def initUI(self):
self.parent.title("Listbox + Scale + ChkBtn")
self.pack(fill=BOTH, expand=1)
acts = ['Scarlett Johansson', 'Rachel Weiss',
'Natalie Portman', 'Jessica Alba']
lb = Listbox(self)
for i in acts:
lb.insert(END, i)
lb.bind("<<ListboxSelect>>", self.onSelect)
lb.place(x=20, y=20)
self.var = StringVar()
self.label = Label(self, text=0, textvariable=self.var)
self.label.place(x=20, y=190)
scale = Scale(self, from_=0, to=100, command=self.onScale)
scale.place(x=20, y=220)
self.var_scale = IntVar()
self.label_scale = Label(self, text=0, textvariable=self.var_scale)
self.label_scale.place(x=180, y=220)
self.var_chk = IntVar()
cb = Checkbutton(self, text="Test", variable=self.var_chk,
command=self.onClick)
cb.select()
cb.place(x=220, y=60)
def initUI(self):
self.parent.title("Scale")
self.style = Style()
self.style.theme_use("default")
self.pack(fill=BOTH, expand=1)
scale = Scale(self, from_=0, to=100, command=self.onScale)
scale.place(x=20, y=20)
self.var = IntVar()
self.label = Label(self, text=0, textvariable=self.var)
self.label.place(x=130, y=70)
def initUI(self):
self.parent.title("Scale")
self.style = Style()
self.style.theme_use("default")
self.pack(fill=BOTH, expand=1)
scale = Scale(self, from_=0, to=100,
command=self.onScale)
scale.place(x=20, y=20)
self.var = IntVar()
self.label = Label(self, text=0, textvariable=self.var)
self.label.place(x=130, y=70)
def init_ui(self):
self.parent.title('Fake Device')
self.style = Style()
self.style.theme_use('default')
self.pack(fill=BOTH, expand=1)
x_scale = Scale(self,
from_=self.MIN_X,
to=self.MAX_X,
command=self.on_scale_x)
x_scale.place(x=0, y=0)
y_scale = Scale(self,
from_=self.MIN_Y,
to=self.MAX_Y,
command=self.on_scale_y)
y_scale.place(x=0, y=20)
z_scale = Scale(self,
from_=self.MIN_Z,
to=self.MAX_Z,
command=self.on_scale_z)
z_scale.place(x=0, y=40)
angle_scale = Scale(self,
from_=0,
to=math.pi / 2,
command=self.on_scale_angle)
angle_scale.place(x=0, y=80)
self.x_var = IntVar()
self.x_label = Label(self, text=0, textvariable=self.x_var)
self.x_label.place(x=100, y=0)
self.y_var = IntVar()
self.y_label = Label(self, text=0, textvariable=self.y_var)
self.y_label.place(x=100, y=20)
self.z_var = IntVar()
self.z_label = Label(self, text=0, textvariable=self.z_var)
self.z_label.place(x=100, y=40)
self.angle_var = DoubleVar()
self.angle_label = Label(self, text=0, textvariable=self.angle_var)
self.angle_label.place(x=100, y=80)
self.button = Button(self, text='test', command=self.on_button)
self.button.place(x=0, y=100)
def init_ui(self):
self.parent.title('Fake Device')
self.style = Style()
self.style.theme_use('default')
self.pack(fill=BOTH, expand=1)
x_scale = Scale(self, from_=self.MIN_X, to=self.MAX_X, command=self.on_scale_x)
x_scale.place(x=0, y=0)
y_scale = Scale(self, from_=self.MIN_Y, to=self.MAX_Y, command=self.on_scale_y)
y_scale.place(x=0, y=20)
z_scale = Scale(self, from_=self.MIN_Z, to=self.MAX_Z, command=self.on_scale_z)
z_scale.place(x=0, y=40)
angle_scale = Scale(self, from_=0, to=math.pi/2, command=self.on_scale_angle)
angle_scale.place(x=0, y=80)
self.x_var = IntVar()
self.x_label = Label(self, text=0, textvariable=self.x_var)
self.x_label.place(x=100, y=0)
self.y_var = IntVar()
self.y_label = Label(self, text=0, textvariable=self.y_var)
self.y_label.place(x=100, y=20)
