def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginExecAutoPROCv1_0.configure")
self.maxNoProcessors = self.config.get("maxNoProcessors", self.maxNoProcessors)
self.pathToNeggiaPlugin = self.config.get("pathToNeggiaPlugin")
self.doScaleWithXscale = self.config.get("scaleWithXscale", self.doScaleWithXscale)
self.rotationAxis = self.config.get("rotationAxis", self.rotationAxis)
def testGenerateExecutableScript(self):
listCommands = ['COMMAND1', 'COMMAND2 BANANA']
edPluginExecProcessScript = EDPluginExecProcessScript()
edPluginExecProcessScript.setScriptShell("/bin/bash")
edPluginExecProcessScript.setScriptBaseName("TestCaseGenerateScript")
edPluginExecProcessScript.setListCommandExecution(listCommands)
edPluginExecProcessScript.setRequireCCP4(True)
edPluginExecProcessScript.setSetupCCP4("/usr/local/xtal/ccp4-6.0.2/include/ccp4.setup-bash")
edPluginExecProcessScript.setScriptExecutable("cat")
edPluginExecProcessScript.configure()
strScript = edPluginExecProcessScript.prepareScript()
edPluginExecProcessScript.writeExecutableScript(strScript)
strScriptFileName = edPluginExecProcessScript.getScriptFileName()
strScriptFromFile = edPluginExecProcessScript.readProcessFile(strScriptFileName)
lstScriptReference = ["#!/bin/bash",
"cd %s" % edPluginExecProcessScript.getWorkingDirectory(),
". /usr/local/xtal/ccp4-6.0.2/include/ccp4.setup-bash",
"cat > TestCaseGenerateScript.log 2> TestCaseGenerateScript.err << EOF-EDPluginExecProcessScript &",
"COMMAND1",
"COMMAND2 BANANA",
"EOF-EDPluginExecProcessScript",
"ednaJobPid=$!",
"ednaJobHostName=$(hostname)",
'echo "$ednaJobHostName $ednaJobPid" > %s' % edPluginExecProcessScript.getPathToHostNamePidFile(),
"wait $ednaJobPid",
""]
strScriptReference = EDUtilsPlatform.linesep.join(lstScriptReference)
EDAssert.equal(strScriptFromFile, strScriptReference)
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginExecXia2DIALSv1_0.configure")
self.maxNoProcessors = self.config.get("maxNoProcessors", self.maxNoProcessors)
if EDUtilsPath.isEMBL():
self.maxNoProcessors = multiprocessing.cpu_count() / 2
self.goniometerAxes = self.config.get("goniometerAxes", self.goniometerAxes)
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginExecXia2DIALSv1_0.configure")
self.maxNoProcessors = self.config.get("maxNoProcessors",
self.maxNoProcessors)
self.goniometerAxes = self.config.get("goniometerAxes",
self.goniometerAxes)
def testGenerateExecutableScript(self):
listCommands = ['COMMAND1', 'COMMAND2 BANANA']
edPluginExecProcessScript = EDPluginExecProcessScript()
edPluginExecProcessScript.setScriptShell("/bin/bash")
edPluginExecProcessScript.setScriptBaseName("TestCaseGenerateScript")
edPluginExecProcessScript.setListCommandExecution(listCommands)
edPluginExecProcessScript.setRequireCCP4(True)
edPluginExecProcessScript.setSetupCCP4("/usr/local/xtal/ccp4-6.0.2/include/ccp4.setup-bash")
edPluginExecProcessScript.setScriptExecutable("cat")
edPluginExecProcessScript.configure()
strScript = edPluginExecProcessScript.prepareScript()
edPluginExecProcessScript.writeExecutableScript(strScript)
strScriptFileName = edPluginExecProcessScript.getScriptFileName()
strScriptFromFile = edPluginExecProcessScript.readProcessFile(strScriptFileName)
lstScriptReference = ["#!/bin/bash",
"cd %s" % edPluginExecProcessScript.getWorkingDirectory(),
". /usr/local/xtal/ccp4-6.0.2/include/ccp4.setup-bash",
"cat > TestCaseGenerateScript.log 2> TestCaseGenerateScript.err << EOF-EDPluginExecProcessScript &",
"COMMAND1",
"COMMAND2 BANANA",
"EOF-EDPluginExecProcessScript",
"ednaJobPid=$!",
"ednaJobHostName=$(hostname)",
'echo "$ednaJobHostName $ednaJobPid" > %s' % edPluginExecProcessScript.getPathToHostNamePidFile(),
