def setup(self):
"""This is called one time when the module GUI is initialized
"""
ScriptedLoadableModuleWidget.setup(self)
# Create objects that can be used anywhere in the module. Example: in most cases there should be just one
# object of the logic class
self.logic = CIP_PAARatioLogic()
#
# Create all the widgets. Example Area
mainAreaCollapsibleButton = ctk.ctkCollapsibleButton()
mainAreaCollapsibleButton.text = "Main parameters"
self.layout.addWidget(mainAreaCollapsibleButton)
self.mainAreaLayout = qt.QGridLayout(mainAreaCollapsibleButton)
self.label = qt.QLabel("Select the volume")
self.label.setStyleSheet("margin:10px 0 20px 7px")
self.mainAreaLayout.addWidget(self.label, 0, 0)
self.volumeSelector = slicer.qMRMLNodeComboBox()
self.volumeSelector.nodeTypes = ("vtkMRMLScalarVolumeNode", "")
self.volumeSelector.name = "paa_volumeSelector"
self.volumeSelector.selectNodeUponCreation = True
self.volumeSelector.autoFillBackground = True
self.volumeSelector.addEnabled = True
self.volumeSelector.noneEnabled = False
self.volumeSelector.removeEnabled = False
self.volumeSelector.showHidden = False
self.volumeSelector.showChildNodeTypes = False
self.volumeSelector.setMRMLScene(slicer.mrmlScene)
self.volumeSelector.setStyleSheet(
"margin:0px 0 0px 0; padding:2px 0 2px 5px")
self.mainAreaLayout.addWidget(self.volumeSelector, 0, 1)
self.jumptToTemptativeSliceButton = ctk.ctkPushButton()
self.jumptToTemptativeSliceButton.name = "jumptToTemptativeSliceButton"
self.jumptToTemptativeSliceButton.text = "Jump to temptative slice"
self.jumptToTemptativeSliceButton.toolTip = "Jump to the best estimated slice to place the rulers"
self.jumptToTemptativeSliceButton.setIcon(
qt.QIcon("{0}/ruler.png".format(SlicerUtil.CIP_ICON_DIR)))
self.jumptToTemptativeSliceButton.setIconSize(qt.QSize(20, 20))
self.jumptToTemptativeSliceButton.setStyleSheet("font-weight: bold;")
# self.jumptToTemptativeSliceButton.setFixedWidth(140)
self.mainAreaLayout.addWidget(self.jumptToTemptativeSliceButton, 1, 1)
### Structure Selector
self.structuresGroupbox = qt.QGroupBox("Select the structure")
self.groupboxLayout = qt.QVBoxLayout()
self.structuresGroupbox.setLayout(self.groupboxLayout)
self.mainAreaLayout.addWidget(self.structuresGroupbox, 2, 0)
self.structuresButtonGroup = qt.QButtonGroup()
# btn = qt.QRadioButton("None")
# btn.visible = False
# self.structuresButtonGroup.addButton(btn)
# self.groupboxLayout.addWidget(btn)
btn = qt.QRadioButton("Both")
btn.name = "paaButton"
btn.checked = True
self.structuresButtonGroup.addButton(btn, 0)
self.groupboxLayout.addWidget(btn)
btn = qt.QRadioButton("Pulmonary Arterial")
btn.name = "paRadioButton"
self.structuresButtonGroup.addButton(btn, 1)
self.groupboxLayout.addWidget(btn)
btn = qt.QRadioButton("Aorta")
btn.name = "aortaRadioButton"
self.structuresButtonGroup.addButton(btn, 2)
self.groupboxLayout.addWidget(btn)
### Buttons toolbox
self.buttonsToolboxFrame = qt.QFrame()
self.buttonsToolboxLayout = qt.QGridLayout()
self.buttonsToolboxFrame.setLayout(self.buttonsToolboxLayout)
self.mainAreaLayout.addWidget(self.buttonsToolboxFrame, 2, 1)
self.placeRulersButton = ctk.ctkPushButton()
self.placeRulersButton.text = "Place ruler/s"
self.placeRulersButton.name = "placeRulersButton"
self.placeRulersButton.toolTip = "Place the ruler/s for the selected structure/s in the current slice"
self.placeRulersButton.setIcon(
qt.QIcon("{0}/ruler.png".format(SlicerUtil.CIP_ICON_DIR)))
self.placeRulersButton.setIconSize(qt.QSize(20, 20))
