def __init__(self, parent):
super(CaseReportsWindow, self).__init__()
self.mainLayout = qt.QVBoxLayout(self)
self.setLayout(self.mainLayout)
self.resize(400, 300)
self.label = qt.QLabel("Data stored in the module: ")
self.label.setStyleSheet("margin: 10px 0 15px 0")
self.mainLayout.addWidget(self.label)
self.tableView = qt.QTableView()
self.tableView.setColumnWidth(0,125)
self.tableView.setSizePolicy(qt.QSizePolicy.Expanding, qt.QSizePolicy.Expanding)
self.mainLayout.addWidget(self.tableView)
self.exportButton = ctk.ctkPushButton()
self.exportButton.text = "Export"
self.exportButton.setFixedWidth(150)
self.exportButton.setIcon(qt.QIcon("{0}/export-csv.png".format(SlicerUtil.CIP_ICON_DIR)))
self.exportButton.setIconSize(qt.QSize(24,24))
self.mainLayout.addWidget(self.exportButton)
self.removeButton = ctk.ctkPushButton()
self.removeButton.text = "Clean cache"
self.removeButton.setIcon(qt.QIcon("{0}/delete.png".format(SlicerUtil.CIP_ICON_DIR)))
self.removeButton.setIconSize(qt.QSize(24,24))
self.removeButton.setFixedWidth(150)
self.mainLayout.addWidget(self.removeButton)
self.exportButton.connect('clicked()', parent.onExport)
self.removeButton.connect('clicked()', parent.onRemoveStoredData)
def setup(self):
self.saveValuesButton = ctk.ctkPushButton()
self.saveValuesButton.text = "Save"
self.saveValuesButton.setIcon(qt.QIcon("{0}/Save.png".format(SlicerUtil.CIP_ICON_DIR)))
self.saveValuesButton.setIconSize(qt.QSize(24,24))
self.layout.addWidget(self.saveValuesButton)
self.openButton = ctk.ctkPushButton()
self.openButton.text = "Open"
self.openButton.setIcon(qt.QIcon("{0}/open_file.png".format(SlicerUtil.CIP_ICON_DIR)))
self.openButton.setIconSize(qt.QSize(24,24))
self.layout.addWidget(self.openButton)
self.exportButton = ctk.ctkPushButton()
self.exportButton.text = "Export"
self.exportButton.setIcon(qt.QIcon("{0}/export-csv.png".format(SlicerUtil.CIP_ICON_DIR)))
self.exportButton.setIconSize(qt.QSize(24,24))
self.layout.addWidget(self.exportButton)
self.removeButton = ctk.ctkPushButton()
self.removeButton.setIcon(qt.QIcon("{0}/delete.png".format(SlicerUtil.CIP_ICON_DIR)))
self.removeButton.setIconSize(qt.QSize(24,24))
self.removeButton.text = "Clean cache"
self.layout.addWidget(self.removeButton)
self.saveValuesButton.connect('clicked()', self.onSave)
self.exportButton.connect('clicked()', self.onExport)
self.openButton.connect('clicked()', self.onShowStoredData)
self.removeButton.connect('clicked()', self.onRemoveStoredData)
def setup(self):
"""This is called one time when the module GUI is initialized
"""
ScriptedLoadableModuleWidget.setup(self)
# Create objects that can be used anywhere in the module. Example: in most cases there should be just one
# object of the logic class
self.logic = CIP_BlankLogic()
# Create all the widgets. Main Area
mainAreaCollapsibleButton = ctk.ctkCollapsibleButton()
mainAreaCollapsibleButton.text = "Main parameters"
self.layout.addWidget(mainAreaCollapsibleButton)
# Layout within the dummy collapsible button. See http://doc.qt.io/qt-4.8/layout.html for more info about layouts
self.mainAreaLayout = qt.QFormLayout(mainAreaCollapsibleButton)
# Example button with some common properties
self.exampleButton = ctk.ctkPushButton()
self.exampleButton.text = "Push me!"
self.exampleButton.toolTip = "This is the button tooltip"
self.exampleButton.setIcon(qt.QIcon("{0}/Reload.png".format(SlicerUtil.CIP_ICON_DIR)))
self.exampleButton.setIconSize(qt.QSize(20,20))
self.exampleButton.setStyleSheet("font-weight:bold; font-size:12px" )
self.exampleButton.setFixedWidth(200)
self.mainAreaLayout.addWidget(self.exampleButton)
# Connections
self.exampleButton.connect('clicked()', self.onApplyButton)
def __createGUI__(self):
"""Add the GUI components"""
self.autoupdateCollapsibleButton = ctk.ctkCollapsibleButton()
self.autoupdateCollapsibleButton.text = "Auto update"
self.autoupdateCollapsibleButton.collapsed = True
self.layout.addWidget(self.autoupdateCollapsibleButton)
#self.mainLayout = qt.QHBoxLayout(self.autoupdateCollapsibleButton)
self.mainLayout = qt.QFormLayout(self.autoupdateCollapsibleButton)
self.checkAutoUpdate = qt.QCheckBox()
self.checkAutoUpdate.checked = self.autoUpdate
self.checkAutoUpdate.text = "Auto update CIP at startup"
self.checkForceUpdate = qt.QCheckBox()
self.checkForceUpdate.checked = False
self.checkForceUpdate.text = "Force update"
self.mainLayout.addRow(self.checkAutoUpdate, self.checkForceUpdate)
self.btnUpdate = ctk.ctkPushButton()
self.btnUpdate.text = "Update CIP now"
self.mainLayout.addWidget(self.btnUpdate)
self.btnUpdate.connect('clicked()', self.onbtnUpdateClicked)
self.checkAutoUpdate.connect('stateChanged(int)', self.onCheckAutoUpdateClicked)
def setup(self):
"""This is called one time when the module GUI is initialized
"""
ScriptedLoadableModuleWidget.setup(self)
# Create objects that can be used anywhere in the module. Example: in most cases there should be just one
# object of the logic class
self.logic = CIP_BlankLogic()
# Create all the widgets. Main Area
mainAreaCollapsibleButton = ctk.ctkCollapsibleButton()
mainAreaCollapsibleButton.text = "Main parameters"
self.layout.addWidget(mainAreaCollapsibleButton)
# Layout within the dummy collapsible button. See http://doc.qt.io/qt-4.8/layout.html for more info about layouts
self.mainAreaLayout = qt.QFormLayout(mainAreaCollapsibleButton)
# Example button with some common properties
self.exampleButton = ctk.ctkPushButton()
self.exampleButton.text = "Push me!"