"wait $ednaJobPid",
""]
strScriptReference = EDUtilsPlatform.linesep.join(lstScriptReference)
EDAssert.equal(strScriptFromFile, strScriptReference)
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginDistlSignalStrengthThinClientv1_1.configure")
self.strHostName = self.config.get(
self.CONF_DISTL_SIGNAL_STRENGTH_SERVER_HOST, "localhost")
self.iPortNumber = self.config.get(
self.CONF_DISTL_SIGNAL_STRENGTH_SERVER_PORT, 8125)
def configure(self):
"""
"""
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginBestv1_1.configure")
self.setRequireCCP4(True)
strScriptExecutable = self.getScriptExecutable()
self.DEBUG("EDPluginBestv1_1.configure: Script Executable: " +
strScriptExecutable)
strBestScriptHome = os.path.dirname(strScriptExecutable)
strBestHome = None
pluginConfiguration = self.getConfiguration()
if (pluginConfiguration == None):
strBestHome = strBestScriptHome
else:
strBestHome = EDConfiguration.getStringParamValue(
pluginConfiguration, self.strCONF_BEST_HOME_LABEL)
if (strBestHome == None):
strBestHome = strBestScriptHome
self.setBestHome(strBestHome)
self.DEBUG("EDPluginBestv1_1.configure: Best Home: " + strBestHome)
self.setCommandBestHome("export besthome=" + self.getBestHome())
def configure(self):
"""
Here we override the EDPluginExecProcessScript.configure method BEFORE calling it.
we define especially the executable that should come from the input-XML and not from the Site-XML.
This is the main difference with EDPluginExecProcessScript.
The configure method modifies also the stdout from .log to .out ... if we are re-using stdout for the result
"""
self.DEBUG("EDPluginExecCommandLinev10.configure")
self.setScriptExecutable(self.dataInput.commandLineProgram.path.value)
if self.dataInput.getCommandLineOptions():
strOptions = self.dataInput.getCommandLineOptions(
).value + " " + self.dataInput.inputFileName.path.value
else:
strOptions = self.dataInput.inputFileName.path
self.setScriptCommandline(strOptions)
if self.dataInput.getOutfileFromStdout() is not None:
if self.dataInput.getOutfileFromStdout().value:
if (self.getScriptBaseName() == None):
self.setScriptBaseName(self.getBaseName())
if (self.getScriptLogFileName() == None):
self.setScriptLogFileName(self.getScriptBaseName() +
".out")
# And finally we call the configure method of the parent.
EDPluginExecProcessScript.configure(self)
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginExecMinimalXdsv1_0.configure")
self.maxNoProcessors = self.config.get("maxNoProcessors",
self.maxNoProcessors)
self.maxNoJobs = self.config.get("maxNoJobs", self.maxNoJobs)
self.pathToNeggiaPlugin = self.config.get("pathToNeggiaPlugin")
def configure(self):
"""
Here we override the EDPluginExecProcessScript.configure method BEFORE calling it.
we define especially the executable that should come from the input-XML and not from the Site-XML.
This is the main difference with EDPluginExecProcessScript.
The configure method modifies also the stdout from .log to .out ... if we are re-using stdout for the result
"""
self.DEBUG("EDPluginExecCommandLinev10.configure")
self.setScriptExecutable(self.dataInput.commandLineProgram.path.value)
if self.dataInput.getCommandLineOptions() :
strOptions = self.dataInput.getCommandLineOptions().value + " " + self.dataInput.inputFileName.path.value
else:
strOptions = self.dataInput.inputFileName.path
self.setScriptCommandline(strOptions)
if self.dataInput.getOutfileFromStdout() is not None:
if self.dataInput.getOutfileFromStdout().value :
if (self.getScriptBaseName() == None):
self.setScriptBaseName(self.getBaseName())
if (self.getScriptLogFileName() == None):
self.setScriptLogFileName(self.getScriptBaseName() + ".out")