self.placeRulersButton.setFixedWidth(105)
self.placeRulersButton.setStyleSheet("font-weight:bold")
self.buttonsToolboxLayout.addWidget(self.placeRulersButton, 0, 0)
self.moveUpButton = ctk.ctkPushButton()
self.moveUpButton.text = "Move up"
self.moveUpButton.toolTip = "Move the selected ruler/s one slice up"
self.moveUpButton.setIcon(
qt.QIcon("{0}/move_up.png".format(SlicerUtil.CIP_ICON_DIR)))
self.moveUpButton.setIconSize(qt.QSize(20, 20))
self.moveUpButton.setFixedWidth(95)
self.buttonsToolboxLayout.addWidget(self.moveUpButton, 0, 1)
self.moveDownButton = ctk.ctkPushButton()
self.moveDownButton.text = "Move down"
self.moveDownButton.toolTip = "Move the selected ruler/s one slice down"
self.moveDownButton.setIcon(
qt.QIcon("{0}/move_down.png".format(SlicerUtil.CIP_ICON_DIR)))
self.moveDownButton.setIconSize(qt.QSize(20, 20))
self.moveDownButton.setFixedWidth(95)
self.buttonsToolboxLayout.addWidget(self.moveDownButton, 0, 2)
self.removeButton = ctk.ctkPushButton()
self.removeButton.text = "Remove ALL rulers"
self.removeButton.toolTip = "Remove all the rulers for this volume"
self.removeButton.setIcon(
qt.QIcon("{0}/delete.png".format(SlicerUtil.CIP_ICON_DIR)))
self.removeButton.setIconSize(qt.QSize(20, 20))
self.buttonsToolboxLayout.addWidget(self.removeButton, 1, 1, 1, 2, 2)
### Textboxes
self.textboxesFrame = qt.QFrame()
self.textboxesLayout = qt.QFormLayout()
self.textboxesFrame.setLayout(self.textboxesLayout)
self.textboxesFrame.setFixedWidth(190)
self.mainAreaLayout.addWidget(self.textboxesFrame, 3, 0)
self.paTextBox = qt.QLineEdit()
self.paTextBox.setReadOnly(True)
self.textboxesLayout.addRow("PA (mm): ", self.paTextBox)
self.aortaTextBox = qt.QLineEdit()
self.aortaTextBox.setReadOnly(True)
self.textboxesLayout.addRow("Aorta (mm): ", self.aortaTextBox)
self.ratioTextBox = qt.QLineEdit()
self.ratioTextBox.name = "ratioTextBox"
self.ratioTextBox.setReadOnly(True)
self.textboxesLayout.addRow("Ratio PA/A: ", self.ratioTextBox)
# Save case data
self.reportsCollapsibleButton = ctk.ctkCollapsibleButton()
self.reportsCollapsibleButton.text = "Reporting"
self.layout.addWidget(self.reportsCollapsibleButton)
self.reportsLayout = qt.QHBoxLayout(self.reportsCollapsibleButton)
self.storedColumnNames = [
"caseId", "paDiameterMm", "aortaDiameterMm", "pa1r", "pa1a",
"pa1s", "pa2r", "pa2a", "pa2s", "a1r", "a1a", "a1s", "a2r", "a2a",
"a2s"
]
columns = CaseReportsWidget.getColumnKeysNormalizedDictionary(
self.storedColumnNames)
self.reportsWidget = CaseReportsWidget(
self.moduleName,
columns,
parentWidget=self.reportsCollapsibleButton)
self.reportsWidget.setup()
# Init state
self.resetModuleState()
self.preventSavingState = False
self.saveStateBeforeEnteringModule()
self.preventSavingState = True
self.switchToRedView()
#####
# Case navigator
if SlicerUtil.isSlicerACILLoaded():
caseNavigatorAreaCollapsibleButton = ctk.ctkCollapsibleButton()
caseNavigatorAreaCollapsibleButton.text = "Case navigator"
self.layout.addWidget(caseNavigatorAreaCollapsibleButton, 0x0020)
# caseNavigatorLayout = qt.QVBoxLayout(caseNavigatorAreaCollapsibleButton)
# Add a case list navigator
from ACIL.ui import CaseNavigatorWidget
self.caseNavigatorWidget = CaseNavigatorWidget(
self.moduleName, caseNavigatorAreaCollapsibleButton)
self.caseNavigatorWidget.setup()
self.layout.addStretch()
# Connections
self.observers = []
self.volumeSelector.connect('currentNodeChanged(vtkMRMLNode*)',
self.onVolumeSelectorChanged)
self.jumptToTemptativeSliceButton.connect(
'clicked()', self.onJumpToTemptativeSliceButtonClicked)