self.exampleButton.toolTip = "This is the button tooltip"
self.exampleButton.setIcon(
qt.QIcon("{0}/Reload.png".format(SlicerUtil.CIP_ICON_DIR)))
self.exampleButton.setIconSize(qt.QSize(20, 20))
self.exampleButton.setStyleSheet("font-weight:bold; font-size:12px")
self.exampleButton.setFixedWidth(200)
self.mainAreaLayout.addWidget(self.exampleButton)
# Connections
self.exampleButton.connect('clicked()', self.onApplyButton)
def setup(self,
moduleName="",
labelmapNodeNameExtensions=defaultLabelmapNodeNameExtensions,
volumesFileExtensions=defaultVolumesFileExtensions,
iconsPath=None):
"""Setup the widget with the desride options.
Defaults:
- moduleName = "" --> used just to set the settings (for instance the last directory that was opened in the module).
- labelmapNodeNameExtensions = ["_partialLung", "_bodyComposition"] --> node names that will be used to identify a label map
- volumesFileExtensions = [".nhdr", ".nrrd"] --> extensions of the files that will be allowed to be loaded. The first item will be used to save new label maps
"""
settings = slicer.app.settings()
try:
self.IsDevelopment = settings.value(
'Developer/DeveloperMode').lower() == 'true'
except:
self.IsDevelopment = False
self.setParameters(moduleName, labelmapNodeNameExtensions,
volumesFileExtensions)
if not iconsPath:
iconsPath = SlicerUtil.CIP_ICON_DIR
#print("Imported " + iconsPath)
# ctkCollapsibleButton+frame that wrap everything
self.loadSaveFilesCollapsibleButton = ctk.ctkCollapsibleButton()
self.loadSaveFilesCollapsibleButton.text = "Quick Load / Save data (nrrd format)"
self.layout.addWidget(self.loadSaveFilesCollapsibleButton)
loadSaveFilesLayout = qt.QVBoxLayout(
self.loadSaveFilesCollapsibleButton)
self.buttonsFrame = qt.QFrame(self.parent)
self.buttonsFrame.setLayout(qt.QHBoxLayout())
# Buttons
self.btnLoad = ctk.ctkPushButton()
self.btnLoad.text = "Load cases"
self.btnLoad.toolTip = "Load one or more cases and their bodyComposition label maps"
self.btnLoad.setIcon(qt.QIcon("{0}/Load.png".format(iconsPath)))
self.btnLoad.setIconSize(qt.QSize(32, 32))
self.btnSave = ctk.ctkPushButton()
self.btnSave.text = "Save labelmap"
self.btnSave.toolTip = "Save the current bodyComposition labelmap"
self.btnSave.setIcon(qt.QIcon("{0}/Save.png".format(iconsPath)))
self.btnSave.setIconSize(qt.QSize(32, 32))
self.btnSaveAll = ctk.ctkPushButton()
self.btnSaveAll.text = "Save all labelmaps"
self.btnSaveAll.toolTip = "Save all the opened bodyComposition labelmaps"
self.btnSaveAll.setIcon(qt.QIcon("{0}/SaveAll.png".format(iconsPath)))
self.btnSaveAll.setIconSize(qt.QSize(32, 32))
self.buttonsFrame.layout().addWidget(self.btnLoad)
self.buttonsFrame.layout().addWidget(self.btnSave)
self.buttonsFrame.layout().addWidget(self.btnSaveAll)
loadSaveFilesLayout.addWidget(self.buttonsFrame)
# Additional parameters
# additionalParamsCollapsibleButton = ctk.ctkCollapsibleButton()
# self.op = qt.QStyleOptionButton()
# additionalParamsCollapsibleButton.initStyleOptions(self.op)
# additionalParamsCollapsibleButton.text = "Other params"
# self.layout.addWidget(additionalParamsCollapsibleButton)
# aditionalParamsLayout = qt.QFormLayout(additionalParamsCollapsibleButton)
#
# # Chest regions combo box
# self.cbFileType = qt.QComboBox(additionalParamsCollapsibleButton)
# self.cbFileType.addItem("My item")
# self.cbFileType.setItemData(0, "My key")
# # index=0
# # for key, item in self.logic.regionTypes.iteritems():
# # self.regionComboBox.addItem(item[1]) # Add label description
# # self.regionComboBox.setItemData(index, key) # Add string code
# # index += 1
# aditionalParamsLayout.addRow("Select the file type ", self.cbFileType)
# Connections
self.btnLoad.connect('clicked()', self.onBtnLoadClicked)
self.btnSave.connect('clicked()', self.onBtnSaveClicked)
self.btnSaveAll.connect('clicked()', self.onBtnSaveAllClicked)
def setup(self, moduleName = "", labelmapNodeNameExtensions=defaultLabelmapNodeNameExtensions,
volumesFileExtensions=defaultVolumesFileExtensions, iconsPath=None):
"""Setup the widget with the desride options.
