def test_ensure_apiname():
cases = [
(('Joan', 'joan.cpp'),
apiname('Joan', ('joan.cpp', ), 'joan', 'Joan', (), ('joan.py', ),
'c++')),
(('Joan', ['joan.h', 'joan.cpp'], 'pyjoan'),
apiname('Joan', ('joan.h', 'joan.cpp'), 'pyjoan', 'Joan',
('joan.h', ), ('joan.py', ), 'c++')),
(('Joan', ('joan.h', 'j*.c'), 'pyjoan', 'PyJoan'),
apiname('Joan', ('joan.h', 'joan.c'), 'pyjoan', 'PyJoan',
('joan.h', ), ('joan.py', ), 'c')),
([
'Joan', 'joan*', 'pyjoan', 'PyJoan', NotSpecified, ('phone.py', ),
'python'
],
apiname('Joan', ('joan.c', 'joan.cpp', 'joan.h', 'joan.py'), 'pyjoan',
'PyJoan', ('joan.h', ), ('phone.py', ), 'python')),
({
'srcname': 'Joan',
'srcfiles': 'joan.h',
'language': 'C'
},
apiname('Joan', ('joan.h', ), 'joan', 'Joan', ('joan.h', ),
('joan.py', ), 'c')),
(apiname('Joan', 'joan.cpp', 'pyjoan', 'PyJoan', None, ('loan.py', ),
None),
apiname('Joan', ('joan.cpp', ), 'pyjoan', 'PyJoan', (), (), 'c++')),
(apiname('Joan', ('joan.cpp', ), 'pyjoan', NotSpecified, ('hdf5.h', ),
(), NotSpecified),
apiname('Joan', ('joan.cpp', ), 'pyjoan', 'Joan', ('hdf5.h', ), (),
'c++')),
]
for x, exp in cases:
yield check_ensure_apiname, x, exp
def test_ensure_apiname():
cases = [
(('Joan', 'joan'), apiname('Joan', 'joan', 'joan', 'Joan')),
(('Joan', 'joan', 'pyjoan'), apiname('Joan', 'joan', 'pyjoan', 'Joan')),
(('Joan', 'joan', 'pyjoan', 'PyJoan'),
apiname('Joan', 'joan', 'pyjoan', 'PyJoan')),
(['Joan', 'joan', 'pyjoan', 'PyJoan'],
apiname('Joan', 'joan', 'pyjoan', 'PyJoan')),
({'srcname': 'Joan', 'srcfile': 'joan'},
apiname('Joan', 'joan', 'joan', 'Joan')),
(apiname('Joan', 'joan', 'pyjoan', 'PyJoan'),
apiname('Joan', 'joan', 'pyjoan', 'PyJoan')),
(apiname('Joan', 'joan', 'pyjoan', NotSpecified),
apiname('Joan', 'joan', 'pyjoan', 'Joan')),
]
for x, exp in cases:
yield check_ensure_apiname, x, exp
def test_ensure_apiname():
cases = [
(('Joan', 'joan'), apiname('Joan', 'joan', 'joan', 'Joan')),
(('Joan', 'joan', 'pyjoan'), apiname('Joan', 'joan', 'pyjoan',
'Joan')),
(('Joan', 'joan', 'pyjoan', 'PyJoan'),
apiname('Joan', 'joan', 'pyjoan', 'PyJoan')),
(['Joan', 'joan', 'pyjoan',
'PyJoan'], apiname('Joan', 'joan', 'pyjoan', 'PyJoan')),
({
'srcname': 'Joan',
'srcfile': 'joan'
}, apiname('Joan', 'joan', 'joan', 'Joan')),
(apiname('Joan', 'joan', 'pyjoan',
'PyJoan'), apiname('Joan', 'joan', 'pyjoan', 'PyJoan')),
(apiname('Joan', 'joan', 'pyjoan',
NotSpecified), apiname('Joan', 'joan', 'pyjoan', 'Joan')),
]
for x, exp in cases:
yield check_ensure_apiname, x, exp
def test_ensure_apiname():
cases = [
(("Joan", "joan.cpp"), apiname("Joan", ("joan.cpp",), "joan", "Joan", (), ("joan.py",), "c++")),
(
("Joan", ["joan.h", "joan.cpp"], "pyjoan"),
apiname("Joan", ("joan.h", "joan.cpp"), "pyjoan", "Joan", ("joan.h",), ("joan.py",), "c++"),
),
(
("Joan", ("joan.h", "j*.c"), "pyjoan", "PyJoan"),
apiname("Joan", ("joan.h", "joan.c"), "pyjoan", "PyJoan", ("joan.h",), ("joan.py",), "c"),
),
(
["Joan", "joan*", "pyjoan", "PyJoan", NotSpecified, ("phone.py",), "python"],
apiname(
"Joan",
("joan.c", "joan.cpp", "joan.h", "joan.py"),
"pyjoan",
"PyJoan",
("joan.h",),