self.placeRulersButton.connect('clicked()', self.onPlaceRulersClicked)
self.moveUpButton.connect('clicked()', self.onMoveUpRulerClicked)
self.moveDownButton.connect('clicked()', self.onMoveDownRulerClicked)
self.removeButton.connect('clicked()', self.onRemoveRulerClicked)
self.reportsWidget.addObservable(
self.reportsWidget.EVENT_SAVE_BUTTON_CLICKED, self.onSaveReport)
# Init state
self.resetModuleState()
self.preventSavingState = False
self.saveStateBeforeEnteringModule()
self.preventSavingState = True
def setup(self):
"""This is called one time when the module GUI is initialized
"""
ScriptedLoadableModuleWidget.setup(self)
# Create objects that can be used anywhere in the module. Example: in most cases there should be just one
# object of the logic class
self.logic = CIP_ParenchymaSubtypeTrainingLogic()
self.currentVolumeLoaded = None
self.blockNodeEvents = False
##########
# Main area
self.mainAreaCollapsibleButton = ctk.ctkCollapsibleButton()
self.mainAreaCollapsibleButton.text = "Main area"
self.layout.addWidget(self.mainAreaCollapsibleButton,
SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.mainLayout = qt.QGridLayout(self.mainAreaCollapsibleButton)
# Node selector
volumeLabel = qt.QLabel("Active volume: ")
volumeLabel.setStyleSheet("margin-left:5px")
self.mainLayout.addWidget(volumeLabel, 0, 0)
self.volumeSelector = slicer.qMRMLNodeComboBox()
self.volumeSelector.nodeTypes = ("vtkMRMLScalarVolumeNode", "")
self.volumeSelector.selectNodeUponCreation = True
self.volumeSelector.autoFillBackground = True
self.volumeSelector.addEnabled = False
self.volumeSelector.noneEnabled = False
self.volumeSelector.removeEnabled = False
self.volumeSelector.showHidden = False
self.volumeSelector.showChildNodeTypes = False
self.volumeSelector.setMRMLScene(slicer.mrmlScene)
self.volumeSelector.setFixedWidth(250)
self.volumeSelector.setStyleSheet("margin: 15px 0")
#self.volumeSelector.selectNodeUponCreation = False
self.mainLayout.addWidget(self.volumeSelector, 0, 1, 1, 3)
labelsStyle = "font-weight: bold; margin: 0 0 5px 5px;"
# Types Radio Buttons
typesLabel = qt.QLabel("Select the type")
typesLabel.setStyleSheet(labelsStyle)
typesLabel.setFixedHeight(15)
self.mainLayout.addWidget(typesLabel, 1, 0)
self.typesFrame = qt.QFrame()
self.typesLayout = qt.QVBoxLayout(self.typesFrame)
self.mainLayout.addWidget(self.typesFrame, 2, 0,
SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.typesRadioButtonGroup = qt.QButtonGroup()
for key in self.logic.params.mainTypes.iterkeys():
rbitem = qt.QRadioButton(self.logic.params.getMainTypeLabel(key))
self.typesRadioButtonGroup.addButton(rbitem, key)
self.typesLayout.addWidget(rbitem)
self.typesRadioButtonGroup.buttons()[0].setChecked(True)
# Subtypes Radio buttons
subtypesLabel = qt.QLabel("Select the subtype")
subtypesLabel.setStyleSheet(labelsStyle)
subtypesLabel.setFixedHeight(15)
self.mainLayout.addWidget(subtypesLabel, 1, 1)
self.subtypesRadioButtonGroup = qt.QButtonGroup()
self.subtypesFrame = qt.QFrame()
self.subtypesFrame.setMinimumHeight(275)
self.subtypesLayout = qt.QVBoxLayout(self.subtypesFrame)
self.subtypesLayout.setAlignment(SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.subtypesLayout.setStretch(0, 0)
self.mainLayout.addWidget(
self.subtypesFrame, 2, 1,
SlicerUtil.ALIGNMENT_VERTICAL_TOP) # Put the frame in the top
# The content will be loaded dynamically every time the main type is modified
# Artifact radio buttons
self.artifactsLabel = qt.QLabel("Artifact")