Defaults:
- moduleName = "" --> used just to set the settings (for instance the last directory that was opened in the module).
- labelmapNodeNameExtensions = ["_partialLung", "_bodyComposition"] --> node names that will be used to identify a label map
- volumesFileExtensions = [".nhdr", ".nrrd"] --> extensions of the files that will be allowed to be loaded. The first item will be used to save new label maps
"""
settings = slicer.app.settings()
try:
self.IsDevelopment = settings.value('Developer/DeveloperMode').lower() == 'true'
except:
self.IsDevelopment = False
self.setParameters(moduleName, labelmapNodeNameExtensions, volumesFileExtensions)
if not iconsPath:
iconsPath = SlicerUtil.CIP_ICON_DIR
#print("Imported " + iconsPath)
# ctkCollapsibleButton+frame that wrap everything
self.loadSaveFilesCollapsibleButton = ctk.ctkCollapsibleButton()
self.loadSaveFilesCollapsibleButton.text = "Quick Load / Save data (nrrd format)"
self.layout.addWidget(self.loadSaveFilesCollapsibleButton)
loadSaveFilesLayout = qt.QVBoxLayout(self.loadSaveFilesCollapsibleButton)
self.buttonsFrame = qt.QFrame(self.parent)
self.buttonsFrame.setLayout(qt.QHBoxLayout())
# Buttons
self.btnLoad = ctk.ctkPushButton()
self.btnLoad.text = "Load cases"
self.btnLoad.toolTip = "Load one or more cases and their bodyComposition label maps"
self.btnLoad.setIcon(qt.QIcon("{0}/Load.png".format(iconsPath)))
self.btnLoad.setIconSize(qt.QSize(32,32))
self.btnSave = ctk.ctkPushButton()
self.btnSave.text = "Save labelmap"
self.btnSave.toolTip = "Save the current bodyComposition labelmap"
self.btnSave.setIcon(qt.QIcon("{0}/Save.png".format(iconsPath)))
self.btnSave.setIconSize(qt.QSize(32,32))
self.btnSaveAll = ctk.ctkPushButton()
self.btnSaveAll.text = "Save all labelmaps"
self.btnSaveAll.toolTip = "Save all the opened bodyComposition labelmaps"
self.btnSaveAll.setIcon(qt.QIcon("{0}/SaveAll.png".format(iconsPath)))
self.btnSaveAll.setIconSize(qt.QSize(32,32))
self.buttonsFrame.layout().addWidget(self.btnLoad)
self.buttonsFrame.layout().addWidget(self.btnSave)
self.buttonsFrame.layout().addWidget(self.btnSaveAll)
loadSaveFilesLayout.addWidget(self.buttonsFrame)
# Additional parameters
# additionalParamsCollapsibleButton = ctk.ctkCollapsibleButton()
# self.op = qt.QStyleOptionButton()
# additionalParamsCollapsibleButton.initStyleOptions(self.op)
# additionalParamsCollapsibleButton.text = "Other params"
# self.layout.addWidget(additionalParamsCollapsibleButton)
# aditionalParamsLayout = qt.QFormLayout(additionalParamsCollapsibleButton)
#
# # Chest regions combo box
# self.cbFileType = qt.QComboBox(additionalParamsCollapsibleButton)
# self.cbFileType.addItem("My item")
# self.cbFileType.setItemData(0, "My key")
# # index=0
# # for key, item in self.logic.regionTypes.iteritems():
# # self.cbRegion.addItem(item[1]) # Add label description
# # self.cbRegion.setItemData(index, key) # Add string code
# # index += 1
# aditionalParamsLayout.addRow("Select the file type ", self.cbFileType)
# Connections
self.btnLoad.connect('clicked()', self.onBtnLoadClicked)
self.btnSave.connect('clicked()', self.onBtnSaveClicked)
self.btnSaveAll.connect('clicked()', self.onBtnSaveAllClicked)
def setup(self):
"""This is called one time when the module GUI is initialized
"""
ScriptedLoadableModuleWidget.setup(self)
# Create objects that can be used anywhere in the module. Example: in most cases there should be just one
# object of the logic class
self.logic = CIP_PAARatioLogic()
#
# Create all the widgets. Example Area
mainAreaCollapsibleButton = ctk.ctkCollapsibleButton()
mainAreaCollapsibleButton.text = "Main parameters"
self.layout.addWidget(mainAreaCollapsibleButton)
self.mainAreaLayout = qt.QGridLayout(mainAreaCollapsibleButton)
self.label = qt.QLabel("Select the volume")
self.label.setStyleSheet("margin:10px 0 20px 7px")
self.mainAreaLayout.addWidget(self.label, 0, 0)
self.volumeSelector = slicer.qMRMLNodeComboBox()
self.volumeSelector.nodeTypes = ("vtkMRMLScalarVolumeNode", "")
# DEPRECATED. Now there is a new vtkMRMLLabelMapNode
#self.volumeSelector.addAttribute( "vtkMRMLScalarVolumeNode", "LabelMap", "0" ) # No labelmaps