# And finally we call the configure method of the parent.
EDPluginExecProcessScript.configure(self)
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginMOSFLMv10.configure")
self.setRequireCCP4(True)
self.setScriptCommandline(" DNA " + self.getScriptBaseName() + "_dnaTables.xml")
# Check for reversephi configuration option
self.bReversephi = self.config.get("reversephi")
self.strRaster = self.config.get("raster")
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginExecXia2DIALSv1_0.configure")
self.maxNoProcessors = self.config.get("maxNoProcessors",
self.maxNoProcessors)
if EDUtilsPath.isEMBL():
self.maxNoProcessors = multiprocessing.cpu_count() / 2
self.goniometerAxes = self.config.get("goniometerAxes",
self.goniometerAxes)
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginXOalignv1_0.configure")
self.strOmegaRot = self.config.get("OmegaRot")
self.strKappaRot = self.config.get("KappaRot")
self.strPhiRot = self.config.get("PhiRot")
self.strName = self.config.get("Name")
self.fMaxKappaAngle = self.config.get("maxKappaAngle", self.fMaxKappaAngle)
self.fMinKappaAngle = self.config.get("minKappaAngle", self.fMinKappaAngle)
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginMOSFLMv10.configure")
self.setRequireCCP4(True)
self.setScriptCommandline(" DNA " + self.getScriptBaseName() +
"_dnaTables.xml")
# Check for reversephi configuration option
self.bReversephi = self.config.get("reversephi")
self.strRaster = self.config.get("raster")
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginXOalignv1_0.configure")
self.ixMin = self.config.get("ix_min", None)
self.iyMin = self.config.get("iy_min", None)
self.ixMax = self.config.get("ix_max", None)
self.iyMax = self.config.get("iy_max", None)
# Eventual bad zones
self.strBad_zona = self.config.get("bad_zona", None)
def configure(self):
EDPluginExecProcessScript.configure(self)
EDVerbose.DEBUG("EDPluginDistlSignalStrengthThinClientv1_1.configure")
strHostName = self.getStringConfigurationParameterValue(self.CONF_DISTL_SIGNAL_STRENGTH_SERVER_HOST)
if strHostName is not None:
self.strHostName = strHostName
iPortNumber = self.getIntegerConfigurationParameterValue(self.CONF_DISTL_SIGNAL_STRENGTH_SERVER_PORT)
if iPortNumber is not None:
self.iPortNumber = iPortNumber
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginXOalignv1_0.configure")
self.ixMin = self.config.get("ix_min", None)
self.iyMin = self.config.get("iy_min", None)
self.ixMax = self.config.get("ix_max", None)
self.iyMax = self.config.get("iy_max", None)
# Eventual bad zones
self.strBad_zona = self.config.get("bad_zona", None)
self.library_cbf = self.config.get(self.getLibraryName("cbf"))
self.library_h5 = self.config.get(self.getLibraryName("h5"))
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginDistlSignalStrengthThinClientv1_1.configure")
strHostName = self.getStringConfigurationParameterValue(
self.CONF_DISTL_SIGNAL_STRENGTH_SERVER_HOST)
if strHostName is not None:
self.strHostName = strHostName
iPortNumber = self.getIntegerConfigurationParameterValue(
self.CONF_DISTL_SIGNAL_STRENGTH_SERVER_PORT)
if iPortNumber is not None:
self.iPortNumber = iPortNumber
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginMOSFLMv10.configure")
self.setRequireCCP4(True)
self.setScriptCommandline(" DNA " + self.getScriptBaseName() + "_dnaTables.xml")
# Check for reversephi configuration option
strReversephi = self.getStringConfigurationParameterValue("reversephi")
if strReversephi is not None:
if strReversephi.lower() == "true":
self.bReversephi = True
self.strRaster = self.getStringConfigurationParameterValue("raster")
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginMOSFLMv10.configure")
self.setRequireCCP4(True)
self.setScriptCommandline(" DNA " + self.getScriptBaseName() +
"_dnaTables.xml")
# Check for reversephi configuration option
strReversephi = self.getStringConfigurationParameterValue("reversephi")
if strReversephi is not None:
if strReversephi.lower() == "true":
self.bReversephi = True
self.strRaster = self.getStringConfigurationParameterValue("raster")
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginLabelitv1_1.configure")
strPathToLabelitSetpathScript = self.config.get(self.CONF_PATH_TO_LABELIT_SETPATH_SCRIPT)
if(strPathToLabelitSetpathScript == None):
strErrorMessage = "EDPluginLabelitv1_1.configure : Configuration parameter missing: " + \
EDPluginLabelitv1_1.CONF_PATH_TO_LABELIT_SETPATH_SCRIPT
self.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
else:
self.setPathToLabelitSetpathScript(strPathToLabelitSetpathScript)
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginBestv1_3.configure")
self.setRequireCCP4(True)
strScriptExecutable = self.getScriptExecutable()
self.DEBUG("EDPluginBestv1_3.configure: Script Executable: " + strScriptExecutable)
strBestScriptHome = EDUtilsPath.getFolderName(strScriptExecutable)
strBestHome = self.config.get(self.strCONF_BEST_HOME_LABEL, strBestScriptHome)
self.setBestHome(strBestHome)
self.DEBUG("EDPluginBestv1_3.configure: Best Home: " + strBestHome)