self.artifactsLabel.setStyleSheet(labelsStyle)
self.artifactsLabel.setFixedHeight(15)
self.mainLayout.addWidget(self.artifactsLabel, 1, 2)
#self.mainLayout.addWidget(qt.QLabel("Select the artifact"), 1, 1)
self.artifactsRadioButtonGroup = qt.QButtonGroup()
self.artifactsFrame = qt.QFrame()
self.artifactsLayout = qt.QVBoxLayout(self.artifactsFrame)
self.mainLayout.addWidget(self.artifactsFrame, 2, 2,
SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.artifactsRadioButtonGroup = qt.QButtonGroup()
for artifactId in self.logic.params.artifacts.iterkeys():
rbitem = qt.QRadioButton(
self.logic.params.getArtifactLabel(artifactId))
self.artifactsRadioButtonGroup.addButton(rbitem, artifactId)
self.artifactsLayout.addWidget(rbitem)
self.artifactsRadioButtonGroup.buttons()[0].setChecked(True)
# Load caselist button
self.loadButton = ctk.ctkPushButton()
self.loadButton.text = "Load fiducials file"
self.loadButton.setIcon(
qt.QIcon("{0}/open_file.png".format(SlicerUtil.CIP_ICON_DIR)))
self.loadButton.setIconSize(qt.QSize(20, 20))
self.loadButton.setFixedWidth(135)
self.mainLayout.addWidget(self.loadButton, 3, 0)
# Remove fiducial button
self.removeLastFiducialButton = ctk.ctkPushButton()
self.removeLastFiducialButton.text = "Remove last fiducial"
self.removeLastFiducialButton.toolTip = "Remove the last fiducial added"
self.removeLastFiducialButton.setIcon(
qt.QIcon("{0}/delete.png".format(SlicerUtil.CIP_ICON_DIR)))
self.removeLastFiducialButton.setIconSize(qt.QSize(20, 20))
self.removeLastFiducialButton.setFixedWidth(200)
self.mainLayout.addWidget(self.removeLastFiducialButton, 3, 1)
# Save results button
self.saveResultsButton = ctk.ctkPushButton()
self.saveResultsButton.setText("Save markups")
self.saveResultsButton.toolTip = "Save the markups in the specified directory"
self.saveResultsButton.setIcon(
qt.QIcon("{0}/Save.png".format(SlicerUtil.CIP_ICON_DIR)))
self.saveResultsButton.setIconSize(qt.QSize(20, 20))
self.mainLayout.addWidget(self.saveResultsButton, 4, 0)
# Save results directory button
defaultPath = os.path.join(
SlicerUtil.getSettingsDataFolder(self.moduleName),
"results") # Assign a default path for the results
path = SlicerUtil.settingGetOrSetDefault(self.moduleName,
"SaveResultsDirectory",
defaultPath)
self.saveResultsDirectoryButton = ctk.ctkDirectoryButton()
self.saveResultsDirectoryButton.directory = path
self.saveResultsDirectoryButton.setMaximumWidth(375)
self.mainLayout.addWidget(self.saveResultsDirectoryButton, 4, 1, 1, 2)
#####
# Case navigator
self.caseNavigatorWidget = None
if SlicerUtil.isSlicerACILLoaded():
caseNavigatorAreaCollapsibleButton = ctk.ctkCollapsibleButton()
caseNavigatorAreaCollapsibleButton.text = "Case navigator"
self.layout.addWidget(caseNavigatorAreaCollapsibleButton, 0x0020)
# caseNavigatorLayout = qt.QVBoxLayout(caseNavigatorAreaCollapsibleButton)
# Add a case list navigator
from ACIL.ui import CaseNavigatorWidget
self.caseNavigatorWidget = CaseNavigatorWidget(
self.moduleName, caseNavigatorAreaCollapsibleButton)
self.caseNavigatorWidget.setup()
# Listen for the event of loading a new labelmap
self.caseNavigatorWidget.addObservable(
self.caseNavigatorWidget.EVENT_LABELMAP_LOADED,
self.__onNewILDClassificationLabelmapLoaded__)
self.layout.addStretch()
self.updateState()
# Connections
self.typesRadioButtonGroup.connect("buttonClicked (QAbstractButton*)",
self.__onTypesRadioButtonClicked__)
self.subtypesRadioButtonGroup.connect(
"buttonClicked (QAbstractButton*)",
self.__onSubtypesRadioButtonClicked__)