self.z_var = IntVar()
self.z_label = Label(self, text=0, textvariable=self.z_var)
self.z_label.place(x=100, y=40)
self.angle_var = DoubleVar()
self.angle_label = Label(self, text=0, textvariable=self.angle_var)
self.angle_label.place(x=100, y=80)
self.button = Button(self, text='test', command=self.on_button)
self.button.place(x=0, y=100)
class Example(Frame):
global niftiName
global niftiImg
global rows
global cols
global slices
global thisImg1
global thisImg2
global thisImg3
def __init__(self, parent):
self.rowVal = 0
self.colVal = 0
self.sliceVal = 0
Frame.__init__(self, parent)
self.parent = parent
self.initUI()
if len(sys.argv) > 1:
self.niftiName = sys.argv[
1] #'T2Wt_NonContactSport_Day8_03150001_05_11_16.nii.gz'
self.loadNifti()
else:
self.niftiName = 'T2Wt_NonContactSport_Day8_03150001_05_11_16.nii.gz'
self.loadNifti()
self.roiIdx = 0
def initUI(self):
self.parent.title("Quit button")
self.style = Style()
self.style.theme_use("default")
self.pack(fill=BOTH, expand=1)
#first fig
fig1 = matplotlib.figure.Figure()
ax1 = fig1.add_subplot(111)
self.thisImg1 = np.eye(256)
self.fig1Drawing = ax1.imshow(self.thisImg1)
self.canvas1 = FigureCanvasTkAgg(fig1, master=self.parent)
self.canvas1.show()
self.canvas1.get_tk_widget().place(relx=0, rely=0,\
relheight=0.7, \
relwidth=0.3)
#second fig
fig2 = matplotlib.figure.Figure()
ax2 = fig2.add_subplot(111)
self.thisImg2 = np.eye(256)
self.fig2Drawing = ax2.imshow(self.thisImg2)
self.canvas2 = FigureCanvasTkAgg(fig2, master=self.parent)
self.canvas2.show()
self.canvas2.get_tk_widget().place(relx=0.33, rely=0, \
relheight=0.7, \
relwidth=0.3)
#Thrid fig
fig3 = matplotlib.figure.Figure()
ax3 = fig3.add_subplot(111)
self.thisImg3 = np.eye(256)
self.fig3Drawing = ax3.imshow(self.thisImg3)
self.canvas3 = FigureCanvasTkAgg(fig3, master=self.parent)
self.canvas3.show()
self.canvas3.get_tk_widget().place(relx=0.66, rely=0, \
relheight=0.7, \
relwidth=0.3)
cid1 = self.canvas1.mpl_connect('button_press_event', self.firstUpdate)
cid2 = self.canvas2.mpl_connect('button_press_event',
self.secondUpdate)
cid3 = self.canvas3.mpl_connect('button_press_event', self.thirdUpdate)
cid4 = self.canvas1.mpl_connect('key_press_event', self.writeRoi2)
cid4 = self.canvas2.mpl_connect('key_press_event', self.writeRoi2)
cid5 = self.canvas3.mpl_connect('key_press_event', self.writeRoi2)
#Make the sliders
self.rowSlider = Scale(self, \
command=self.updateRow, \
orient=tk.HORIZONTAL, \
from_=0, \
to=500)
self.rowSlider.place(relx=0.8, rely=0.8)
self.colSlider = Scale(self, \
command=self.updateCol, \
orient=tk.HORIZONTAL, \
from_=0, \
to=500)
self.colSlider.place(relx=.4, rely=0.8)
self.sliceSlider = Scale(self, \
command=self.updateSlice, \
orient=tk.HORIZONTAL, \
from_=0, \
to=500)
self.sliceSlider.place(relx=0.0, rely=0.8)
openButton = Button(self, text="Open", command=self.pickFile)
openButton.place(relx=0, rely=.9)
loadButton = Button(self, text="Load", command=self.loadNifti)
loadButton.place(relx=.4, rely=.9)
quitButton = Button(self, text="Quit", command=self.quit)
quitButton.place(relx=.8, rely=.9)
def pickFile(self):
filename = askopenfilename()
print filename
self.niftiName = filename
def loadNifti(self):
self.niftiImg = nibabel.load(self.niftiName)
self.updateImage()
def updateImage(self):
#print "updateImage started..."