self.setCommandBestHome("export besthome=" + self.getBestHome())
strVersion = self.config.get(self.CONF_EXEC_PROCESS_SCRIPT_VERSION_STRING, "Unknown")
def configure(self):
"""
Gets the name (with full path) of the bash script to run
"""
EDPluginExecProcessScript.configure(self)
self.setRequireCCP4(True)
strScriptExecutable = self.getScriptExecutable()
if (strScriptExecutable == None):
strErrorMessage = EDMessage.ERROR_EXECUTION_03 % ("EDPluginMxv1ParamsToXMLv1_0.configure", self.getClassName(), \
"Configuration parameter missing: strScriptExecutable")
self.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
raise RuntimeError, strErrorMessage
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginMOSFLMv10.configure")
self.setRequireCCP4(True)
self.setScriptCommandline(" DNA " + self.getScriptBaseName() + "_dnaTables.xml")
# Check for reversephi configuration option
self.bReversephi = self.config.get("reversephi")
self.fPolarization = self.config.get("polarization")
if self.fPolarization is not None:
self.fPolarization = float(self.fPolarization)
self.iOmega = self.config.get("omega")
if self.iOmega is not None:
self.iOmega = int(self.iOmega)
self.strRaster = self.config.get("raster")
def configure(self):
EDPluginExecProcessScript.configure(self)
EDVerbose.DEBUG("EDPluginControlLabelitv10.configure")
xsPluginItem = self.getConfiguration()
if (xsPluginItem == None):
EDVerbose.warning("EDPluginControlLabelitv10.configure: No Labelit plugin item defined.")
xsPluginItem = XSPluginItem()
strPathToLabelitSetpathScript = EDConfiguration.getStringParamValue(xsPluginItem, self.strCONF_PATH_TO_LABELIT_SETPATH_SCRIPT)
if(strPathToLabelitSetpathScript == None):
errorMessage = EDMessage.ERROR_EXECUTION_03 % ('EDPluginControlLabelitv10.configure', self.getClassName(), "Configuration parameter missing: " + self.strCONF_PATH_TO_LABELIT_SETPATH_SCRIPT)
EDVerbose.error(errorMessage)
self.addErrorMessage(errorMessage)
raise RuntimeError, errorMessage
else:
self.setPathToLabelitSetpathScript(strPathToLabelitSetpathScript)
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginControlLabelitv10.configure")
xsPluginItem = self.getConfiguration()
if (xsPluginItem == None):
self.warning("EDPluginControlLabelitv10.configure: No Labelit plugin item defined.")
xsPluginItem = XSPluginItem()
strPathToLabelitSetpathScript = EDConfiguration.getStringParamValue(xsPluginItem, self.strCONF_PATH_TO_LABELIT_SETPATH_SCRIPT)
if(strPathToLabelitSetpathScript == None):
errorMessage = EDMessage.ERROR_EXECUTION_03 % ('EDPluginControlLabelitv10.configure', self.getClassName(), "Configuration parameter missing: " + self.strCONF_PATH_TO_LABELIT_SETPATH_SCRIPT)
self.error(errorMessage)
self.addErrorMessage(errorMessage)
raise RuntimeError, errorMessage
else:
self.setPathToLabelitSetpathScript(strPathToLabelitSetpathScript)
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginMOSFLMv10.configure")
self.setRequireCCP4(True)
self.setScriptCommandline(" DNA " + self.getScriptBaseName() +
"_dnaTables.xml")
# Check for reversephi configuration option
self.bReversephi = self.config.get("reversephi")
self.fPolarization = self.config.get("polarization")
if self.fPolarization is not None:
self.fPolarization = float(self.fPolarization)
self.iOmega = self.config.get("omega")
if self.iOmega is not None:
self.iOmega = int(self.iOmega)
self.strRaster = self.config.get("raster")
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginBestv1_3.configure")
self.setRequireCCP4(True)
strScriptExecutable = self.getScriptExecutable()
self.DEBUG("EDPluginBestv1_3.configure: Script Executable: " +
strScriptExecutable)
strBestScriptHome = EDUtilsPath.getFolderName(strScriptExecutable)
strBestHome = self.config.get(self.strCONF_BEST_HOME_LABEL,
strBestScriptHome)
self.setBestHome(strBestHome)
self.DEBUG("EDPluginBestv1_3.configure: Best Home: " + strBestHome)
self.setCommandBestHome("export besthome=" + self.getBestHome())
strVersion = self.config.get(
self.CONF_EXEC_PROCESS_SCRIPT_VERSION_STRING, "Unknown")
def configure(self):
EDPluginExecProcessScript.configure(self)
EDVerbose.DEBUG("EDPluginMOSFLMv10.configure")
self.setRequireCCP4(True)
self.setScriptCommandline(" DNA " + self.getScriptBaseName() + "_dnaTables.xml")
# Check for reversephi configuration option
if self.getConfiguration():
xsDataStringParameter = EDConfiguration.getParamItem(self.getConfiguration(), "reversephi")
if xsDataStringParameter:
strReversephi = xsDataStringParameter.getValue()
if strReversephi is not None:
if strReversephi.lower() == "true":
self.bReversephi = True
xsDataStringParameterRaster = EDConfiguration.getParamItem(self.getConfiguration(), "raster")
if xsDataStringParameterRaster:
self.strRaster = xsDataStringParameterRaster.getValue()
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginLabelitv1_1.configure")
xsPluginItem = self.getConfiguration()
if (xsPluginItem == None):
self.warning("EDPluginLabelitv1_1.configure: No Labelit plugin item defined.")
