def iterate_tree(standard_item, data_item):
for n, element in enumerate(
sorted(data_item.children, key=lambda x: x.name)):
gene_item = LinkedItem(element.name, element)
gene_item.setEditable(False)
standard_item.setChild(n, gene_item)
iterate_tree(gene_item, element)
def add_gene(self, gene):
""" Buffer the addition of a gene to the genegroup and change the model"""
table_item, model_item = self.get_selected_item()
new_item = LinkedItem(text=gene.id, link=gene)
new_item.setEditable(False)
table_item.appendRow(new_item)
self.cached_actions.append((model_item, "addition", gene))
self.changed.emit()
def iterate_tree(standard_item, data_item):
for n, element in enumerate(data_item._children):
if isinstance(element, Gene):
gene_item = LinkedItem(element.id, element)
gene_item.setEditable(False)
standard_item.setChild(n, gene_item)
elif isinstance(element, GeneGroup):
new_item = LinkedItem(str(element.type).upper(), element)
new_item.setEditable(False)
iterate_tree(new_item, element)
standard_item.setChild(n, new_item)
def add_genegroup(self):
""" Buffer the addition of a genegroup to the genegroup and change the model"""
# Get current item
table_item, model_item = self.get_selected_item()
new_group = GeneGroup()
new_item = LinkedItem(text=str(new_group.type).upper(), link=new_group)
new_item.setEditable(False)
table_item.appendRow(new_item)
# Buffer the function call for when user accepts dialog
self.cached_actions.append((model_item, "addition", new_group))
self.changed.emit()