def finishInit(self):
self.d = self.newDocument(isFirstNewDoc=True)
os.environ['CADNANO_DISCARD_UNSAVED'] = 'True' ## added by Nick
if os.environ.get('CADNANO_DISCARD_UNSAVED', False) and not self.ignoreEnv():
self.sharedApp.dontAskAndJustDiscardUnsavedChanges = True
if os.environ.get('CADNANO_DEFAULT_DOCUMENT', False) and not self.ignoreEnv():
self.sharedApp.shouldPerformBoilerplateStartupScript = True
cadnano.loadAllPlugins()
if "-i" in self.argv:
print "Welcome to cadnano's debug mode!"
# All api shortcut functions have been factored out to the utils module.
# (So the functions are easier to access if running cadnano as part of a larger script!)
ns = cadnano_api.get_api(self)
if readline:
print "Enabling line-completion for standard code.interact mode...\n"
# This is required, even when invoked via ipython, to get completion for a, d, etc.
readline.set_completer(rlcompleter.Completer(ns).complete) # Makes it work :)
readline.parse_and_bind("tab: complete") # Not strictly required when invoked via ipython.
else:
print "No readline/completer available..."
print ns['cadnanohelp']
code.interact("", local=ns)
print "Interactive mode with code.interact complete..."
def finishInit(self):
self.d = self.newDocument(isFirstNewDoc=True)
os.environ['CADNANO_DISCARD_UNSAVED'] = 'True' ## added by Nick
if os.environ.get('CADNANO_DISCARD_UNSAVED',
False) and not self.ignoreEnv():
self.sharedApp.dontAskAndJustDiscardUnsavedChanges = True
if os.environ.get('CADNANO_DEFAULT_DOCUMENT',
False) and not self.ignoreEnv():
self.sharedApp.shouldPerformBoilerplateStartupScript = True
cadnano.loadAllPlugins()
if "-i" in self.argv:
print "Welcome to cadnano's debug mode!"
print "Some handy locals:"
print "\ta\tcadnano.app() (the shared cadnano application object)"
print "\td()\tthe last created Document"
def d():
return self.d
print "\tw()\tshortcut for d().controller().window()"
def w():
return self.d.controller().window()
print "\tp()\tshortcut for d().selectedPart()"
def p():
return self.d.selectedPart()
print "\tpi()\tthe PartItem displaying p()"
def pi():
return w().pathroot.partItemForPart(p())
print "\tvh(i)\tshortcut for p().virtualHelix(i)"
def vh(vhref):
return p().virtualHelix(vhref)
print "\tvhi(i)\tvirtualHelixItem displaying vh(i)"
def vhi(vhref):
partitem = pi()
vHelix = vh(vhref)
return partitem.vhItemForVH(vHelix)
print "\tquit()\tquit (for when the menu fails)"
print "\tgraphicsItm.findChild() see help(pi().findChild)"
interact('', local={'a':self, 'd':d, 'w':w,\
'p':p, 'pi':pi, 'vh':vh, 'vhi':vhi,\
})
def finishInit(self):
self.d = self.newDocument(isFirstNewDoc=True)
os.environ['CADNANO_DISCARD_UNSAVED'] = 'True' ## added by Nick
if os.environ.get('CADNANO_DISCARD_UNSAVED', False) and not self.ignoreEnv():
self.sharedApp.dontAskAndJustDiscardUnsavedChanges = True
if os.environ.get('CADNANO_DEFAULT_DOCUMENT', False) and not self.ignoreEnv():
self.sharedApp.shouldPerformBoilerplateStartupScript = True
cadnano.loadAllPlugins()
if "-i" in self.argv:
print "Welcome to cadnano's debug mode!"