self.dataArr = self.niftiImg.get_data()
thisArr1Max = np.max(self.dataArr[::, ::, self.sliceVal])
if thisArr1Max == 0:
thisArr1Max = 1
thisArr1 = self.dataArr[::,::,self.sliceVal].astype(np.float) \
/ thisArr1Max
thisArr1Max = np.max(self.dataArr[::, self.colVal, ::])
if thisArr1Max == 0:
thisArr1Max = 1
thisArr2 = self.dataArr[::,self.colVal,::].astype(np.float) \
/ thisArr1Max
thisArr1Max = np.max(self.dataArr[self.rowVal, ::, ::])
if thisArr1Max == 0:
thisArr1Max = 1
thisArr3 = self.dataArr[self.rowVal,::,::].astype(np.float) \
/ thisArr1Max
self.fig1Drawing.set_data(thisArr1)
self.fig2Drawing.set_data(thisArr2)
self.fig3Drawing.set_data(thisArr3)
self.canvas1.draw()
self.canvas2.draw()
self.canvas3.draw()
#print "updateImage done!"
def updateRow(self, v1):
sliderVal = float(v1) / 500. #self.rowSlider.get()
newRow = int(np.round(np.shape(self.dataArr)[0] * sliderVal))
self.rowVal = newRow
#print "newRow is %i"%(newRow,)
self.updateImage()
def updateCol(self, v1):
sliderVal = float(v1) / 500. #self.colSlider.get()
newCol = int(np.round(np.shape(self.dataArr)[1] * sliderVal))
self.colVal = newCol
#print "newCol is %i"%(newCol,)
self.updateImage()
def updateSlice(self, v1):
sliderVal = float(v1) / 500. #self.sliceSlider.get()
newSlice = int(np.round(np.shape(self.dataArr)[2] * sliderVal))
self.sliceVal = newSlice
#print "newSlice is %i"%(newSlice,)
self.updateImage()
def firstUpdate(self, event):
#print 'button=%d, x=%d, y=%d, xdata=%f, ydata=%f' % \
# (event.button, event.x, event.y, event.xdata, event.ydata)
#print np.shape(self.dataArr)
newCol = event.xdata / 256.0 * np.shape(self.dataArr)[1]
newRow = event.ydata / 256.0 * np.shape(self.dataArr)[0]
self.rowVal = int(np.round(newRow))
self.colVal = int(np.round(newCol))
#print 'rowVal=%i'%(self.rowVal)
#print 'colVal=%i'%(self.colVal)
self.updateImage()
def secondUpdate(self, event):
#print 'button=%d, x=%d, y=%d, xdata=%f, ydata=%f' % \
# (event.button, event.x, event.y, event.xdata, event.ydata)
#print np.shape(self.dataArr)
newSlice = event.xdata / 256.0 * np.shape(self.dataArr)[2]
newRow = event.ydata / 256.0 * np.shape(self.dataArr)[0]
self.rowVal = int(np.round(newRow))
self.sliceVal = int(np.round(newSlice))
self.updateImage()
def thirdUpdate(self, event):
#print 'button=%d, x=%d, y=%d, xdata=%f, ydata=%f' % \
# (event.button, event.x, event.y, event.xdata, event.ydata)
#print np.shape(self.dataArr)
newSlice = event.xdata / 256.0 * np.shape(self.dataArr)[2]
newCol = event.ydata / 256.0 * np.shape(self.dataArr)[1]
self.sliceVal = int(np.round(newSlice))
self.colVal = int(np.round(newCol))
self.updateImage()
def writeRoi(self, event):
print 'key=%s' % (event.key)
halfWidth = 16
sys.stdout.flush()
if event.key is 'w':
startRow = self.rowVal - halfWidth
endRow = self.rowVal + halfWidth - 1
startCol = self.colVal - halfWidth
endCol = self.colVal + halfWidth - 1
startSlice = self.sliceVal - halfWidth
endSlice = self.sliceVal + halfWidth - 1
if startRow < 0:
startRow = 0
print "Truncated start row"
if endRow >= np.shape(self.dataArr)[0]:
endRow = np.shape(self.dataArr)[0] - 1
print "Truncated end row"
if startCol < 0:
startCol = 0
print "Truncated start col"
if endCol >= np.shape(self.dataArr)[1]:
