def readTestingData(testDataFname, fieldMaps):
"""
read test data
@param testDataFname: name of the testing data file
@return: (DatasetPair with just X, sampleWeights)
"""
fieldNames = ['pclass', 'name', 'sex', 'age', 'sibsp', 'parch', 'ticket', 'fare', 'cabin', 'embarked','weight']
nameMap = dict(zip(fieldNames, range(len(fieldNames))))
dataTypes = np.array([np.int, '|S82', '|S82', np.float, np.int, np.int, '|S82', np.float, '|S82', '|S82', np.int])
outputFieldNames = []
data = map(list, csv2dict(testDataFname, hasHeader=True, dataTypes=dataTypes, colIndices=None, defaultNumValue=float('nan')))
all_x = list()
# sample weights
sampleWeights = np.array(getCol(data, [nameMap['weight']]))
# attach numerical fields first
for name in ['pclass', 'age', 'sibsp', 'parch', 'fare']:
outputFieldNames.append(name)
all_x.append(getCol(data, [nameMap[name]]))
# attach text fields
for name in ['sex', 'name', 'ticket', 'cabin', 'embarked']:
outputFieldNames.append(name)
fieldMap = fieldMaps[name]
all_x.append([fieldMap[v] for v in getCol(data, [nameMap[name]])])
all_x = np.array(zip(*all_x))
return DatasetPair(all_x, fieldNames=outputFieldNames), sampleWeights
def compareResultsToTrueResults(testResults, trueResFname):
"""
compares results to true results
@param testResults: vector of test results
@param trueResFname: name of the file containing a column of true results
@return: the evaluation score
"""
y_true = getCol(csv2dict(trueResFname, hasHeader=True, dataTypes=[np.int]), 0)
return evaluate(testResults, y_true)
def readTrainingData(trainDataFname, testDataFname):
"""
@param trainDataFname: name of the training data file
@param testDataFname: name of the testing data file. used here only to get the string->index mapping of the text columns
@return: allDataPair, fieldMaps, sampleWeights
"""
fieldNames = ['survived', 'pclass', 'name', 'sex', 'age', 'sibsp', 'parch', 'ticket', 'fare', 'cabin', 'embarked','weight']
nameMap = dict(zip(fieldNames, range(len(fieldNames))))
dataTypes = np.array([np.int, np.int, '|S82', '|S82', np.float, np.int, np.int, '|S82', np.float, '|S82', '|S82', np.int])
outputFieldNames = []
# ------ read original data ---------
data = map(list, csv2dict(trainDataFname, hasHeader=True, dataTypes=dataTypes, colIndices=None, defaultNumValue=float('nan')))
all_y = np.array(getCol(data, [nameMap['survived']]))
all_x = list()
# sample weights
sampleWeights = np.array(getCol(data, [nameMap['weight']]))
# attach numerical fields first
for name in ['pclass', 'age', 'sibsp', 'parch', 'fare']:
outputFieldNames.append(name)
all_x.append(getCol(data, [nameMap[name]]))
# attach text fields
testData = csv2dict(testDataFname, hasHeader=True)
numTrainingDataPts = len(data)
fieldMaps = {}
for name in ['sex', 'name', 'ticket', 'cabin', 'embarked']:
outputFieldNames.append(name)
col, fieldMap = integerizeList(getCol(data, [nameMap[name]]) + list(testData[:, nameMap[name]-1]))
all_x.append(col[:numTrainingDataPts])
fieldMaps[name] = fieldMap
# normalize data
allDataPair = DatasetPair(np.array(zip(*all_x)), all_y, outputFieldNames)
return allDataPair, fieldMaps, sampleWeights