("phone.py",),
"python",
),
),
(
{"srcname": "Joan", "srcfiles": "joan.h", "language": "C"},
apiname("Joan", ("joan.h",), "joan", "Joan", ("joan.h",), ("joan.py",), "c"),
),
(
apiname("Joan", "joan.cpp", "pyjoan", "PyJoan", None, ("loan.py",), None),
apiname("Joan", ("joan.cpp",), "pyjoan", "PyJoan", (), (), "c++"),
),
(
apiname("Joan", ("joan.cpp",), "pyjoan", NotSpecified, ("hdf5.h",), (), NotSpecified),
apiname("Joan", ("joan.cpp",), "pyjoan", "Joan", ("hdf5.h",), (), "c++"),
),
]
for x, exp in cases:
yield check_ensure_apiname, x, exp
def test_ensure_apiname():
cases = [
(('Joan', 'joan.cpp'),
apiname('Joan', ('joan.cpp',), 'joan', 'Joan', (), ('joan.py',), 'c++')),
(('Joan', ['joan.h', 'joan.cpp'], 'pyjoan'),
apiname('Joan', ('joan.h', 'joan.cpp'), 'pyjoan', 'Joan', ('joan.h',),
('joan.py',), 'c++')),
(('Joan', ('joan.h', 'j*.c'), 'pyjoan', 'PyJoan'),
apiname('Joan', ('joan.h', 'joan.c'), 'pyjoan', 'PyJoan', ('joan.h',),
('joan.py',), 'c')),
(['Joan', 'joan*', 'pyjoan', 'PyJoan', NotSpecified, ('phone.py',), 'python'],
apiname('Joan', ('joan.c', 'joan.cpp', 'joan.h', 'joan.py'), 'pyjoan',
'PyJoan', ('joan.h',), ('phone.py',), 'python')),
({'srcname': 'Joan', 'srcfiles': 'joan.h', 'language': 'C'},
apiname('Joan', ('joan.h',), 'joan', 'Joan', ('joan.h',),
('joan.py',), 'c')),
(apiname('Joan', 'joan.cpp', 'pyjoan', 'PyJoan', None, ('loan.py',), None),
apiname('Joan', ('joan.cpp',), 'pyjoan', 'PyJoan', (), (), 'c++')),
(apiname('Joan', ('joan.cpp',), 'pyjoan', NotSpecified, ('hdf5.h',),
(), NotSpecified),
apiname('Joan', ('joan.cpp',), 'pyjoan', 'Joan', ('hdf5.h',), (), 'c++')),
]
for x, exp in cases:
yield check_ensure_apiname, x, exp
'GENERATE_LATEX': True # Could be 'YES' or True
}
doxyfile_name = './build/tally_doxyfile'
extra_types = 'extra_types' # non-default value
stlcontainers = [
('set', 'str'),
('set', 'int32'),
('map', 'str', 'str'),
('map', 'str', 'int32'),
('map', 'int32', 'str'),
('map', 'str', 'uint32'),
('map', 'uint32', 'str'),
('map', 'str', 'float64'),
('map', 'uint32', 'uint32'),
('map', 'int32', 'int32'),
('map', 'int32', 'float64'),
('map', 'int32', 'complex'),
('map', 'uint32', 'float64'),
('map', 'str', ('vector', 'float64')),
('map', 'int32', ('vector', 'float64')),
]
#stlcontainers_module = 'stlcontainers'
classes = [apiname('Tally', 'cpp/tally.*', incfiles='tally.h')]
functions = []
'xdress.extratypes')
extra_types = 'cproj_extra_types' # non-default value
_fromsrcdir = lambda x: os.path.join('src', x)
_inbasics = {
'srcfiles': _fromsrcdir('basics*'),
'incfiles': 'basics.h',
}
_indiscovery = {
'srcfiles': _fromsrcdir('discovery*'),
'incfiles': 'discovery.h',
}
variables = [
apiname('PersonID', tarbase='pybasics', **_inbasics),
apiname('*', **_indiscovery),
]
functions = [
apiname('voided', **_inbasics),
{
'srcname': 'func0',
'tarname': 'a_better_name',
'srcfiles': _fromsrcdir('basics*'),
'incfiles': 'basics.h',
},
apiname('func1', **_inbasics),
apiname('func2', **_inbasics),
apiname('func3', **_inbasics),
apiname('func4', tarbase='pybasics', **_inbasics),
