def QGI_test3(): input_query_graph = { "message": { "query_graph": { "nodes": { "n00": { "id": "MONDO:0002715" }, "n01": { "category": "biolink:ChemicalSubstance" }, "n02": { "category": "biolink:Gene" } }, "edges": { "e00": { "predicate": "biolink:correlated_with", "subject": "n00", "object": "n01" }, "e01": { "predicate": "biolink:related_to", "subject": "n01", "object": "n02" } } } } } #### Create a template Message response = ARAXResponse() messenger = ARAXMessenger() messenger.create_envelope(response) message = ARAXMessenger().from_dict(input_query_graph['message']) response.envelope.message.query_graph = message.query_graph interpreter = ARAXQueryGraphInterpreter() interpreter.translate_to_araxi(response) if response.status != 'OK': print(response.show(level=ARAXResponse.DEBUG)) return response araxi_commands = response.data['araxi_commands'] for cmd in araxi_commands: print(f" - {cmd}") #### Show the final result print('-------------------------') print(response.show(level=ARAXResponse.DEBUG)) print(json.dumps(message.to_dict(), sort_keys=True, indent=2))
def QGI_test2(): #### Set example query_graph # TRAPI 0.9.2 input_query_graph = { "message": { "query_graph": { "nodes": [ { "id": "n1", "category": "chemical_substance" }, { "id": "n2", "curie": "UMLS:C0002395" } ], "edges": [ { "id": "e1", "predicate": "clinically_tested_approved_unknown_phase", "source_id": "n1", "target_id": "n2" } ] } } } # TRAPI 1.0.0 input_query_graph = { "message": { "query_graph": { "nodes": { "n1": { "category": "biolink:ChemicalEntity" }, "n2": { "id": "UMLS:C0002395" } }, "edges": { "e1": { "predicate": "clinically_tested_approved_unknown_phase", "subject": "n1", "object": "n2" } } } } } # TRAPI 1.1.0 input_query_graph = { "message": { "query_graph": { "nodes": { "n1": { "categories": [ "biolink:ChemicalEntity" ] }, "n2": { "ids": [ "UMLS:C0002395" ] } }, "edges": { "e1": { "predicates": [ "biolink:clinically_tested_approved_unknown_phase" ], "subject": "n1", "object": "n2" } } } } } #### Create a template Message response = ARAXResponse() messenger = ARAXMessenger() messenger.create_envelope(response) message = ARAXMessenger().from_dict(input_query_graph['message']) response.envelope.message.query_graph = message.query_graph interpreter = ARAXQueryGraphInterpreter() interpreter.translate_to_araxi(response) if response.status != 'OK': print(response.show(level=ARAXResponse.DEBUG)) return response araxi_commands = response.data['araxi_commands'] for cmd in araxi_commands: print(f" - {cmd}") #### Show the final result print('-------------------------') print(response.show(level=ARAXResponse.DEBUG)) print(json.dumps(message.to_dict(),sort_keys=True,indent=2))