self.volumeSelector.selectNodeUponCreation = True
self.volumeSelector.autoFillBackground = True
self.volumeSelector.addEnabled = True
self.volumeSelector.noneEnabled = False
self.volumeSelector.removeEnabled = False
self.volumeSelector.showHidden = False
self.volumeSelector.showChildNodeTypes = False
self.volumeSelector.setMRMLScene(slicer.mrmlScene)
self.volumeSelector.setStyleSheet(
"margin:0px 0 0px 0; padding:2px 0 2px 5px")
self.mainAreaLayout.addWidget(self.volumeSelector, 0, 1)
# self.label2 = qt.QLabel("Select the slice")
# self.label2.setStyleSheet("margin:0px 0 20px 7px; padding-top:20px")
# self.mainAreaLayout.addWidget(self.label2, 1, 0)
self.placeDefaultRulersButton = ctk.ctkPushButton()
self.placeDefaultRulersButton.text = "Place default rulers"
# self.placeDefaultRulersSliceButton.toolTip = "Navigate to the best estimated slice to place the rulers"
self.placeDefaultRulersButton.setIcon(
qt.QIcon("{0}/next.png".format(SlicerUtil.CIP_ICON_DIR)))
self.placeDefaultRulersButton.setIconSize(qt.QSize(20, 20))
self.placeDefaultRulersButton.setStyleSheet("font-weight: bold;")
# self.placeDefaultRulersButton.setFixedWidth(140)
self.mainAreaLayout.addWidget(self.placeDefaultRulersButton, 1, 1)
### Structure Selector
self.structuresGroupbox = qt.QGroupBox("Select the structure")
self.groupboxLayout = qt.QVBoxLayout()
self.structuresGroupbox.setLayout(self.groupboxLayout)
self.mainAreaLayout.addWidget(self.structuresGroupbox, 2, 0)
self.structuresButtonGroup = qt.QButtonGroup()
# btn = qt.QRadioButton("None")
# btn.visible = False
# self.structuresButtonGroup.addButton(btn)
# self.groupboxLayout.addWidget(btn)
btn = qt.QRadioButton("Both")
btn.checked = True
self.structuresButtonGroup.addButton(btn, 0)
self.groupboxLayout.addWidget(btn)
btn = qt.QRadioButton("Pulmonary Arterial")
self.structuresButtonGroup.addButton(btn, 1)
self.groupboxLayout.addWidget(btn)
btn = qt.QRadioButton("Aorta")
self.structuresButtonGroup.addButton(btn, 2)
self.groupboxLayout.addWidget(btn)
### Buttons toolbox
self.buttonsToolboxFrame = qt.QFrame()
self.buttonsToolboxLayout = qt.QGridLayout()
self.buttonsToolboxFrame.setLayout(self.buttonsToolboxLayout)
self.mainAreaLayout.addWidget(self.buttonsToolboxFrame, 2, 1)
self.placeRulersButton = ctk.ctkPushButton()
self.placeRulersButton.text = "Place ruler/s"
self.placeRulersButton.toolTip = "Place the ruler/s for the selected structure/s in the current slice"
self.placeRulersButton.setIcon(
qt.QIcon("{0}/ruler.png".format(SlicerUtil.CIP_ICON_DIR)))
self.placeRulersButton.setIconSize(qt.QSize(20, 20))
self.placeRulersButton.setFixedWidth(105)
self.placeRulersButton.setStyleSheet("font-weight:bold")
self.buttonsToolboxLayout.addWidget(self.placeRulersButton, 0, 0)
self.moveUpButton = ctk.ctkPushButton()
self.moveUpButton.text = "Move up"
self.moveUpButton.toolTip = "Move the selected ruler/s one slice up"
self.moveUpButton.setIcon(
qt.QIcon("{0}/move_up.png".format(SlicerUtil.CIP_ICON_DIR)))
self.moveUpButton.setIconSize(qt.QSize(20, 20))
self.moveUpButton.setFixedWidth(95)
self.buttonsToolboxLayout.addWidget(self.moveUpButton, 0, 1)
self.moveDownButton = ctk.ctkPushButton()
self.moveDownButton.text = "Move down"
self.moveDownButton.toolTip = "Move the selected ruler/s one slice down"
self.moveDownButton.setIcon(
qt.QIcon("{0}/move_down.png".format(SlicerUtil.CIP_ICON_DIR)))
self.moveDownButton.setIconSize(qt.QSize(20, 20))
self.moveDownButton.setFixedWidth(95)
self.buttonsToolboxLayout.addWidget(self.moveDownButton, 0, 2)
self.removeButton = ctk.ctkPushButton()
self.removeButton.text = "Remove ALL rulers"
self.removeButton.toolTip = "Remove all the rulers for this volume"
self.removeButton.setIcon(
qt.QIcon("{0}/delete.png".format(SlicerUtil.CIP_ICON_DIR)))
self.removeButton.setIconSize(qt.QSize(20, 20))
self.buttonsToolboxLayout.addWidget(self.removeButton, 1, 1, 1, 2, 2)
### Textboxes
self.textboxesFrame = qt.QFrame()
self.textboxesLayout = qt.QFormLayout()
self.textboxesFrame.setLayout(self.textboxesLayout)
self.textboxesFrame.setFixedWidth(190)
self.mainAreaLayout.addWidget(self.textboxesFrame, 3, 0)
self.paTextBox = qt.QLineEdit()
self.paTextBox.setReadOnly(True)