endCol = np.shape(self.dataArr)[1] - 1
print "Truncated end col"
if startSlice < 0:
startSlice = 0
print "Truncated start slice"
if endSlice >= np.shape(self.dataArr)[2]:
endSlice = np.shape(self.dataArr)[2] - 1
print "Truncated end slice"
tmpRoi = self.dataArr[startRow:endRow:, startCol:endCol:,
startSlice:endSlice:]
self.cleanNiftiName = self.niftiName.replace('/', '_')
fileName = 'roi_%i_%s_.pic' % (self.roiIdx, self.cleanNiftiName)
self.roiIdx += 1
np.save(fileName, tmpRoi)
print "Saved %s" % (fileName, )
def writeRoi2(self, event):
print 'key=%s' % (event.key)
halfWidth = 16
randROIs = 10
self.rows = np.shape(self.dataArr)[0]
self.cols = np.shape(self.dataArr)[1]
self.slices = np.shape(self.dataArr)[2]
eyeOffsets = [-5, 0, 5]
sys.stdout.flush()
if event.key is 'w':
for rowOffset in eyeOffsets:
for colOffset in eyeOffsets:
for sliceOffset in eyeOffsets:
for reverseIdx in xrange(0, 4, 1):
startRow = self.rowVal - halfWidth + rowOffset
endRow = self.rowVal + halfWidth - 1 + rowOffset
startCol = self.colVal - halfWidth + colOffset
endCol = self.colVal + halfWidth - 1 + colOffset
startSlice = self.sliceVal - halfWidth + sliceOffset
endSlice = self.sliceVal + halfWidth - 1 + sliceOffset
if startRow < 0:
startRow = 0
print "Truncated start row"
if endRow >= np.shape(self.dataArr)[0]:
endRow = np.shape(self.dataArr)[0] - 1
print "Truncated end row"
if startCol < 0:
startCol = 0
print "Truncated start col"
if endCol >= np.shape(self.dataArr)[1]:
endCol = np.shape(self.dataArr)[1] - 1
print "Truncated end col"
if startSlice < 0:
startSlice = 0
print "Truncated start slice"
if endSlice >= np.shape(self.dataArr)[2]:
endSlice = np.shape(self.dataArr)[2] - 1
print "Truncated end slice"
tmpRoi = self.dataArr[startRow:endRow:,
startCol:endCol:,
startSlice:endSlice:]
if reverseIdx > 0:
tmpRoi = np.flip(tmpRoi, reverseIdx - 1)
self.cleanNiftiName = self.niftiName.replace(
'/', '_')
fileName = 'roi_%i_anat_%s_.pic' % (
self.roiIdx, self.cleanNiftiName)
self.roiIdx += 1
np.save(fileName, tmpRoi)
print "Saved %s" % (fileName, )
#Make the random ROIs
randCentRow = self.rowVal
randCentCol = self.colVal
randCentSlice = self.sliceVal
while np.abs(randCentRow -
self.rowVal) < halfWidth:
randCentRow = np.random.random_integers(
0, self.rows - 2 * halfWidth) + halfWidth
randStartRow = randCentRow - halfWidth
randEndRow = randStartRow + 2 * halfWidth
randStartCol = np.random.random_integers(
0, self.cols - 2 * halfWidth)
while np.abs(randCentCol -
self.colVal) < halfWidth:
randCentCol = np.random.random_integers(
0, self.cols - 2 * halfWidth) + halfWidth
randStartCol = randCentCol - halfWidth
randEndCol = randStartCol + 2 * halfWidth
while np.abs(randCentSlice -
self.sliceVal) < halfWidth:
randCentSlice = np.random.random_integers(
0, self.slices - 2 * halfWidth) + halfWidth
randStartSlice = randCentSlice - halfWidth
randEndSlice = randStartSlice + 2 * halfWidth
tmpRoi = self.dataArr[randStartRow:randEndRow:, \
randStartCol:randEndCol:, \
randStartSlice:randEndSlice:]
if reverseIdx > 0:
tmpRoi = np.flip(tmpRoi, reverseIdx - 1)
fileName = 'roi_%i_rand_%s_.pic' % (
self.roiIdx, self.cleanNiftiName)
self.roiIdx += 1
np.save(fileName, tmpRoi)
print "Saved %s" % (fileName, )
