print "<tr><td>%s</td><td>%s</td><td>%s</td></tr>" % (
study, ", ".join(inURLs), ", ".join(outURLs))
print "</table>"
print "<h2>Bundles</h2>"
print """
<table border="1">
<tr>
<td>Bundle</td>
<td>Inside</td>
</tr>
"""
for bundle in MEGA.bundles:
pops = MEGA.bundles[bundle]
print "<tr><td>%s</td><td>%s</td></tr>" % (
web.getPopURL(bundle), ", ".join(web.getPopsURLs(pops)))
print "</table>"
print "<h2>Populations</h2>"
pops = MEGA.pops
print '<table border="1">'
curr = 0
print "<tr>"
for pop in pops:
print "<td>%s</td>" % (pop, )
if curr % 6 == 0:
print "</tr><tr>"
curr += 1
print "</tr>"
print "</table>"
print "<tr><td>%s</td><td>%s</td><td>%s</td></tr>" % (study, ", ".join(inURLs), ", ".join(outURLs))
print "</table>"
print "<h2>Bundles</h2>"
print """
<table border="1">
<tr>
<td>Bundle</td>
<td>Inside</td>
</tr>
"""
for bundle in MEGA.bundles:
pops = MEGA.bundles[bundle]
print "<tr><td>%s</td><td>%s</td></tr>" % (web.getPopURL(bundle), ", ".join(web.getPopsURLs(pops)))
print "</table>"
print "<h2>Populations</h2>"
pops = MEGA.pops
print '<table border="1">'
curr=0
print "<tr>"
for pop in pops:
print "<td>%s</td>" %(pop,)
if curr % 6 == 0:
print "</tr><tr>"
curr += 1
import MEGA
from MEGA import karyo, web
web.sendPreamble(None, None, "Studies")
print("""<h1>Studies</h1>
<table border="1">
""")
for studyName in MEGA.studies:
study = MEGA.studies[studyName]
study.configStudy()
def getHash(popStudy):
return MEGA.getHash(study.pops.getIndivs(popStudy))
inURLs = web.getPopsURLs(study.pops.pops, karyo.karyotype,
[getHash(x) for x in study.pops.pops])
print("""
<tr><td colspan="2" align="center"><b>Study: </b>%s</td></tr>
<tr><td colspan="2">%s</td></tr>
<tr><td colspan="2">%s</td></tr>
<tr><td>%s</td></tr>
""" % (web.getStudyURL(studyName), study.desc,
study.summary,
", ".join(inURLs)))
print("</table>")
isBundle = pop in MEGA.bundles
if isBundle:
mid = "bundles"
print "<h2>Bundle</h2>"
for p in MEGA.bundles[pop]:
print web.getPopURL(p) + ", "
else:
mid = "pops"
print "<b>Core pop</b>"
myBundles = []
for bundle in MEGA.bundles:
if pop in MEGA.bundles[bundle]:
myBundles.append(bundle)
if len(myBundles)>0:
print "I am in the following bundles: %s" %(", ".join(web.getPopsURLs(myBundles)))
print """
<table border="1">
<tr>
<td valign="top">
"""
print "<h2>Basic info</h2>"
if isBundle:
try:
f = open("%s/%s/%s/basic" %(MEGA.cacheDB, mid, pop))
print "<table border=1><tr><td><b>total</b></td><td>%s</td></tr><tr>" % (f.readline(),)
for l in f:
print "<tr><td>"
print "</td><td>".join(l.split("\t"))
