def loadExonValidation(infiles, outfile):
''' load individual and merged exon validation stats
For each sample, the exon validation stats are loaded into a table
named by sample and mapper
[sample]_[mapper]_overrun
The merge alignment stats for all samples are merged and loaded
into single table called exon_validation
Parameters
----------
infiles : list
Input filenames with exon validation stats
outfile : str
Output filename
'''
suffix = ".exon.validation.tsv.gz"
P.mergeAndLoad(infiles, outfile, suffix=suffix)
for infile in infiles:
track = P.snip(infile, suffix)
o = "%s_overrun.load" % track
P.load(infile + ".overrun.gz", o)
def loadExonValidation(infiles, outfile):
''' load individual and merged exon validation stats
For each sample, the exon validation stats are loaded into a table
named by sample and mapper
[sample]_[mapper]_overrun
The merge alignment stats for all samples are merged and loaded
into single table called exon_validation
Parameters
----------
infiles : list
Input filenames with exon validation stats
outfile : str
Output filename
'''
suffix = ".exon.validation.tsv.gz"
P.mergeAndLoad(infiles, outfile, suffix=suffix)
for infile in infiles:
track = P.snip(infile, suffix)
o = "%s_overrun.load" % track
P.load(infile + ".overrun.gz", o)
def loadCpGCoverage(infiles, outfile):
'''load cpg coverag data.'''
P.mergeAndLoad(infiles,
outfile,
regex="/(.*).prep.cpg_coverage.gz",
row_wise=False)
def loadHypergeometricResultsSummary(infiles, outfile):
'''load GO summary results.'''
infiles = glob.glob("hypergeometric.dir/*/*.parameters")
P.mergeAndLoad(infiles, outfile)
def loadCpGCoverage(infiles, outfile):
'''load cpg coverag data.'''
P.mergeAndLoad(infiles, outfile, regex="/(.*).prep.cpg_coverage.gz",
row_wise=False)
def loadHypergeometricResultsSummary(infiles, outfile):
'''load GO summary results.'''
infiles = glob.glob("hypergeometric.dir/*/*.parameters")
P.mergeAndLoad(infiles, outfile)