plugins = ('xdress.autoall', 'xdress.pep8names', 'xdress.cythongen',
'xdress.extratypes')
_fromsrcdir = lambda x: os.path.join('src', x)
_fromgpu = {'srcfiles': _fromsrcdir('*.cu'),
'language': 'c'}
_incommon = {'srcfiles': _fromsrcdir('common*'),
'incfiles': 'common.h',
'language': 'c'
}
variables = [
apiname('*', **_incommon)
]
# stlcontainers = [
# ('vector', 'str'),
# ('set', 'uint'),
# ('map', 'int', 'float'),
# ]
# will be used later, but need to be present now
# classes = []
functions = [
apiname('constructDebruijnGraphDevice',**_fromgpu),
apiname('findComponentDevice',**_fromgpu),
apiname('encodeLmer',**_fromgpu),
apiname('encodeLmerComplement',**_fromgpu),
dtypes_module = 'dt'
stlcontainers_module = 'stlc'
_fromsrcdir = lambda x: os.path.join('src', x)
_inbasics = {'srcfiles': _fromsrcdir('basics.[ch]*'),
'incfiles': 'basics.hpp', # trick to get around cython generating *.h
'language': 'c++',
}
_indiscovery = {'srcfiles': _fromsrcdir('discovery*'),
'incfiles': 'discovery.h',
'language': 'c++',
}
variables = [
apiname('PersonID', tarbase='pybasics', **_inbasics),
apiname('*', **_indiscovery),
]
functions = [
apiname('voided', **_inbasics),
apiname('call_with_void_fp_struct', **_inbasics),
{'srcname': 'func0',
'tarname': 'a_better_name',
'incfiles': 'basics.h',
'srcfiles': _fromsrcdir('basics.[ch]*')},
apiname('func1', **_inbasics),
apiname('func2', **_inbasics),
apiname('func3', **_inbasics),
apiname('func4', tarbase='pybasics', **_inbasics),
apiname(('findmin', 'int32', 'float32',), **_inbasics),
stlcontainers_module = 'stlc'
_fromsrcdir = lambda x: os.path.join('src', x)
_inbasics = {
'srcfiles': _fromsrcdir('basics.[ch]*'),
'incfiles': 'basics.hpp', # trick to get around cython generating *.h
'language': 'c++',
}
_indiscovery = {
'srcfiles': _fromsrcdir('discovery*'),
'incfiles': 'discovery.h',
'language': 'c++',
}
variables = [
apiname('PersonID', tarbase='pybasics', **_inbasics),
apiname('*', **_indiscovery),
]
functions = [
apiname('voided', **_inbasics),
apiname('call_with_void_fp_struct', **_inbasics),
{
'srcname': 'func0',
'tarname': 'a_better_name',
'incfiles': 'basics.h',
'srcfiles': _fromsrcdir('basics.[ch]*')
},
apiname('func1', **_inbasics),
apiname('func2', **_inbasics),
apiname('func3', **_inbasics),
from xdress.utils import apiname
package = 'dag_slicer' # top-level python package name
packagedir = 'dag_slicer' # loation of the python package
#plugins = ('xdress.stlwrap', 'xdress.cythongen',
# 'xdress.autodescribe', 'xdress.autoall')
extra_types = 'xdress_extra_types'
stlcontainers = [
('vector', 'str'),
('vector', 'int'),
('vector', ('vector', 'int')),
('vector', 'float'),
('vector', ('vector', 'float')),
]
classes = [
apiname('Dag_Slicer', ['src/dag_slicer.hpp', 'src/dag_slicer.cpp'],
incfiles='dag_slicer.hpp',
language='c++'),
]
plugins = ('xdress.autoall', 'xdress.pep8names', 'xdress.cythongen',
'xdress.extratypes')
extra_types = 'cproj_extra_types' # non-default value
_fromsrcdir = lambda x: os.path.join('src', x)
_inbasics = {'srcfiles': _fromsrcdir('basics*'),
'incfiles': 'basics.h',
}
_indiscovery = {'srcfiles': _fromsrcdir('discovery*'),