self.textboxesLayout.addRow("PA (mm): ", self.paTextBox)
self.aortaTextBox = qt.QLineEdit()
self.aortaTextBox.setReadOnly(True)
self.textboxesLayout.addRow("Aorta (mm): ", self.aortaTextBox)
self.ratioTextBox = qt.QLineEdit()
self.ratioTextBox.setReadOnly(True)
self.textboxesLayout.addRow("Ratio PA/A: ", self.ratioTextBox)
# Save case data
self.reportsCollapsibleButton = ctk.ctkCollapsibleButton()
self.reportsCollapsibleButton.text = "Reporting"
self.layout.addWidget(self.reportsCollapsibleButton)
self.reportsLayout = qt.QHBoxLayout(self.reportsCollapsibleButton)
self.storedColumnNames = [
"caseId", "paDiameter_mm", "aortaDiameter_mm", "pa1r", "pa1a",
"pa1s", "pa2r", "pa2a", "pa2s", "a1r", "a1a", "a1s", "a2r", "a2a",
"a2s"
]
self.reportsWidget = CaseReportsWidget(
"CIP_PAARatio",
columnNames=self.storedColumnNames,
parentWidget=self.reportsCollapsibleButton)
self.reportsWidget.setup()
self.switchToRedView()
#####
# Case navigator
if SlicerUtil.isSlicerACILLoaded():
caseNavigatorAreaCollapsibleButton = ctk.ctkCollapsibleButton()
caseNavigatorAreaCollapsibleButton.text = "Case navigator"
self.layout.addWidget(caseNavigatorAreaCollapsibleButton, 0x0020)
# caseNavigatorLayout = qt.QVBoxLayout(caseNavigatorAreaCollapsibleButton)
# Add a case list navigator
from ACIL.ui import CaseNavigatorWidget
self.caseNavigatorWidget = CaseNavigatorWidget(
self.moduleName, caseNavigatorAreaCollapsibleButton)
self.caseNavigatorWidget.setup()
self.layout.addStretch()
# Connections
self.observers = []
self.__addSceneObservables__()
self.volumeSelector.connect('currentNodeChanged(vtkMRMLNode*)',
self.onVolumeSelectorChanged)
self.placeDefaultRulersButton.connect('clicked()',
self.oPlaceDefaultRulersClicked)
self.placeRulersButton.connect('clicked()', self.onPlaceRulersClicked)
self.moveUpButton.connect('clicked()', self.onMoveUpRulerClicked)
self.moveDownButton.connect('clicked()', self.onMoveDownRulerClicked)
self.removeButton.connect('clicked()', self.onRemoveRulerClicked)
self.reportsWidget.addObservable(
self.reportsWidget.EVENT_SAVE_BUTTON_CLICKED, self.onSaveReport)
def setup(self):
"""This is called one time when the module GUI is initialized
"""
ScriptedLoadableModuleWidget.setup(self)
# Create objects that can be used anywhere in the module. Example: in most cases there should be just one
# object of the logic class
self.logic = CIP_PAARatioLogic()
#
# Create all the widgets. Example Area
mainAreaCollapsibleButton = ctk.ctkCollapsibleButton()
mainAreaCollapsibleButton.text = "Main parameters"
self.layout.addWidget(mainAreaCollapsibleButton)
self.mainAreaLayout = qt.QGridLayout(mainAreaCollapsibleButton)
self.label = qt.QLabel("Select the volume")
self.label.setStyleSheet("margin:10px 0 20px 7px")
self.mainAreaLayout.addWidget(self.label, 0, 0)
self.volumeSelector = slicer.qMRMLNodeComboBox()
self.volumeSelector.nodeTypes = ("vtkMRMLScalarVolumeNode", "")
# DEPRECATED. Now there is a new vtkMRMLLabelMapNode
# self.volumeSelector.addAttribute( "vtkMRMLScalarVolumeNode", "LabelMap", "0" ) # No labelmaps
self.volumeSelector.selectNodeUponCreation = True
self.volumeSelector.autoFillBackground = True
self.volumeSelector.addEnabled = True
self.volumeSelector.noneEnabled = False
self.volumeSelector.removeEnabled = False
self.volumeSelector.showHidden = False
self.volumeSelector.showChildNodeTypes = False
self.volumeSelector.setMRMLScene(slicer.mrmlScene)
self.volumeSelector.setStyleSheet("margin:0px 0 0px 0; padding:2px 0 2px 5px")
self.mainAreaLayout.addWidget(self.volumeSelector, 0, 1)
# self.label2 = qt.QLabel("Select the slice")
# self.label2.setStyleSheet("margin:0px 0 20px 7px; padding-top:20px")
# self.mainAreaLayout.addWidget(self.label2, 1, 0)
self.placeDefaultRulersButton = ctk.ctkPushButton()
self.placeDefaultRulersButton.text = "Place default rulers"
# self.placeDefaultRulersSliceButton.toolTip = "Navigate to the best estimated slice to place the rulers"
self.placeDefaultRulersButton.setIcon(qt.QIcon("{0}/next.png".format(SlicerUtil.CIP_ICON_DIR)))
self.placeDefaultRulersButton.setIconSize(qt.QSize(20, 20))
self.placeDefaultRulersButton.setStyleSheet("font-weight: bold;")
