def row_from_item(setting):
""" Get a row to be displayed in the table
Parameters
----------
setting : GEMEditor.data_classes.ReactionSetting
Returns
-------
list
"""
reaction_item = LinkedItem(setting.reaction.id, setting.reaction)
reaction_item.setFlags(Qt.ItemIsEnabled | Qt.ItemIsSelectable)
upper_bound_item = QStandardItem()
upper_bound_item.setData(setting.upper_bound, 2)
lower_bound_item = QStandardItem()
lower_bound_item.setData(setting.lower_bound, 2)
objective_item = QStandardItem()
objective_item.setData(setting.objective_coefficient, 2)
return [
reaction_item, lower_bound_item, upper_bound_item, objective_item
]
def row_from_item(setting):
""" Get a row to be displayed in the table
Parameters
----------
setting : GEMEditor.data_classes.GeneSetting
Returns
-------
list
"""
gene_item = LinkedItem(setting.gene.id, setting.gene)
gene_item.setFlags(Qt.ItemIsEnabled | Qt.ItemIsSelectable)
if setting.activity is True:
state = "active"
elif setting.activity is False:
state = "inactive"
else:
raise ValueError("Unknown state '{}' for gene activity.".format(
str(setting.gene.functional)))
activity_item = QStandardItem(state)
return [gene_item, activity_item]
def row_from_item(outcome):
reaction_item = LinkedItem(outcome.reaction.id, outcome.reaction)
reaction_item.setFlags(Qt.ItemIsEnabled | Qt.ItemIsSelectable)
operator_item = QStandardItem(outcome.operator)
flux_value_item = QStandardItem()
flux_value_item.setData(outcome.value, 2)
return [reaction_item, operator_item, flux_value_item]
def row_from_item(input_tuple):
""" Return the table row from an input item """
metabolite, stoichiometry = input_tuple
id_item = LinkedItem(metabolite.id, metabolite)
id_item.setFlags(Qt.ItemIsEnabled | Qt.ItemIsSelectable)
id_item.setToolTip("Formula: {}\nCharge: {}".format(
metabolite.formula, metabolite.charge))
value_item = LinkedItem(link=metabolite)
value_item.setData(stoichiometry, 2)
return [id_item, value_item]