'incfiles': 'discovery.h',
}
variables = [
apiname('PersonID', tarbase='pybasics', **_inbasics),
apiname('*', **_indiscovery),
]
functions = [
apiname('voided', **_inbasics),
{'srcname': 'func0',
'tarname': 'a_better_name',
'srcfiles': _fromsrcdir('basics*'),
'incfiles': 'basics.h',
},
apiname('func1', **_inbasics),
apiname('func2', **_inbasics),
apiname('func3', **_inbasics),
apiname('func4', tarbase='pybasics', **_inbasics),
apiname('call_threenums_op_from_c', tarbase='pybasics', **_inbasics),
'b2VelocityConstraintPoint', 'b2Version', 'b2WeldJointDef',
'b2WheelJointDef', 'b2WorldManifold', 'b2WorldQueryWrapper',
'b2WorldRayCastWrapper',
]
stlcontainers = []
dtypes_module = 'dt'
stlcontainers_module = 'stlc'
variables = []
functions = []
classes = [
# Structs
apiname(srcname='b2AABB', tarname='BoxTwoAABB',
**_api_name_kwargs('Collision/b2Collision*')),
apiname(srcname='b2Block', tarname='BoxTwoBlock',
**_api_name_kwargs('Common/b2BlockAllocator*')),
apiname(srcname='b2BodyDef', tarname='BoxTwoBodyDef',
**_api_name_kwargs('Dynamics/b2Body*')),
apiname(srcname='b2Chunk', tarname='BoxTwoChunk',
**_api_name_kwargs('Common/b2BlockAllocator*')),
apiname(srcname='b2ClipVertex', tarname='BoxTwoClipVertex',
**_api_name_kwargs('Collision/b2Collision*')),
apiname(srcname='b2Color', tarname='BoxTwoColor',
**_api_name_kwargs('Common/b2Draw*')),
apiname(srcname='b2ContactEdge', tarname='BoxTwoContactEdge',
**_api_name_kwargs('Dynamics/Contacts/b2Contact*')),
apiname(srcname='b2ContactFeature', tarname='BoxTwoContactFeature',
**_api_name_kwargs('Collision/b2Collision*')),
apiname(srcname='b2ContactID', tarname='BoxTwoContactID',
package = 'iwrf'
packagedir = 'iwrf'
from xdress.utils import DEFAULT_PLUGINS
from xdress.utils import apiname
plugins = list(DEFAULT_PLUGINS) + ['xdress.autoall',]
#xdress.autoall.clang_includes = ('../include',)
classes = [apiname('iwrf_ts_processing',
('../iwrf_lib/iwrf_functions.c'),
incfiles='../include/iwrf_functions.h'),
apiname('iwrf_packet_info',
('../iwrf_lib/iwrf_functions.c'),
incfiles='../include/iwrf_data.h')]
functions = [apiname('iwrf_ts_processing_init',('../iwrf_lib/iwrf_functions.c'),
incfiles= '../include/iwrf_functions.h')]
}
doxyfile_name = './build/tally_doxyfile'
extra_types = 'extra_types' # non-default value
stlcontainers = [
('set', 'str'),
('set', 'int32'),
('map', 'str', 'str'),
('map', 'str', 'int32'),
('map', 'int32', 'str'),
('map', 'str', 'uint32'),
('map', 'uint32', 'str'),
('map', 'str', 'float64'),
('map', 'uint32', 'uint32'),
('map', 'int32', 'int32'),
('map', 'int32', 'float64'),
('map', 'int32', 'complex'),
('map', 'uint32', 'float64'),
('map', 'str', ('vector', 'float64')),
('map', 'int32', ('vector', 'float64')),
]
#stlcontainers_module = 'stlcontainers'
classes = [apiname('Tally','cpp/tally.*',incfiles='tally.h')]
functions = []
]
stlcontainers_module = 'stlc'
_fromsrcdir = lambda x: os.path.join('src', x)
_inbasics = {'srcfiles': _fromsrcdir('basics.[ch]*'),
'incfiles': 'basics.h',
'language': 'c++',
}
_indiscovery = {'srcfiles': _fromsrcdir('discovery*'),
