def QGI_test3():
input_query_graph = {
"message": {
"query_graph": {
"nodes": {
"n00": {
"id": "MONDO:0002715"
},
"n01": {
"category": "biolink:ChemicalSubstance"
},
"n02": {
"category": "biolink:Gene"
}
},
"edges": {
"e00": {
"predicate": "biolink:correlated_with",
"subject": "n00",
"object": "n01"
},
"e01": {
"predicate": "biolink:related_to",
"subject": "n01",
"object": "n02"
}
}
}
}
}
#### Create a template Message
response = ARAXResponse()
messenger = ARAXMessenger()
messenger.create_envelope(response)
message = ARAXMessenger().from_dict(input_query_graph['message'])
response.envelope.message.query_graph = message.query_graph
interpreter = ARAXQueryGraphInterpreter()
interpreter.translate_to_araxi(response)
if response.status != 'OK':
print(response.show(level=ARAXResponse.DEBUG))
return response
araxi_commands = response.data['araxi_commands']
for cmd in araxi_commands:
print(f" - {cmd}")
#### Show the final result
print('-------------------------')
print(response.show(level=ARAXResponse.DEBUG))
print(json.dumps(message.to_dict(), sort_keys=True, indent=2))
def QGI_test2():
#### Set example query_graph
# TRAPI 0.9.2
input_query_graph = { "message": { "query_graph": { "nodes": [ { "id": "n1", "category": "chemical_substance" }, { "id": "n2", "curie": "UMLS:C0002395" } ], "edges": [ { "id": "e1", "predicate": "clinically_tested_approved_unknown_phase", "source_id": "n1", "target_id": "n2" } ] } } }
# TRAPI 1.0.0
input_query_graph = { "message": { "query_graph": {
"nodes": { "n1": { "category": "biolink:ChemicalEntity" }, "n2": { "id": "UMLS:C0002395" } },
"edges": { "e1": { "predicate": "clinically_tested_approved_unknown_phase", "subject": "n1", "object": "n2" } }
} } }
# TRAPI 1.1.0
input_query_graph = { "message": { "query_graph": {
"nodes": { "n1": { "categories": [ "biolink:ChemicalEntity" ] }, "n2": { "ids": [ "UMLS:C0002395" ] } },
"edges": { "e1": { "predicates": [ "biolink:clinically_tested_approved_unknown_phase" ], "subject": "n1", "object": "n2" } }
} } }
#### Create a template Message
response = ARAXResponse()
messenger = ARAXMessenger()
messenger.create_envelope(response)
message = ARAXMessenger().from_dict(input_query_graph['message'])
response.envelope.message.query_graph = message.query_graph
interpreter = ARAXQueryGraphInterpreter()
interpreter.translate_to_araxi(response)
if response.status != 'OK':
print(response.show(level=ARAXResponse.DEBUG))
return response
araxi_commands = response.data['araxi_commands']
for cmd in araxi_commands:
print(f" - {cmd}")
#### Show the final result
print('-------------------------')
print(response.show(level=ARAXResponse.DEBUG))
print(json.dumps(message.to_dict(),sort_keys=True,indent=2))