# self.placeDefaultRulersButton.setFixedWidth(140)
self.mainAreaLayout.addWidget(self.placeDefaultRulersButton, 1, 1)
### Structure Selector
self.structuresGroupbox = qt.QGroupBox("Select the structure")
self.groupboxLayout = qt.QVBoxLayout()
self.structuresGroupbox.setLayout(self.groupboxLayout)
self.mainAreaLayout.addWidget(self.structuresGroupbox, 2, 0)
self.structuresButtonGroup = qt.QButtonGroup()
# btn = qt.QRadioButton("None")
# btn.visible = False
# self.structuresButtonGroup.addButton(btn)
# self.groupboxLayout.addWidget(btn)
btn = qt.QRadioButton("Both")
btn.checked = True
self.structuresButtonGroup.addButton(btn, 0)
self.groupboxLayout.addWidget(btn)
btn = qt.QRadioButton("Pulmonary Arterial")
self.structuresButtonGroup.addButton(btn, 1)
self.groupboxLayout.addWidget(btn)
btn = qt.QRadioButton("Aorta")
self.structuresButtonGroup.addButton(btn, 2)
self.groupboxLayout.addWidget(btn)
### Buttons toolbox
self.buttonsToolboxFrame = qt.QFrame()
self.buttonsToolboxLayout = qt.QGridLayout()
self.buttonsToolboxFrame.setLayout(self.buttonsToolboxLayout)
self.mainAreaLayout.addWidget(self.buttonsToolboxFrame, 2, 1)
self.placeRulersButton = ctk.ctkPushButton()
self.placeRulersButton.text = "Place ruler/s"
self.placeRulersButton.toolTip = "Place the ruler/s for the selected structure/s in the current slice"
self.placeRulersButton.setIcon(qt.QIcon("{0}/ruler.png".format(SlicerUtil.CIP_ICON_DIR)))
self.placeRulersButton.setIconSize(qt.QSize(20, 20))
self.placeRulersButton.setFixedWidth(105)
self.placeRulersButton.setStyleSheet("font-weight:bold")
self.buttonsToolboxLayout.addWidget(self.placeRulersButton, 0, 0)
self.moveUpButton = ctk.ctkPushButton()
self.moveUpButton.text = "Move up"
self.moveUpButton.toolTip = "Move the selected ruler/s one slice up"
self.moveUpButton.setIcon(qt.QIcon("{0}/move_up.png".format(SlicerUtil.CIP_ICON_DIR)))
self.moveUpButton.setIconSize(qt.QSize(20, 20))
self.moveUpButton.setFixedWidth(95)
self.buttonsToolboxLayout.addWidget(self.moveUpButton, 0, 1)
self.moveDownButton = ctk.ctkPushButton()
self.moveDownButton.text = "Move down"
self.moveDownButton.toolTip = "Move the selected ruler/s one slice down"
self.moveDownButton.setIcon(qt.QIcon("{0}/move_down.png".format(SlicerUtil.CIP_ICON_DIR)))
self.moveDownButton.setIconSize(qt.QSize(20, 20))
self.moveDownButton.setFixedWidth(95)
self.buttonsToolboxLayout.addWidget(self.moveDownButton, 0, 2)
self.removeButton = ctk.ctkPushButton()
self.removeButton.text = "Remove ALL rulers"
self.removeButton.toolTip = "Remove all the rulers for this volume"
self.removeButton.setIcon(qt.QIcon("{0}/delete.png".format(SlicerUtil.CIP_ICON_DIR)))
self.removeButton.setIconSize(qt.QSize(20, 20))
self.buttonsToolboxLayout.addWidget(self.removeButton, 1, 1, 1, 2, 2)
### Textboxes
self.textboxesFrame = qt.QFrame()
self.textboxesLayout = qt.QFormLayout()
self.textboxesFrame.setLayout(self.textboxesLayout)
self.textboxesFrame.setFixedWidth(190)
self.mainAreaLayout.addWidget(self.textboxesFrame, 3, 0)
self.paTextBox = qt.QLineEdit()
self.paTextBox.setReadOnly(True)
self.textboxesLayout.addRow("PA (mm): ", self.paTextBox)
self.aortaTextBox = qt.QLineEdit()
self.aortaTextBox.setReadOnly(True)
self.textboxesLayout.addRow("Aorta (mm): ", self.aortaTextBox)
self.ratioTextBox = qt.QLineEdit()
self.ratioTextBox.setReadOnly(True)
self.textboxesLayout.addRow("Ratio PA/A: ", self.ratioTextBox)
# Save case data
self.reportsCollapsibleButton = ctk.ctkCollapsibleButton()
self.reportsCollapsibleButton.text = "Reporting"
self.layout.addWidget(self.reportsCollapsibleButton)
self.reportsLayout = qt.QHBoxLayout(self.reportsCollapsibleButton)
self.storedColumnNames = [
"caseId",
"paDiameter_mm",
"aortaDiameter_mm",
"pa1r",
"pa1a",
"pa1s",
"pa2r",
"pa2a",
"pa2s",
"a1r",
"a1a",
"a1s",
"a2r",
"a2a",
"a2s",
]
self.reportsWidget = CaseReportsWidget(
"CIP_PAARatio", columnNames=self.storedColumnNames, parentWidget=self.reportsCollapsibleButton
)
self.reportsWidget.setup()
self.switchToRedView()
#####
# Case navigator
if SlicerUtil.isSlicerACILLoaded():
caseNavigatorAreaCollapsibleButton = ctk.ctkCollapsibleButton()
caseNavigatorAreaCollapsibleButton.text = "Case navigator"
