def main(global_config, **settings):
"""
This function returns a Pyramid WSGI application.
"""
import inspect
set_cfront_settings(settings)
set_genomes_settings(settings)
engine = engine_from_config(settings, 'sqlalchemy.')
Session.configure(bind=engine)
Base.metadata.bind = engine
config = Configurator(settings=settings)
#static routes
config.add_static_view('/css', 'static/css', cache_max_age=3600)
config.add_static_view('/js', 'static/js', cache_max_age=3600)
config.add_static_view('/img', 'static/img', cache_max_age=3600)
config.add_static_view('/pages', 'static/pages', cache_max_age=3600)
config.add_static_view('/files', 'static/files', cache_max_age=3600)
#page routes
config.add_route('about', '/about', factory=PageResourceFactory)
config.add_route('batch', '/batch/{batch_key}', factory = BatchResourceFactory)
config.add_route('submit', '/', factory=PageResourceFactory)
config.add_route('job', '/job/{job_key}', factory=PageResourceFactory)
config.add_route('readonly', '/readonly',factory=PageResourceFactory)
config.add_route('readout', '/guides/{job_key}',factory=PageResourceFactory)
config.add_route('nickase', '/nick/{job_key}',factory=PageResourceFactory)
config.add_route('downloads', '/downloads/{job_key}',factory=PageResourceFactory)
#export routes
config.add_route('gb_all_nicks', '/export/nicks_gb/{job_key}',factory=JobResourceFactory)
config.add_route('gb_one_nick', '/export/nicks_gb/{job_key}/{spacerfwdid}/{spacerrevid}',factory=JobResourceFactory)
config.add_route('csv_one_spacer', '/export/spacer_csv/{job_key}/{spacerid}',factory=JobResourceFactory)
config.add_route('csv_all_guides', '/export/csv_all_guides/{job_key}',factory=JobResourceFactory)
config.add_route('gb_all_guides', '/export/guides_gb/{job_key}',factory=JobResourceFactory)
#ajax routes
config.add_route('job_check_spacers','/j/check_spacers/{job_key}',factory=JobResourceFactory)
config.add_route('job_post_new', '/j/post_new')
config.add_route('jobs_from_fasta', '/j/from_fasta')
config.add_route('job_from_spacers', '/j/from_spacers')
config.add_route('job_retrieve_spacers', '/j/retrieve_spacers/{job_key}',factory=JobResourceFactory)
config.add_route('job_email_complete', '/j/email_complete/{job_key}',factory=JobResourceFactory)
config.add_route('spacer_retrieve_hits', '/s/retrieve_hits/{spacer_id}')
config.add_route('spacer_check_hits', '/s/check_hits/{spacer_id}')
config.add_route('spacer_retrieve_regions', '/s/retrieve_regions/{spacer_id}')
#rest routes
config.add_route('job_rest', '/r/job/{job_key}',factory=JobResourceFactory)
config.add_route('batch_rest', '/r/batch/{batch_key}',factory=BatchResourceFactory)
config.add_route('spacer_rest', '/r/spacer/{spacer_id}')
config.add_route('maintainance','/sorry')
config.scan()
return config.make_wsgi_app()
def main(global_config, **settings):
"""
This function returns a Pyramid WSGI application.
"""
import inspect
set_cfront_settings(settings)
set_genomes_settings(settings)
engine = engine_from_config(settings, 'sqlalchemy.')