self.artifactsRadioButtonGroup.connect(
"buttonClicked (QAbstractButton*)",
self.__onSubtypesRadioButtonClicked__)
self.volumeSelector.connect('currentNodeChanged(vtkMRMLNode*)',
self.__onCurrentNodeChanged__)
self.loadButton.connect('clicked()', self.openFiducialsFile)
self.removeLastFiducialButton.connect(
'clicked()', self.__onRemoveLastFiducialButtonClicked__)
# self.saveResultsOpenDirectoryDialogButton.connect('clicked()', self.onOpenDirectoryDialogButtonClicked)
self.saveResultsDirectoryButton.connect(
"directoryChanged (QString)",
self.__onSaveResultsDirectoryChanged__)
self.saveResultsButton.connect('clicked()',
self.__onSaveResultsButtonClicked__)
self.observers = []
self.observers.append(
slicer.mrmlScene.AddObserver(slicer.vtkMRMLScene.NodeAddedEvent,
self.__onNodeAddedObserver__))
self.observers.append(
slicer.mrmlScene.AddObserver(slicer.vtkMRMLScene.EndCloseEvent,
self.__onSceneClosed__))
def setup(self):
"""Init the widget """
# self.firstLoad = True
ScriptedLoadableModuleWidget.setup(self)
# Create objects that can be used anywhere in the module. Example: in most cases there should be just one
# object of the logic class
self._initLogic_()
##########
# Main area
self.mainAreaCollapsibleButton = ctk.ctkCollapsibleButton()
self.mainAreaCollapsibleButton.text = "Main area"
self.layout.addWidget(self.mainAreaCollapsibleButton,
SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.mainLayout = qt.QGridLayout(self.mainAreaCollapsibleButton)
# Node selector
volumeLabel = qt.QLabel("Active volume: ")
volumeLabel.setStyleSheet("margin-left:5px")
self.mainLayout.addWidget(volumeLabel, 0, 0)
self.volumeSelector = slicer.qMRMLNodeComboBox()
self.volumeSelector.nodeTypes = ("vtkMRMLScalarVolumeNode", "")
self.volumeSelector.selectNodeUponCreation = True
self.volumeSelector.autoFillBackground = True
self.volumeSelector.addEnabled = False
self.volumeSelector.noneEnabled = False
self.volumeSelector.removeEnabled = False
self.volumeSelector.showHidden = False
self.volumeSelector.showChildNodeTypes = False
self.volumeSelector.setMRMLScene(slicer.mrmlScene)
self.volumeSelector.setMinimumWidth(150)
self.volumeSelector.setStyleSheet("margin: 15px 0")
# self.volumeSelector.selectNodeUponCreation = False
self.mainLayout.addWidget(self.volumeSelector, 0, 1, 1, 2)
self.volumeSelector.connect('currentNodeChanged(vtkMRMLNode*)',
self._onMainVolumeChanged_)
### Radio buttons frame
self.radioButtonsFrame = qt.QFrame()
self.radioButtonsLayout = qt.QHBoxLayout(self.radioButtonsFrame)
self.typesFrame = qt.QFrame()
self.radioButtonsLayout.addWidget(self.typesFrame)
self.typesLayout = qt.QVBoxLayout(self.typesFrame)
labelsStyle = "font-weight: bold; margin: 0 0 10px 0px;"
# Types Radio Buttons
typesLabel = qt.QLabel("Select type")
typesLabel.setStyleSheet(labelsStyle)
self.typesLayout.addWidget(typesLabel)
self.typesRadioButtonGroup = qt.QButtonGroup()
for key in self.logic.params.mainTypes.keys():
rbitem = qt.QRadioButton(self.logic.params.getMainTypeLabel(key))
self.typesRadioButtonGroup.addButton(rbitem, key)
self.typesLayout.addWidget(rbitem)
self.typesRadioButtonGroup.buttons()[0].setChecked(True)
# Subtypes Radio buttons
# The content will be loaded dynamically every time the main type is modified
self.subtypesFrame = qt.QFrame()
self.radioButtonsLayout.addWidget(self.subtypesFrame)
self.subtypesLayout = qt.QVBoxLayout(self.subtypesFrame)
subtypesLabel = qt.QLabel("Select subtype")
subtypesLabel.setStyleSheet(labelsStyle)
self.subtypesLayout.addWidget(subtypesLabel)