xsPluginItem = XSPluginItem()
strPathToLabelitSetpathScript = EDConfiguration.getStringParamValue(xsPluginItem, \
EDPluginLabelitv1_1.CONF_PATH_TO_LABELIT_SETPATH_SCRIPT)
if(strPathToLabelitSetpathScript == None):
strErrorMessage = "EDPluginLabelitv1_1.configure : Configuration parameter missing: " + \
EDPluginLabelitv1_1.CONF_PATH_TO_LABELIT_SETPATH_SCRIPT
self.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
self.setFailure()
else:
self.setPathToLabelitSetpathScript(strPathToLabelitSetpathScript)
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginBestv1_2.configure")
self.setRequireCCP4(True)
strScriptExecutable = self.getScriptExecutable()
self.DEBUG("EDPluginBestv1_2.configure: Script Executable: " + strScriptExecutable)
strBestScriptHome = EDUtilsPath.getFolderName(strScriptExecutable)
strBestHome = self.config.get(self.strCONF_BEST_HOME_LABEL, strBestScriptHome)
self.setBestHome(strBestHome)
self.DEBUG("EDPluginBestv1_2.configure: Best Home: " + strBestHome)
self.setCommandBestHome("export besthome=" + self.getBestHome())
strVersion = self.config.get(self.CONF_EXEC_PROCESS_SCRIPT_VERSION_STRING, "Unknown")
# Check if version is higher than 4.1:
try:
if float(strVersion[8:11]) > 4.0:
self.bVersionHigherThan4_0 = True
except Exception, e:
pass
def configure(self):
"""
Gets the name (with full path) of the bash script to run
"""
EDPluginExecProcessScript.configure(self)
pluginConfiguration = self.getConfiguration()
self.setRequireCCP4(True)
if(pluginConfiguration == None):
EDVerbose.DEBUG("*** EDPluginMxv1ParamsToXMLv1_0.configure: pluginConfiguration is None, using default settings")
else:
EDVerbose.DEBUG("*** EDPluginMxv1ParamsToXMLv1_0.configure: pluginConfiguration found, using settings from there")
strScriptExecutable = self.getScriptExecutable()
if (strScriptExecutable == None):
strErrorMessage = EDMessage.ERROR_EXECUTION_03 % ("EDPluginMxv1ParamsToXMLv1_0.configure", self.getClassName(), \
"Configuration parameter missing: strScriptExecutable")
EDVerbose.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
raise RuntimeError, strErrorMessage
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginBestv1_2.configure")
self.setRequireCCP4(True)
strScriptExecutable = self.getScriptExecutable()
self.DEBUG("EDPluginBestv1_2.configure: Script Executable: " +
strScriptExecutable)
strBestScriptHome = EDUtilsPath.getFolderName(strScriptExecutable)
strBestHome = self.config.get(self.strCONF_BEST_HOME_LABEL,
strBestScriptHome)
self.setBestHome(strBestHome)
self.DEBUG("EDPluginBestv1_2.configure: Best Home: " + strBestHome)
self.setCommandBestHome("export besthome=" + self.getBestHome())
strVersion = self.config.get(
self.CONF_EXEC_PROCESS_SCRIPT_VERSION_STRING, "Unknown")
# Check if version is higher than 4.1:
try:
if float(strVersion[8:11]) > 4.0:
self.bVersionHigherThan4_0 = True
except Exception, e:
pass
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginBestv10.configure")
self.setRequireCCP4(True)
strScriptExecutable = self.getScriptExecutable()
self.DEBUG("EDPluginBestv10.configure: Script Executable: " + strScriptExecutable)
strBestScriptHome = os.path.dirname(strScriptExecutable)
strBestHome = None
pluginConfiguration = self.getConfiguration()
if(pluginConfiguration == None):
strBestHome = strBestScriptHome
else:
strBestHome = EDConfiguration.getStringParamValue(pluginConfiguration, self.strCONF_BEST_HOME_LABEL)
if(strBestHome == None):
strBestHome = strBestScriptHome