'incfiles': 'discovery.h',
'language': 'c++',
}
variables = [
apiname('PersonID', tarbase='pybasics', **_inbasics),
apiname('*', **_indiscovery),
]
functions = [
apiname('voided', **_inbasics),
{'srcname': 'func0',
'tarname': 'a_better_name',
'incfiles': 'basics.h',
'srcfiles': _fromsrcdir('basics.[ch]*')},
apiname('func1', **_inbasics),
apiname('func2', **_inbasics),
apiname('func3', **_inbasics),
apiname('func4', tarbase='pybasics', **_inbasics),
apiname(('findmin', 'int32', 'float32',), **_inbasics),
apiname(('findmin', 'float64', 'float32',), **_inbasics),
'cdef int i{var}\n'
'cdef int {var}_size\n'
'cdef {t.cython_npctypes[0]} * {var}_data\n'
'{var}_size = len({var})\n'
'if isinstance({var}, np.ndarray) and (<np.ndarray> {var}).descr.type_num == {t.cython_nptype}:\n'
' {var}_data = <{t.cython_npctypes[0]} *> np.PyArray_DATA(<np.ndarray> {var})\n'
' {proxy_name} = {t.cython_ctype}(<size_t> {var}_size)\n'
' for i{var} in range({var}_size):\n'
' {proxy_name}[i{var}] = {var}_data[i{var}]\n'
'else:\n'
' {proxy_name} = {t.cython_ctype}(<size_t> {var}_size)\n'
' for i{var} in range({var}_size):\n'
' {proxy_name}[i{var}] = <{t.cython_npctypes[0]}> {var}[i{var}]\n'
),
('{proxy_name}')
)
# register_class(name=None, template_args=None, cython_c_type=None, cython_cimport=None, cython_cy_type=None, cython_py_type=None, cython_template_class_name=None, cython_template_function_name=None, cython_cyimport=None, cython_pyimport=None, cython_c2py=None, cython_py2c=None, cpp_type=None, human_name=None, from_pytype=None)[source]¶
ts.register_class('Matrix', template_args=('t', 'x', 'y'),
cython_c_type='eigen_matrix', cython_cimport=('eigen.matrix', 'Matrix', 'eigen_matrix'),
cython_cy_type='np.ndarray', cython_py_type='np.ndarray',
cython_template_class_name='Matrix{t}', cython_template_function_name='matrix_{t}',
cython_cyimport=(('numpy', 'as', 'np'), ('{dtypes}',)), cython_pyimport=('numpy', 'as', 'np'), cython_c2py=c2py,
cython_py2c=py2c, cpp_type='Eigen::Matrix')
classes = [
apiname('EigenTest', **_incore)
]
#del ts
from xdress.utils import apiname
package = 'mypack' # top-level python package name
packagedir = 'mypack' # loation of the python package
stlcontainers = [
('vector', 'str'),
('set', 'uint'),
('map', 'int', 'float'),
]
classes = [
apiname('A', ('src/hoover.h', 'src/hoover.cpp'), incfiles='hoover.h'),
apiname('B', ('src/hoover.h', 'src/hoover.cpp'), 'hoover_b', incfiles='hoover.h'),
]
functions = [apiname('do_nothing_ab', ('src/hoover.h', 'src/hoover.cpp'), 'hoover_b',
incfiles='hoover.h')]
from xdress.utils import apiname
package = 'mypack' # top-level python package name
packagedir = 'mypack' # loation of the python package
extra_types = 'mypack_extra_types'
stlcontainers = [
('vector', 'str'),
('set', 'uint'),
('map', 'int', 'float'),
]
classes = [
apiname('A', ('src/hoover.h', 'src/hoover.cpp'), incfiles='hoover.h'),
apiname('B', ('src/hoover.h', 'src/hoover.cpp'),
'hoover_b',
incfiles='hoover.h'),
]
functions = [
apiname('do_nothing_ab', ('src/hoover.h', 'src/hoover.cpp'),
'hoover_b',
incfiles='hoover.h')
