def preProcess(self):
"""
Scans the command line.
"""
EDVerbose.DEBUG("EDTestLauncher.preProcess")
edCommandLine = EDCommandLine(sys.argv)
EDVerbose.log(self.getEdCommandLine().getCommandLine())
self.processCommandLineDebugVerboseLogFile()
bContinue = True
strTestName = edCommandLine.getArgument(EDTestLauncher.TEST_LABEL)
EDVerbose.DEBUG("EDTestLauncher.preProcess: test name = %r" % strTestName)
if (strTestName is None):
EDVerbose.screen("ERROR - no --test argument found")
bContinue = False
else:
self.__edTestCase = EDUtilsTest.getFactoryPluginTest().loadPlugin(strTestName)
if (bContinue):
# Determine the base directory
if(self.getBaseDir() is None):
self.processCommandLineBaseDirectory()
# Create the application working directory
strApplicationInstanceName = strTestName + "_" + time.strftime("%Y%m%d-%H%M%S", time.localtime())
if(self.getWorkingDir() is None):
self.setWorkingDir(strApplicationInstanceName)
self.createApplicationWorkingDirectory()
# Set the name of the log file
EDVerbose.setLogFileName(os.path.join(self.getBaseDir(), strApplicationInstanceName + ".log"))
# The check for --quiet and --DEBUG should ideally be placed elsewhere,
# for example in EDApplication.
if (edCommandLine.existCommand(EDTestLauncher.QUIET_LABEL)):
EDVerbose.setVerboseOff()
EDVerbose.setTestOff()
if (edCommandLine.existCommand(EDApplication.DEBUG_PARAM_LABEL_1) or \
edCommandLine.existCommand(EDApplication.DEBUG_PARAM_LABEL_2)):
EDVerbose.setVerboseDebugOn()
EDVerbose.DEBUG("EDTestLauncher.preProcess: Debug mode")
################################################################################
# AutoBuilder for Numpy, PIL and Fabio
################################################################################
architecture = EDUtilsPlatform.architecture
fabioPath = os.path.join(EDUtilsPath.EDNA_HOME, "libraries", "FabIO-0.0.7",
architecture)
imagingPath = os.path.join(EDUtilsPath.EDNA_HOME, "libraries",
"20091115-PIL-1.1.7", architecture)
numpyPath = os.path.join(EDUtilsPath.EDNA_HOME, "libraries",
"20090405-Numpy-1.3", architecture)
Image = EDFactoryPluginStatic.preImport("Image", imagingPath)
numpy = EDFactoryPluginStatic.preImport("numpy", numpyPath)
fabio = EDFactoryPluginStatic.preImport("fabio", fabioPath)
EDVerbose.setTestOff()
class EDPluginControlAlignStackv1_0(EDPluginControl):
"""
This control plugin aligns a stack on images in a single HDF5 3D-structure
"""
__iRefFrame = None
__dictRelShift = {
} #key=frame number N, value= 2-tuple of shift relative to frame N-1
__dictAbsShift = {
} #key=frame number N, value= 2-tuple of shift relative to frame iRefFrame
__semaphore = Semaphore()
MaxOffset = None
def __init__(self):
EDFactoryPluginStatic.loadModule("EDPluginHDF5StackImagesv10")
from EDPluginHDF5 import EDPluginHDF5
################################################################################
# AutoBuilder for Numpy, PIL and Fabio
################################################################################
architecture = EDUtilsPlatform.architecture
fabioPath = os.path.join(EDUtilsPath.EDNA_HOME, "libraries", "FabIO-0.0.7", architecture)
imagingPath = os.path.join(EDUtilsPath.EDNA_HOME, "libraries", "20091115-PIL-1.1.7", architecture)
numpyPath = os.path.join(EDUtilsPath.EDNA_HOME, "libraries", "20090405-Numpy-1.3", architecture)
Image = EDFactoryPluginStatic.preImport("Image", imagingPath)
numpy = EDFactoryPluginStatic.preImport("numpy", numpyPath)
fabio = EDFactoryPluginStatic.preImport("fabio", fabioPath)
EDVerbose.setTestOff()
class EDPluginControlAlignStackv1_0(EDPluginControl):
"""
This control plugin aligns a stack on images in a single HDF5 3D-structure
"""
__iRefFrame = None
__dictRelShift = {}#key=frame number N, value= 2-tuple of shift relative to frame N-1
__dictAbsShift = {}#key=frame number N, value= 2-tuple of shift relative to frame iRefFrame
__semaphore = Semaphore()
MaxOffset = None
def __init__(self):
"""
"""