self.setBestHome(strBestHome)
self.DEBUG("EDPluginBestv10.configure: Best Home: " + strBestHome)
self.setCommandBestHome("export besthome=" + self.getBestHome())
def configure(self):
"""
Gets the name (with full path) of the bash script to run
"""
EDPluginExecProcessScript.configure(self)
pluginConfiguration = self.getConfiguration()
self.setRequireCCP4(True)
if (pluginConfiguration == None):
self.DEBUG(
"*** EDPluginMxv1ParamsToXMLv1_0.configure: pluginConfiguration is None, using default settings"
)
else:
self.DEBUG(
"*** EDPluginMxv1ParamsToXMLv1_0.configure: pluginConfiguration found, using settings from there"
)
strScriptExecutable = self.getScriptExecutable()
if (strScriptExecutable == None):
strErrorMessage = EDMessage.ERROR_EXECUTION_03 % ("EDPluginMxv1ParamsToXMLv1_0.configure", self.getClassName(), \
"Configuration parameter missing: strScriptExecutable")
self.error(strErrorMessage)
self.addErrorMessage(strErrorMessage)
raise RuntimeError, strErrorMessage
def configure(self):
EDPluginExecProcessScript.configure(self)
self.__strPathToXGeoCorr = self.getStringConfigurationParameterValue(
"x-geo_corr")
self.__strPathToYGeoCorr = self.getStringConfigurationParameterValue(
"y-geo_corr")
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginExecCrystFELIndexv1_0.configure")
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginExecXia2DIALSv1_0.configure")
self.maxNoProcessors = self.config.get("maxNoProcessors", self.maxNoProcessors)
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginExecXDSAPPv1_0.configure")
self.maxNoProcessors = self.config.get("maxNoProcessors", self.maxNoProcessors)
self.raxis = self.config.get("raxis", self.raxis)
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginExecCrystFELIndexv1_0.configure")
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginRaddosev10.configure")
self.setRequireCCP4(True)
def configure(self):
EDPluginExecProcessScript.configure(self)
def configure(self):
EDPluginExecProcessScript.configure(self)
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginExecCrystFELPartialatorv1_0.configure")
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginDistlSignalStrengthThinClientv1_1.configure")
self.strHostName = self.config.get(self.CONF_DISTL_SIGNAL_STRENGTH_SERVER_HOST, "localhost")
self.iPortNumber = self.config.get(self.CONF_DISTL_SIGNAL_STRENGTH_SERVER_PORT, 8125)
def configure(self):
EDPluginExecProcessScript.configure(self)
self.__strPathToXGeoCorr = self.config.get("x-geo_corr", None)
self.__strPathToYGeoCorr = self.config.get("y-geo_corr", None)
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginExecXDSAPPv1_0.configure")
self.maxNoProcessors = self.config.get("maxNoProcessors",
self.maxNoProcessors)
self.raxis = self.config.get("raxis", self.raxis)
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginExecMinimalXdsv1_0.configure")
self.maxNoProcessors = self.config.get("maxNoProcessors", self.maxNoProcessors)
def configure(self):
EDPluginExecProcessScript.configure(self)
self.DEBUG("EDPluginExecCrystFELPartialatorv1_0.configure")
def configure(self):
EDPluginExecProcessScript.configure(self)
self.__strPathToXGeoCorr = self.getStringConfigurationParameterValue("x-geo_corr")
self.__strPathToYGeoCorr = self.getStringConfigurationParameterValue("y-geo_corr")
def configure(self):
EDPluginExecProcessScript.configure(self)
EDVerbose.DEBUG("EDPluginRaddosev10.configure")
self.setRequireCCP4(True)