print "Some handy locals:"
print "\ta\tcadnano.app() (the shared cadnano application object)"
print "\td()\tthe last created Document"
def d():
return self.d
print "\tw()\tshortcut for d().controller().window()"
def w():
return self.d.controller().window()
print "\tp()\tshortcut for d().selectedPart()"
def p():
return self.d.selectedPart()
print "\tpi()\tthe PartItem displaying p()"
def pi():
return w().pathroot.partItemForPart(p())
print "\tvh(i)\tshortcut for p().virtualHelix(i)"
def vh(vhref):
return p().virtualHelix(vhref)
print "\tvhi(i)\tvirtualHelixItem displaying vh(i)"
def vhi(vhref):
partitem = pi()
vHelix = vh(vhref)
return partitem.vhItemForVH(vHelix)
print "\tquit()\tquit (for when the menu fails)"
print "\tgraphicsItm.findChild() see help(pi().findChild)"
interact('', local={'a':self, 'd':d, 'w':w,\
'p':p, 'pi':pi, 'vh':vh, 'vhi':vhi,\
})
def addPluginAtPath(self, fname):
self.fileopendialog.close()
fname = str(fname[0])
print "Attempting to open plugin %s" % fname
try:
zf = zipfile.ZipFile(fname, 'r')
except Exception as e:
self.failWithMsg("Plugin file seems corrupt: %s." % e)
return
tdir = tempfile.mkdtemp()
try:
for f in zf.namelist():
if f.endswith('/'):
os.makedirs(os.path.join(tdir, f))
for f in zf.namelist():
if not f.endswith('/'):
zf.extract(f, tdir)
except Exception as e:
self.failWithMsg("Extraction of plugin archive failed: %s." % e)
return
filesInZip = [(f, os.path.join(tdir, f)) for f in os.listdir(tdir)]
try:
self.confirmDestructiveIfNecessary(filesInZip)
self.removePluginsToBeOverwritten(filesInZip)
self.movePluginsIntoPluginsFolder(filesInZip)
except OSError:
print "Couldn't copy files into plugin directory, attempting\
again after boosting privileges."
if platform.system() == 'Darwin':
self.darwinAuthedMvPluginsIntoPluginsFolder(filesInZip)
elif platform.system() == 'Linux':
self.linuxAuthedMvPluginsIntoPluginsFolder(filesInZip)
else:
print "Can't boost privelages on platform %s" % platform.system(
)
loadedAPlugin = cadnano.loadAllPlugins()
if not loadedAPlugin:
print "Unable to load anythng from plugin %s" % fname
self.readPreferences()
shutil.rmtree(tdir)
def addPluginAtPath(self, fname):
self.fileopendialog.close()
fname = str(fname[0])
print "Attempting to open plugin %s"%fname
try:
zf = zipfile.ZipFile(fname, 'r')
except Exception as e:
self.failWithMsg("Plugin file seems corrupt: %s."%e)
return
tdir = tempfile.mkdtemp()
try:
for f in zf.namelist():
if f.endswith('/'):
os.makedirs(os.path.join(tdir,f))
for f in zf.namelist():
if not f.endswith('/'):
zf.extract(f, tdir)
except Exception as e:
self.failWithMsg("Extraction of plugin archive failed: %s."%e)
return
filesInZip = [(f, os.path.join(tdir, f)) for f in os.listdir(tdir)]
try:
self.confirmDestructiveIfNecessary(filesInZip)
self.removePluginsToBeOverwritten(filesInZip)
self.movePluginsIntoPluginsFolder(filesInZip)
except OSError:
print "Couldn't copy files into plugin directory, attempting\
again after boosting privileges."
if platform.system() == 'Darwin':
self.darwinAuthedMvPluginsIntoPluginsFolder(filesInZip)
elif platform.system() == 'Linux':
self.linuxAuthedMvPluginsIntoPluginsFolder(filesInZip)
else:
print "Can't boost privelages on platform %s"%platform.system()
loadedAPlugin = cadnano.loadAllPlugins()
if not loadedAPlugin:
print "Unable to load anythng from plugin %s"%fname
self.readPreferences()
shutil.rmtree(tdir)