def testGenerateScript(self):
listCommandPreExecution = ['PRE-EXECUTION1', 'PRE-EXECUTION2 PATATE']
listCommandExecution = ['COMMAND1', 'COMMAND2 BANANA']
listCommandPostExecution = ['POST-EXECUTION1', 'POST-EXECUTION2 FRAISE']
edPluginExecProcessScript = EDPluginExecProcessScript()
edPluginExecProcessScript.setScriptShell("/bin/bash")
edPluginExecProcessScript.setScriptBaseName("TestCaseGenerateScript")
edPluginExecProcessScript.setListCommandPreExecution(listCommandPreExecution)
edPluginExecProcessScript.setListCommandExecution(listCommandExecution)
edPluginExecProcessScript.setListCommandPostExecution(listCommandPostExecution)
edPluginExecProcessScript.setRequireCCP4(True)
edPluginExecProcessScript.setSetupCCP4("/usr/local/xtal/ccp4-6.0.2/include/ccp4.setup-bash")
edPluginExecProcessScript.setScriptExecutable("cat")
edPluginExecProcessScript.configure()
strScript = edPluginExecProcessScript.prepareScript()
lstScriptReference = ["#!/bin/bash",
"cd %s" % edPluginExecProcessScript.getWorkingDirectory(),
". /usr/local/xtal/ccp4-6.0.2/include/ccp4.setup-bash",
"PRE-EXECUTION1",
"PRE-EXECUTION2 PATATE",
"cat > TestCaseGenerateScript.log 2> TestCaseGenerateScript.err << EOF-EDPluginExecProcessScript &",
"COMMAND1",
"COMMAND2 BANANA",
"EOF-EDPluginExecProcessScript",
"ednaJobPid=$!",
"ednaJobHostName=$(hostname)",
'echo "$ednaJobHostName $ednaJobPid" > %s' % edPluginExecProcessScript.getPathToHostNamePidFile(),
'wait $ednaJobPid',
'POST-EXECUTION1',
'POST-EXECUTION2 FRAISE',
'']
strScriptReference = EDUtilsPlatform.linesep.join(lstScriptReference)
EDAssert.equal(strScriptReference, strScript)
def testGenerateScript(self):
listCommandPreExecution = ['PRE-EXECUTION1', 'PRE-EXECUTION2 PATATE']
listCommandExecution = ['COMMAND1', 'COMMAND2 BANANA']
listCommandPostExecution = ['POST-EXECUTION1', 'POST-EXECUTION2 FRAISE']
edPluginExecProcessScript = EDPluginExecProcessScript()
edPluginExecProcessScript.setScriptShell("/bin/bash")
edPluginExecProcessScript.setScriptBaseName("TestCaseGenerateScript")
edPluginExecProcessScript.setListCommandPreExecution(listCommandPreExecution)
edPluginExecProcessScript.setListCommandExecution(listCommandExecution)
edPluginExecProcessScript.setListCommandPostExecution(listCommandPostExecution)
edPluginExecProcessScript.setRequireCCP4(True)
edPluginExecProcessScript.setSetupCCP4("/usr/local/xtal/ccp4-6.0.2/include/ccp4.setup-bash")
edPluginExecProcessScript.setScriptExecutable("cat")
edPluginExecProcessScript.configure()
strScript = edPluginExecProcessScript.prepareScript()
lstScriptReference = ["#!/bin/bash",
"cd %s" % edPluginExecProcessScript.getWorkingDirectory(),
". /usr/local/xtal/ccp4-6.0.2/include/ccp4.setup-bash",
"PRE-EXECUTION1",
"PRE-EXECUTION2 PATATE",
"cat > TestCaseGenerateScript.log 2> TestCaseGenerateScript.err << EOF-EDPluginExecProcessScript &",
"COMMAND1",
"COMMAND2 BANANA",
"EOF-EDPluginExecProcessScript",
"ednaJobPid=$!",
"ednaJobHostName=$(hostname)",
'echo "$ednaJobHostName $ednaJobPid" > %s' % edPluginExecProcessScript.getPathToHostNamePidFile(),
'wait $ednaJobPid',
'POST-EXECUTION1',
'POST-EXECUTION2 FRAISE',
'']
strScriptReference = EDUtilsPlatform.linesep.join(lstScriptReference)
EDAssert.equal(strScriptReference, strScript)