self.layout.addWidget(caseNavigatorAreaCollapsibleButton, 0x0020)
# caseNavigatorLayout = qt.QVBoxLayout(caseNavigatorAreaCollapsibleButton)
# Add a case list navigator
from ACIL.ui import CaseNavigatorWidget
self.caseNavigatorWidget = CaseNavigatorWidget(self.moduleName, caseNavigatorAreaCollapsibleButton)
self.caseNavigatorWidget.setup()
self.layout.addStretch()
# Connections
self.observers = []
self.__addSceneObservables__()
self.volumeSelector.connect("currentNodeChanged(vtkMRMLNode*)", self.onVolumeSelectorChanged)
self.placeDefaultRulersButton.connect("clicked()", self.oPlaceDefaultRulersClicked)
self.placeRulersButton.connect("clicked()", self.onPlaceRulersClicked)
self.moveUpButton.connect("clicked()", self.onMoveUpRulerClicked)
self.moveDownButton.connect("clicked()", self.onMoveDownRulerClicked)
self.removeButton.connect("clicked()", self.onRemoveRulerClicked)
self.reportsWidget.addObservable(self.reportsWidget.EVENT_SAVE_BUTTON_CLICKED, self.onSaveReport)
def setup(self):
"""This is called one time when the module GUI is initialized
"""
ScriptedLoadableModuleWidget.setup(self)
# Create objects that can be used anywhere in the module. Example: in most cases there should be just one
# object of the logic class
self.logic = CIP_ParenchymaSubtypeTrainingLogic()
self.currentVolumeLoaded = None
self.blockNodeEvents = False
##########
# Main area
self.mainAreaCollapsibleButton = ctk.ctkCollapsibleButton()
self.mainAreaCollapsibleButton.text = "Main area"
self.layout.addWidget(self.mainAreaCollapsibleButton, SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.mainLayout = qt.QGridLayout(self.mainAreaCollapsibleButton)
# Node selector
volumeLabel = qt.QLabel("Active volume: ")
volumeLabel.setStyleSheet("margin-left:5px")
self.mainLayout.addWidget(volumeLabel, 0, 0)
self.volumeSelector = slicer.qMRMLNodeComboBox()
self.volumeSelector.nodeTypes = ("vtkMRMLScalarVolumeNode", "")
self.volumeSelector.selectNodeUponCreation = True
self.volumeSelector.autoFillBackground = True
self.volumeSelector.addEnabled = False
self.volumeSelector.noneEnabled = False
self.volumeSelector.removeEnabled = False
self.volumeSelector.showHidden = False
self.volumeSelector.showChildNodeTypes = False
self.volumeSelector.setMRMLScene(slicer.mrmlScene)
self.volumeSelector.setFixedWidth(250)
self.volumeSelector.setStyleSheet("margin: 15px 0")
#self.volumeSelector.selectNodeUponCreation = False
self.mainLayout.addWidget(self.volumeSelector, 0, 1, 1, 3)
labelsStyle = "font-weight: bold; margin: 0 0 5px 5px;"
# Types Radio Buttons
typesLabel = qt.QLabel("Select the type")
typesLabel.setStyleSheet(labelsStyle)
typesLabel.setFixedHeight(15)
self.mainLayout.addWidget(typesLabel, 1, 0)
self.typesFrame = qt.QFrame()
self.typesLayout = qt.QVBoxLayout(self.typesFrame)
self.mainLayout.addWidget(self.typesFrame, 2, 0, SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.typesRadioButtonGroup = qt.QButtonGroup()
for key in self.logic.params.mainTypes.iterkeys():
rbitem = qt.QRadioButton(self.logic.params.getMainTypeLabel(key))
self.typesRadioButtonGroup.addButton(rbitem, key)
self.typesLayout.addWidget(rbitem)
self.typesRadioButtonGroup.buttons()[0].setChecked(True)
# Subtypes Radio buttons
subtypesLabel = qt.QLabel("Select the subtype")
subtypesLabel.setStyleSheet(labelsStyle)
subtypesLabel.setFixedHeight(15)
self.mainLayout.addWidget(subtypesLabel, 1, 1)
self.subtypesRadioButtonGroup = qt.QButtonGroup()
self.subtypesFrame = qt.QFrame()
self.subtypesFrame.setMinimumHeight(275)
self.subtypesLayout = qt.QVBoxLayout(self.subtypesFrame)
self.subtypesLayout.setAlignment(SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.subtypesLayout.setStretch(0, 0)
self.mainLayout.addWidget(self.subtypesFrame, 2, 1, SlicerUtil.ALIGNMENT_VERTICAL_TOP) # Put the frame in the top
# The content will be loaded dynamically every time the main type is modified
# Artifact radio buttons
self.artifactsLabel = qt.QLabel("Artifact")
self.artifactsLabel.setStyleSheet(labelsStyle)
self.artifactsLabel.setFixedHeight(15)
self.mainLayout.addWidget(self.artifactsLabel, 1, 2)
#self.mainLayout.addWidget(qt.QLabel("Select the artifact"), 1, 1)
