def prepare_chain(self):
import bio
sequence = bio.seq1_3(self.protein_sequence)
monomer_sequence = []
m = __import__('lib')
for s in sequence:
m_obj = getattr(m, 'Type%s' % s)
monomer_sequence.append(m_obj())
self.chain_seq = Polymer.Chain(monomer_sequence)
print self.name,"Protein sequence", self.protein_sequence
return self.chain_seq
def prepare_chain(self):
length = self.length
chain_seq = bio.prepare_sequence(bio.seq1_3(SEQUENCE_DB[self.seq]), MonomersMJ)
self.chain_seq = Polymer.Chain(chain_seq)
return self.chain_seq