self.subtypesLayout.setAlignment(SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.subtypesRadioButtonGroup = qt.QButtonGroup()
# Add all the subtypes (we will filter later in "updateState" function)
for key in self.logic.params.subtypes.keys():
# Build the description
rbitem = qt.QRadioButton(self.logic.params.getSubtypeLabel(key))
self.subtypesRadioButtonGroup.addButton(rbitem, key)
self.subtypesLayout.addWidget(rbitem,
SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.subtypesLayout.addStretch()
# Region radio buttons
self.regionsFrame = qt.QFrame()
self.radioButtonsLayout.addWidget(self.regionsFrame)
self.regionsLayout = qt.QVBoxLayout(self.regionsFrame)
regionsLabel = qt.QLabel("Select region")
regionsLabel.setStyleSheet(labelsStyle)
self.regionsLayout.addWidget(regionsLabel)
self.regionsLayout.setAlignment(SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.regionsLayout.setStretch(0, 0)
self.regionsRadioButtonGroup = qt.QButtonGroup()
self.regionsFrame = qt.QFrame()
# Add all the regions
for key in self.logic.params.regions.keys():
# Build the description
rbitem = qt.QRadioButton(self.logic.params.getRegionLabel(key))
self.regionsRadioButtonGroup.addButton(rbitem, key)
self.regionsLayout.addWidget(rbitem,
SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.regionsLayout.addStretch()
self.regionsRadioButtonGroup.buttons()[0].setChecked(True)
# Artifact radio buttons (Add them to the same layout as the type)
# self.separatorLabel = qt.QLabel("------------")
# labelsStyle = "margin: 5px 0 5px 0;"
# self.separatorLabel.setStyleSheet(labelsStyle)
# self.typesLayout.addWidget(self.separatorLabel)
# self.artifactsLabel = qt.QLabel("Select artifact")
# labelsStyle = "font-weight: bold; margin: 15px 0 10px 0;"
# self.artifactsLabel.setStyleSheet(labelsStyle)
# self.typesLayout.addWidget(self.artifactsLabel)
# self.artifactsRadioButtonGroup = qt.QButtonGroup()
# for artifactId in self.logic.params.artifacts.iterkeys():
# rbitem = qt.QRadioButton(self.logic.params.getArtifactLabel(artifactId))
# self.artifactsRadioButtonGroup.addButton(rbitem, artifactId)
# self.typesLayout.addWidget(rbitem)
# self.artifactsRadioButtonGroup.buttons()[0].setChecked(True)
#
self.typesLayout.setAlignment(SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.typesLayout.addStretch()
# Connections
self.typesRadioButtonGroup.connect("buttonClicked (QAbstractButton*)",
self.__onTypesRadioButtonClicked__)
self.subtypesRadioButtonGroup.connect(
"buttonClicked (QAbstractButton*)",
self.__onSecondaryRadioButtonClicked__)
self.regionsRadioButtonGroup.connect(
"buttonClicked (QAbstractButton*)",
self.__onSecondaryRadioButtonClicked__)
# self.artifactsRadioButtonGroup.connect("buttonClicked (QAbstractButton*)", self.__onTypesRadioButtonClicked__)
self.mainLayout.addWidget(self.radioButtonsFrame, 2, 0, 1, 3,
SlicerUtil.ALIGNMENT_VERTICAL_TOP)
# Save results button
self.saveResultsButton = ctk.ctkPushButton()
self.saveResultsButton.setText("Save results")
self.saveResultsButton.toolTip = "Save the results labelmap in the specified directory"
self.saveResultsButton.setIcon(
qt.QIcon("{0}/Save.png".format(SlicerUtil.CIP_ICON_DIR)))
self.saveResultsButton.setIconSize(qt.QSize(20, 20))
self.saveResultsButton.setFixedWidth(135)
self.mainLayout.addWidget(self.saveResultsButton, 4, 0)
self.saveResultsButton.connect('clicked()',
self._onSaveResultsButtonClicked_)
# Save results directory button
defaultPath = os.path.join(
SlicerUtil.getSettingsDataFolder(self.moduleName),