]
'Vehicle', 'btAlignedObjectArray', 'btContactConstraint', # Excluded because they were causing xdress problems
'Gimpact', 'Featherstone', 'vectormath', 'MiniCL', 'Bullet-C-Api.h', 'BulletSoftBody', # Just to simplify things while I'm getting it to work
]
def contains_excluded(path):
for e in EXCLUDES:
if e in path:
return True
return False
INCLUDE_DIRS = [s[0] for s in os.walk(SOURCE_DIR) if not contains_excluded(s)] + [np.get_include()]
ALL_FILES = []
[ALL_FILES.extend(os.path.join(d[0], f) for f in d[2]) for d in os.walk(SOURCE_DIR)]
for f in ALL_FILES[:]:
if contains_excluded(f):
ALL_FILES.remove(f)
SOURCE_FILES = [f for f in ALL_FILES if f.endswith('.cpp')]
INC_FILES = [f for f in ALL_FILES if f.endswith('.h')]
# execution
includes = [SOURCE_DIR]
package = PACKAGE_NAME # top-level python package name
packagedir = PACKAGE_NAME # location of the python package
# TODO: The incfiles is blank (for now)
API_NAMES = [apiname('*', (f, f.replace('.cpp', '.h')), incfiles=[], language="c++") for f in SOURCE_FILES]
extra_types = 'extra_types'
stlcontainers = []
classes = API_NAMES
functions = API_NAMES
('vector', 'ExNode'),
('vector', 'ExArc'),
('vector', ('vector', 'int')),
('map', 'int', 'float'),
('map', 'int', 'int'),
('map', 'int', 'bool'),
('map', 'int', ('vector', 'int')),
('map', 'int', ('vector', 'float')),
('map', 'int', ('vector', ('vector', 'int'))),
('map', 'int', ('map', 'int', ('vector', 'float'))),
('pair', 'int', 'int'),
]
includes = [
os.path.expanduser('~/.local/include/cyclus'),
'/usr/include/boost',
]
classes = [
apiname('ProbSolution', 'cpp/problem.*', incfiles='problem.h', tarbase='_cproblem'),
apiname('Solver', 'cpp/problem.*', incfiles='problem.h', tarbase='_cproblem'),
apiname('ExGroup', 'cpp/exchange_instance.*', incfiles='exchange_instance.h'),
apiname('ExNode', 'cpp/exchange_instance.*', incfiles='exchange_instance.h'),
apiname('ExArc', 'cpp/exchange_instance.*', incfiles='exchange_instance.h'),
apiname('ExSolution', 'cpp/exchange_instance.*', incfiles='exchange_instance.h'),
]
functions = [
apiname('Run', 'cpp/exchange_instance.*', incfiles='exchange_instance.h'),
]
from xdress.utils import apiname
package = 'memleak' # top-level python package name
extra_types = 'extra_types'
stlcontainers = [
('vector', 'int'),
]
classes = [
apiname('Hollow', 'hollow.*', incfiles='hollow.h'),
]
"GENERATE_LATEX": True, # Could be 'YES' or True
}
doxyfile_name = "./build/tally_doxyfile"
includes = ["/mnt/data/opt/dagmc/hdf5/include"]
extra_types = "extra_types" # non-default value
stlcontainers = [
("set", "str"),
("set", "int32"),
("map", "str", "str"),
("map", "str", "int32"),
("map", "int32", "str"),
("map", "str", "uint32"),
("map", "uint32", "str"),
("map", "str", "float64"),
("map", "uint32", "uint32"),
("map", "int32", "int32"),
("map", "int32", "float64"),
("map", "int32", "complex"),
("map", "uint32", "float64"),
("map", "str", ("vector", "float64")),
("map", "int32", ("vector", "float64")),
]
# stlcontainers_module = 'stlcontainers'
classes = [apiname("Tally", "src/tally.*", incfiles="tally.h")]