def prepare_chain(self): import bio sequence = bio.seq1_3(self.protein_sequence) monomer_sequence = [] m = __import__('lib') for s in sequence: m_obj = getattr(m, 'Type%s' % s) monomer_sequence.append(m_obj()) self.chain_seq = Polymer.Chain(monomer_sequence) print self.name,"Protein sequence", self.protein_sequence return self.chain_seq
def prepare_chain(self): length = self.length chain_seq = bio.prepare_sequence(bio.seq1_3(SEQUENCE_DB[self.seq]), MonomersMJ) self.chain_seq = Polymer.Chain(chain_seq) return self.chain_seq