def finishInit(self): self.d = self.newDocument(isFirstNewDoc=True) os.environ['CADNANO_DISCARD_UNSAVED'] = 'True' ## added by Nick if os.environ.get('CADNANO_DISCARD_UNSAVED', False) and not self.ignoreEnv(): self.sharedApp.dontAskAndJustDiscardUnsavedChanges = True if os.environ.get('CADNANO_DEFAULT_DOCUMENT', False) and not self.ignoreEnv(): self.sharedApp.shouldPerformBoilerplateStartupScript = True cadnano.loadAllPlugins() if "-i" in self.argv: print "Welcome to cadnano's debug mode!" # All api shortcut functions have been factored out to the utils module. # (So the functions are easier to access if running cadnano as part of a larger script!) ns = cadnano_api.get_api(self) if readline: print "Enabling line-completion for standard code.interact mode...\n" # This is required, even when invoked via ipython, to get completion for a, d, etc. readline.set_completer(rlcompleter.Completer(ns).complete) # Makes it work :) readline.parse_and_bind("tab: complete") # Not strictly required when invoked via ipython. else: print "No readline/completer available..." print ns['cadnanohelp'] code.interact("", local=ns) print "Interactive mode with code.interact complete..."
def finishInit(self): self.d = self.newDocument(isFirstNewDoc=True) os.environ['CADNANO_DISCARD_UNSAVED'] = 'True' ## added by Nick if os.environ.get('CADNANO_DISCARD_UNSAVED', False) and not self.ignoreEnv(): self.sharedApp.dontAskAndJustDiscardUnsavedChanges = True if os.environ.get('CADNANO_DEFAULT_DOCUMENT', False) and not self.ignoreEnv(): self.sharedApp.shouldPerformBoilerplateStartupScript = True cadnano.loadAllPlugins() if "-i" in self.argv: print "Welcome to cadnano's debug mode!" print "Some handy locals:" print "\ta\tcadnano.app() (the shared cadnano application object)" print "\td()\tthe last created Document" def d(): return self.d print "\tw()\tshortcut for d().controller().window()" def w(): return self.d.controller().window() print "\tp()\tshortcut for d().selectedPart()" def p(): return self.d.selectedPart() print "\tpi()\tthe PartItem displaying p()" def pi(): return w().pathroot.partItemForPart(p()) print "\tvh(i)\tshortcut for p().virtualHelix(i)" def vh(vhref): return p().virtualHelix(vhref) print "\tvhi(i)\tvirtualHelixItem displaying vh(i)" def vhi(vhref): partitem = pi() vHelix = vh(vhref) return partitem.vhItemForVH(vHelix) print "\tquit()\tquit (for when the menu fails)" print "\tgraphicsItm.findChild() see help(pi().findChild)" interact('', local={'a':self, 'd':d, 'w':w,\ 'p':p, 'pi':pi, 'vh':vh, 'vhi':vhi,\ })
def finishInit(self): self.d = self.newDocument(isFirstNewDoc=True) os.environ['CADNANO_DISCARD_UNSAVED'] = 'True' ## added by Nick if os.environ.get('CADNANO_DISCARD_UNSAVED', False) and not self.ignoreEnv(): self.sharedApp.dontAskAndJustDiscardUnsavedChanges = True if os.environ.get('CADNANO_DEFAULT_DOCUMENT', False) and not self.ignoreEnv(): self.sharedApp.shouldPerformBoilerplateStartupScript = True cadnano.loadAllPlugins() if "-i" in self.argv: print "Welcome to cadnano's debug mode!" print "Some handy locals:" print "\ta\tcadnano.app() (the shared cadnano application object)" print "\td()\tthe last created Document" def d(): return self.d print "\tw()\tshortcut for d().controller().window()" def w(): return self.d.controller().window() print "\tp()\tshortcut for d().selectedPart()" def p(): return self.d.selectedPart() print "\tpi()\tthe PartItem displaying p()" def pi(): return w().pathroot.partItemForPart(p()) print "\tvh(i)\tshortcut for p().virtualHelix(i)" def vh(vhref): return p().virtualHelix(vhref) print "\tvhi(i)\tvirtualHelixItem displaying vh(i)" def vhi(vhref): partitem = pi() vHelix = vh(vhref) return partitem.vhItemForVH(vHelix) print "\tquit()\tquit (for when the menu fails)" print "\tgraphicsItm.findChild() see help(pi().findChild)" interact('', local={'a':self, 'd':d, 'w':w,\ 'p':p, 'pi':pi, 'vh':vh, 'vhi':vhi,\ })
def addPluginAtPath(self, fname): self.fileopendialog.close() fname = str(fname[0]) print "Attempting to open plugin %s" % fname try: zf = zipfile.ZipFile(fname, 'r') except Exception as e: self.failWithMsg("Plugin file seems corrupt: %s." % e) return tdir = tempfile.mkdtemp() try: for f in zf.namelist(): if f.endswith('/'): os.makedirs(os.path.join(tdir, f)) for f in zf.namelist(): if not f.endswith('/'): zf.extract(f, tdir) except Exception as e: self.failWithMsg("Extraction of plugin archive failed: %s." % e) return filesInZip = [(f, os.path.join(tdir, f)) for f in os.listdir(tdir)] try: self.confirmDestructiveIfNecessary(filesInZip) self.removePluginsToBeOverwritten(filesInZip) self.movePluginsIntoPluginsFolder(filesInZip) except OSError: print "Couldn't copy files into plugin directory, attempting\ again after boosting privileges." if platform.system() == 'Darwin': self.darwinAuthedMvPluginsIntoPluginsFolder(filesInZip) elif platform.system() == 'Linux': self.linuxAuthedMvPluginsIntoPluginsFolder(filesInZip) else: print "Can't boost privelages on platform %s" % platform.system( ) loadedAPlugin = cadnano.loadAllPlugins() if not loadedAPlugin: print "Unable to load anythng from plugin %s" % fname self.readPreferences() shutil.rmtree(tdir)
def addPluginAtPath(self, fname): self.fileopendialog.close() fname = str(fname[0]) print "Attempting to open plugin %s"%fname try: zf = zipfile.ZipFile(fname, 'r') except Exception as e: self.failWithMsg("Plugin file seems corrupt: %s."%e) return tdir = tempfile.mkdtemp() try: for f in zf.namelist(): if f.endswith('/'): os.makedirs(os.path.join(tdir,f)) for f in zf.namelist(): if not f.endswith('/'): zf.extract(f, tdir) except Exception as e: self.failWithMsg("Extraction of plugin archive failed: %s."%e) return filesInZip = [(f, os.path.join(tdir, f)) for f in os.listdir(tdir)] try: self.confirmDestructiveIfNecessary(filesInZip) self.removePluginsToBeOverwritten(filesInZip) self.movePluginsIntoPluginsFolder(filesInZip) except OSError: print "Couldn't copy files into plugin directory, attempting\ again after boosting privileges." if platform.system() == 'Darwin': self.darwinAuthedMvPluginsIntoPluginsFolder(filesInZip) elif platform.system() == 'Linux': self.linuxAuthedMvPluginsIntoPluginsFolder(filesInZip) else: print "Can't boost privelages on platform %s"%platform.system() loadedAPlugin = cadnano.loadAllPlugins() if not loadedAPlugin: print "Unable to load anythng from plugin %s"%fname self.readPreferences() shutil.rmtree(tdir)