eq_(end, 9)