"results") # Assign a default path for the results
path = SlicerUtil.settingGetOrSetDefault(self.moduleName,
"SaveResultsDirectory",
defaultPath)
self.saveResultsDirectoryButton = ctk.ctkDirectoryButton()
self.saveResultsDirectoryButton.directory = path
self.saveResultsDirectoryButton.setMaximumWidth(440)
self.mainLayout.addWidget(self.saveResultsDirectoryButton, 4, 1, 1, 2)
self.saveResultsDirectoryButton.connect(
"directoryChanged (QString)", self._onSaveResultsDirectoryChanged_)
self._createSegmentEditorWidget_()
# MIP viewer (by default it will be hidden)
self.mipCollapsibleButton = ctk.ctkCollapsibleButton()
self.mipCollapsibleButton.text = "MIP viewer"
mipLayout = qt.QVBoxLayout(self.mipCollapsibleButton)
self.mainLayout.addWidget(self.mipCollapsibleButton)
self.mipViewer = CIPUI.MIPViewerWidget(mipLayout)
self.mipCollapsibleButton.setVisible(False)
self.mipViewer.setup()
self.mipViewer.isCrosshairEnabled = False
self.mipCollapsibleButton.collapsed = True
#####
# Case navigator
self.caseNavigatorWidget = None
if SlicerUtil.isSlicerACILLoaded():
caseNavigatorAreaCollapsibleButton = ctk.ctkCollapsibleButton()
caseNavigatorAreaCollapsibleButton.text = "Case navigator"
self.layout.addWidget(caseNavigatorAreaCollapsibleButton, 0x0020)
# caseNavigatorLayout = qt.QVBoxLayout(caseNavigatorAreaCollapsibleButton)
# Add a case list navigator
from ACIL.ui import CaseNavigatorWidget
self.caseNavigatorWidget = CaseNavigatorWidget(
self.moduleName, caseNavigatorAreaCollapsibleButton)
self.caseNavigatorWidget.setup()
# Listen for event in order to save the current labelmap before moving to the next case
self.caseNavigatorWidget.addObservable(
self.caseNavigatorWidget.EVENT_PRE_NEXT,
self._checkSaveChanges_)
self.caseNavigatorWidget.addObservable(
self.caseNavigatorWidget.EVENT_PRE_PREVIOUS,
self._checkSaveChanges_)
self.caseNavigatorWidget.addObservable(
self.caseNavigatorWidget.EVENT_PRE_LABELMAP_LOAD,
self._onPreNavigatorLabelmapLoaded_)
self.caseNavigatorWidget.addObservable(
self.caseNavigatorWidget.EVENT_LABELMAP_LOADED,
self._onNavigatorLabelmapLoaded_)
self.layout.addStretch()
# Extra Connections
self._createSceneObservers_()
self.disableEvents = False
self.setMainTypeGUIProperties()
def setup(self):
"""This is called one time when the module GUI is initialized
"""
ScriptedLoadableModuleWidget.setup(self)
# Create objects that can be used anywhere in the module. Example: in most cases there should be just one
# object of the logic class
self._initLogic_()
self.currentVolumeLoaded = None
self.blockNodeEvents = False
##########
# Main area
self.mainAreaCollapsibleButton = ctk.ctkCollapsibleButton()
self.mainAreaCollapsibleButton.text = "Main area"
self.layout.addWidget(self.mainAreaCollapsibleButton,
SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.mainLayout = qt.QGridLayout(self.mainAreaCollapsibleButton)
# Node selector
volumeLabel = qt.QLabel("Active volume: ")
volumeLabel.setStyleSheet("margin-left:5px")
self.mainLayout.addWidget(volumeLabel, 0, 0)
self.volumeSelector = slicer.qMRMLNodeComboBox()
self.volumeSelector.nodeTypes = ("vtkMRMLScalarVolumeNode", "")
self.volumeSelector.selectNodeUponCreation = True
self.volumeSelector.autoFillBackground = True
self.volumeSelector.addEnabled = False
self.volumeSelector.noneEnabled = False
self.volumeSelector.removeEnabled = False
self.volumeSelector.showHidden = False
self.volumeSelector.showChildNodeTypes = False
self.volumeSelector.setMRMLScene(slicer.mrmlScene)