self.artifactsRadioButtonGroup = qt.QButtonGroup()
self.artifactsFrame = qt.QFrame()
self.artifactsLayout = qt.QVBoxLayout(self.artifactsFrame)
self.mainLayout.addWidget(self.artifactsFrame, 2, 2, SlicerUtil.ALIGNMENT_VERTICAL_TOP)
self.artifactsRadioButtonGroup = qt.QButtonGroup()
for artifactId in self.logic.params.artifacts.iterkeys():
rbitem = qt.QRadioButton(self.logic.params.getArtifactLabel(artifactId))
self.artifactsRadioButtonGroup.addButton(rbitem, artifactId)
self.artifactsLayout.addWidget(rbitem)
self.artifactsRadioButtonGroup.buttons()[0].setChecked(True)
# Load caselist button
self.loadButton = ctk.ctkPushButton()
self.loadButton.text = "Load fiducials file"
self.loadButton.setIcon(qt.QIcon("{0}/open_file.png".format(SlicerUtil.CIP_ICON_DIR)))
self.loadButton.setIconSize(qt.QSize(20, 20))
self.loadButton.setFixedWidth(135)
self.mainLayout.addWidget(self.loadButton, 3, 0)
# Remove fiducial button
self.removeLastFiducialButton = ctk.ctkPushButton()
self.removeLastFiducialButton.text = "Remove last fiducial"
self.removeLastFiducialButton.toolTip = "Remove the last fiducial added"
self.removeLastFiducialButton.setIcon(qt.QIcon("{0}/delete.png".format(SlicerUtil.CIP_ICON_DIR)))
self.removeLastFiducialButton.setIconSize(qt.QSize(20, 20))
self.removeLastFiducialButton.setFixedWidth(200)
self.mainLayout.addWidget(self.removeLastFiducialButton, 3, 1)
# Save results button
self.saveResultsButton = ctk.ctkPushButton()
self.saveResultsButton.setText("Save markups")
self.saveResultsButton.toolTip = "Save the markups in the specified directory"
self.saveResultsButton.setIcon(qt.QIcon("{0}/Save.png".format(SlicerUtil.CIP_ICON_DIR)))
self.saveResultsButton.setIconSize(qt.QSize(20,20))
self.mainLayout.addWidget(self.saveResultsButton, 4, 0)
# Save results directory button
defaultPath = os.path.join(SlicerUtil.getSettingsDataFolder(self.moduleName), "Results") # Assign a default path for the results
path = SlicerUtil.settingGetOrSetDefault(self.moduleName, "SaveResultsDirectory", defaultPath)
self.saveResultsDirectoryButton = ctk.ctkDirectoryButton()
self.saveResultsDirectoryButton.directory = path
self.saveResultsDirectoryButton.setMaximumWidth(375)
self.mainLayout.addWidget(self.saveResultsDirectoryButton, 4, 1, 1, 2)
#####
# Case navigator
if SlicerUtil.isSlicerACILLoaded():
caseNavigatorAreaCollapsibleButton = ctk.ctkCollapsibleButton()
caseNavigatorAreaCollapsibleButton.text = "Case navigator"
self.layout.addWidget(caseNavigatorAreaCollapsibleButton, 0x0020)
# caseNavigatorLayout = qt.QVBoxLayout(caseNavigatorAreaCollapsibleButton)
# Add a case list navigator
from ACIL.ui import CaseNavigatorWidget
self.caseNavigatorWidget = CaseNavigatorWidget(self.moduleName, caseNavigatorAreaCollapsibleButton)
self.caseNavigatorWidget.setup()
# Listen for the event of loading volume
#self.caseNavigatorWidget.addObservable(self.caseNavigatorWidget.EVENT_VOLUME_LOADED, self.onNewVolumeLoaded)
self.layout.addStretch()
self.updateState()
# Connections
self.typesRadioButtonGroup.connect("buttonClicked (QAbstractButton*)", self.__onTypesRadioButtonClicked__)
self.subtypesRadioButtonGroup.connect("buttonClicked (QAbstractButton*)", self.__onSubtypesRadioButtonClicked__)
self.artifactsRadioButtonGroup.connect("buttonClicked (QAbstractButton*)", self.__onSubtypesRadioButtonClicked__)
self.volumeSelector.connect('currentNodeChanged(vtkMRMLNode*)', self.__onCurrentNodeChanged__)
self.loadButton.connect('clicked()', self.openFiducialsFile)
self.removeLastFiducialButton.connect('clicked()', self.__onRemoveLastFiducialButtonClicked__)
# self.saveResultsOpenDirectoryDialogButton.connect('clicked()', self.onOpenDirectoryDialogButtonClicked)
self.saveResultsDirectoryButton.connect("directoryChanged (str)", self.__onSaveResultsDirectoryChanged__)
self.saveResultsButton.connect('clicked()', self.__onSaveResultsButtonClicked__)
self.observers = []
self.observers.append(slicer.mrmlScene.AddObserver(slicer.vtkMRMLScene.NodeAddedEvent, self.__onNodeAddedObserver__))
self.observers.append(slicer.mrmlScene.AddObserver(slicer.vtkMRMLScene.EndCloseEvent, self.__onSceneClosed__))
