def setup(params, *args, **kw):
matlab_setup(['MicrotubuleTracker', '-a', 'mt_track_config.xml'],
params=params)
docker_setup('microtubuletracker',
'MicrotubuleTracker',
'matlab_runtime',
params=params)
def setup(params, *args, **kw):
python_setup("RootTipMulti.py", params)
matlab_setup('matlab/maizeG.m', bisque_deps=False, params=params)
docker_setup('roottipmulti',
'RootTipMulti',
'matlab_runtime',
params=params)
def setup(params, *args, **kw):
ensure_matlab(params)
#mex_compile(['vrl_gc.cpp'], where='vrl_tools/maxflow_kolmogorov')
matlab_setup(['GraphcutSegmentation'], params=params)
docker_setup('graphcut',
'GraphcutSegmentation',
'matlab_runtime',
params=params)
def setup(params, *args, **kw):
ensure_matlab(params)
mex_compile(['vrl_gc.cpp'], where='vrl_tools/maxflow_kolmogorov')
matlab_setup(['ImageMatting', '-a', 'vrl_tools'], params=params)
docker_setup('imagematting',
'ImageMatting',
'matlab_runtime',
params=params)
def setup(params, *args, **kw):
matlab_setup('WatershedSegmentation', params=params)
docker_setup('watershedsegmentation',
'WatershedSegmentation',
'matlab_runtime',
params=params)
def setup(*args, **kw):
python_setup('RootTip.py', params=params)
matlab_setup('matlab/araGT.m', bisque_deps=False, params=params)
docker_setup('roottip', "RootTip", "matlab_runtime", params=params)
def setup(params, *args, **kw):
matlab_setup(['Phidias.m', '-a', 'phenotype_descriptors'], params=params)
docker_setup('phidiasanalyze', 'Phidias', 'matlab_runtime', params=params)
def setup(params, *args, **kw):
matlab_setup(['Phidias.m', '-a', 'phenotype_descriptors'], params=params)
docker_setup('phidiasanalyze', 'Phidias', 'matlab_runtime', params=params)
def setup(params, *args, **kw):
matlab_setup('PhidiasModel.m', params=params)
docker_setup('phidiasmodel', 'Phidiasmodel', 'matlab_runtime', params=params)
def setup(params, *args, **kw):
matlab_setup('PhidiasAnnotate.m', params=params)
docker_setup('phidiasannotate',
'PhidiasAnnotate',
'matlab_runtime',
params=params)
def setup(params, *args, **kw):
python_setup('SeedSize.py', params=params)
matlab_setup('matlab/seedSize', bisque_deps=False, params=params)
docker_setup('seedsize', 'SeedSize', 'matlab_runtime', params=params)
def setup(params, *args, **kw):
matlab_setup('PHFDetector', params=params)
docker_setup('phfdetector', 'PHFDetector', 'matlab_runtime', params=params)
def setup(params, *args, **kw):
matlab_setup('NuclearDetector3D', params=params)
docker_setup('n3d', 'NuclearDetector3D', 'matlab_runtime', params=params)
def setup(params, *args, **kw):
matlab_setup('NuclearFilter', params=params)
docker_setup('nuclearfilter',
'NuclearFilter',
'matlab_runtime',
params=params)
def setup(params, *args, **kw):
matlab_setup('PhidiasModel.m', params=params)
docker_setup('phidiasmodel',
'Phidiasmodel',
'matlab_runtime',
params=params)
def setup(params, *args, **kw):
ensure_binary('svm-predict')
ensure_binary('svm-scale')
return matlab_setup('BotanicamTrainer', params=params)
def setup(params, *args, **kw):
matlab_setup('PlantcellTracking', params=params)
docker_setup('plantcelltracking',
'PlantcellTracking',
'matlab_runtime',
params=params)
def setup(params, *args, **kw):
matlab_setup('FluorescentCavities', params=params)
docker_setup('fluorescentcavities',
'FluorescentCavities',
'matlab_runtime',
params=params)
def setup(params, *args, **kw):
matlab_setup('PhidiasAnnotate.m', params=params)
docker_setup('phidiasannotate', 'PhidiasAnnotate', 'matlab_runtime', params=params)
def setup(params, *args, **kw):
ensure_matlab(params)
mex_compile(['vrl_gc.cpp'], where='vrl_tools/maxflow_kolmogorov')
matlab_setup(['PlanteomeSegmenter', '-a', 'vrl_tools'], params=params)
docker_setup('imagematting', 'PlanteomeSegmenter', 'matlab_runtime', params=params)
def setup(params, *args, **kw):
matlab_setup('PlantcellSegment', params=params)
matlab_setup('plantcellsegment',
'PlantcellSegment',
'matlab_runtime',
params=params)