self.volumeSelector.setFixedWidth(250)
self.volumeSelector.setStyleSheet("margin: 15px 0")
#self.volumeSelector.selectNodeUponCreation = False
self.mainLayout.addWidget(self.volumeSelector, 0, 1, 1, 3)
self.volumeSelector.connect('currentNodeChanged(vtkMRMLNode*)',
self.__onCurrentNodeChanged__)
# Radio buttons frame. This will be filled by every child module
self.radioButtonsFrame = qt.QFrame()
self.mainLayout.addWidget(self.radioButtonsFrame, 2, 0, 1, 3,
SlicerUtil.ALIGNMENT_VERTICAL_TOP)
# Load caselist button
self.loadButton = ctk.ctkPushButton()
self.loadButton.text = "Load fiducials file"
self.loadButton.setIcon(
qt.QIcon("{0}/open_file.png".format(SlicerUtil.CIP_ICON_DIR)))
self.loadButton.setIconSize(qt.QSize(20, 20))
self.loadButton.setFixedWidth(135)
self.mainLayout.addWidget(self.loadButton, 3, 0)
self.loadButton.connect('clicked()', self.openFiducialsFile)
# Remove fiducial button
self.removeLastFiducialButton = ctk.ctkPushButton()
self.removeLastFiducialButton.text = "Remove last fiducial"
self.removeLastFiducialButton.toolTip = "Remove the last fiducial added"
self.removeLastFiducialButton.setIcon(
qt.QIcon("{0}/delete.png".format(SlicerUtil.CIP_ICON_DIR)))
self.removeLastFiducialButton.setIconSize(qt.QSize(20, 20))
self.removeLastFiducialButton.setFixedWidth(200)
self.mainLayout.addWidget(self.removeLastFiducialButton, 3, 1)
self.removeLastFiducialButton.connect(
'clicked()', self.__onRemoveLastFiducialButtonClicked__)
# Save results button
self.saveResultsButton = ctk.ctkPushButton()
self.saveResultsButton.setText("Save markups")
self.saveResultsButton.toolTip = "Save the markups in the specified directory"
self.saveResultsButton.setIcon(
qt.QIcon("{0}/Save.png".format(SlicerUtil.CIP_ICON_DIR)))
self.saveResultsButton.setIconSize(qt.QSize(20, 20))
self.saveResultsButton.setFixedWidth(135)
self.mainLayout.addWidget(self.saveResultsButton, 4, 0)
self.saveResultsButton.connect('clicked()',
self.__onSaveResultsButtonClicked__)
# Save results directory button
defaultPath = os.path.join(
SlicerUtil.getSettingsDataFolder(self.moduleName),
"results") # Assign a default path for the results
path = SlicerUtil.settingGetOrSetDefault(self.moduleName,
"SaveResultsDirectory",
defaultPath)
self.saveResultsDirectoryButton = ctk.ctkDirectoryButton()
self.saveResultsDirectoryButton.directory = path
self.saveResultsDirectoryButton.setMaximumWidth(375)
self.mainLayout.addWidget(self.saveResultsDirectoryButton, 4, 1, 1, 2)
self.saveResultsDirectoryButton.connect(
"directoryChanged (QString)",
self.__onSaveResultsDirectoryChanged__)
#####
# Case navigator
self.caseNavigatorWidget = None
if SlicerUtil.isSlicerACILLoaded():
caseNavigatorAreaCollapsibleButton = ctk.ctkCollapsibleButton()
caseNavigatorAreaCollapsibleButton.text = "Case navigator"
self.layout.addWidget(caseNavigatorAreaCollapsibleButton, 0x0020)
# caseNavigatorLayout = qt.QVBoxLayout(caseNavigatorAreaCollapsibleButton)
# Add a case list navigator
from ACIL.ui import CaseNavigatorWidget
self.caseNavigatorWidget = CaseNavigatorWidget(
self.moduleName, caseNavigatorAreaCollapsibleButton)
self.caseNavigatorWidget.setup()
# Listen for the event of loading a new labelmap
# self.caseNavigatorWidget.addObservable(self.caseNavigatorWidget.EVENT_LABELMAP_LOADED, self.__onNewILDClassificationLabelmapLoaded__)
self.caseNavigatorWidget.addObservable(
self.caseNavigatorWidget.EVENT_BUNDLE_CASE_FINISHED,
self.__onFinishCaseBundleLoad__)
self.layout.addStretch()
# Extra Connections
self._createSceneObservers_()