Session.configure(bind=engine)
Base.metadata.bind = engine
config = Configurator(settings=settings)
config.include('pyramid_mako')
#static routes
config.add_static_view('/v2/css', 'static/css', cache_max_age=3600)
config.add_static_view('/v2/js', 'static/js', cache_max_age=3600)
config.add_static_view('/img', 'static/img', cache_max_age=3600)
config.add_static_view('/pages', 'static/pages', cache_max_age=3600)
config.add_static_view('/files', 'static/files', cache_max_age=3600)
#page routes
config.add_route('splash_v2', '/v2', factory=PageResourceFactory)
config.add_route('gene_results_v2', '/v2/{assembly}/{geneid}/gene_results', factory=PageResourceFactory)
config.add_route('submit_v2', '/v2/{assembly}/submit', factory=PageResourceFactory)
config.add_route('genes_autocomplete_array', '/v2/{assembly}/gene_names.json')
config.add_route('genes_autocomplete_info', '/v2/{assembly}/genes_info.json')
config.add_route('gene_genbank', '/v2/{assembly}/{geneid}/gene.gb')
config.add_route('gene_genbank_spacer', '/v2/{assembly}/{geneid}/{tool}/{guide_sequence}/guide.gb')
config.add_route('gene_genbank_all_spacers', '/v2/{assembly}/{geneid}/top_spacers.gb')
config.add_route('gene_genbank_selected_spacers', '/v2/{assembly}/{geneid}/selected_spacers.gb')
config.add_route('gene_fasta', '/v2/{assembly}/{geneid}/gene.fa')
config.add_route('gene_genbank_json', '/v2/{assembly}/{geneid}/genbank.json')
config.add_route('gene_sequence', '/v2/{assembly}/{geneid}/sequence.json')
config.add_route('job_data','/v2/{assembly}/{geneid}/job.json')
config.add_route('email_all_genbank', '/v2/{assembly}/{geneid}/{email}/email_all_genbank')
config.add_route('about', '/about', factory=PageResourceFactory)
config.add_route('batch', '/v1/batch/{batch_key}', factory = BatchResourceFactory)
config.add_route('submit', '/', factory=PageResourceFactory)
config.add_route('job', '/v1/job/{job_key}', factory=PageResourceFactory)
config.add_route('readonly', '/readonly',factory=PageResourceFactory)
config.add_route('readout', '/v1/guides/{job_key}',factory=PageResourceFactory)
config.add_route('nickase', '/v1/nick/{job_key}',factory=PageResourceFactory)
config.add_route('downloads', '/v1/downloads/{job_key}',factory=PageResourceFactory)
#export routes
config.add_route('gb_all_nicks', '/v1/export/nicks_gb/{job_key}',factory=JobResourceFactory)
config.add_route('gb_one_nick', '/v1/export/nicks_gb/{job_key}/{spacerfwdid}/{spacerrevid}',factory=JobResourceFactory)
config.add_route('csv_one_spacer', '/v1/export/spacer_csv/{job_key}/{spacerid}',factory=JobResourceFactory)
config.add_route('csv_all_guides', '/v1/export/csv_all_guides/{job_key}',factory=JobResourceFactory)
config.add_route('gb_all_guides', '/v1/export/guides_gb/{job_key}',factory=JobResourceFactory)
#v2 ajax routes
config.add_route('v2_query_gene', '/v2/{assembly}/{geneid}/{email}/query_gene')
#ajax routes
config.add_route('job_check_spacers','/j/check_spacers/{job_key}',factory=JobResourceFactory)
config.add_route('job_post_new', '/j/post_new')
config.add_route('jobs_from_fasta', '/j/from_fasta')
config.add_route('job_from_spacers', '/j/from_spacers')
config.add_route('job_retrieve_spacers', '/j/retrieve_spacers/{job_key}',factory=JobResourceFactory)
config.add_route('job_email_complete', '/j/email_complete/{job_key}',factory=JobResourceFactory)
config.add_route('spacer_retrieve_hits', '/s/retrieve_hits/{spacer_id}')
config.add_route('spacer_check_hits', '/s/check_hits/{spacer_id}')
config.add_route('spacer_retrieve_regions', '/s/retrieve_regions/{spacer_id}')
#rest routes
config.add_route('job_rest', '/r/job/{job_key}',factory=JobResourceFactory)
config.add_route('batch_rest', '/r/batch/{batch_key}',factory=BatchResourceFactory)
config.add_route('spacer_rest', '/r/spacer/{spacer_id}')
config.add_route('maintainance','/sorry')
config.scan()
return config.make_wsgi_app()
def main(global_config, **settings):
"""
This function returns a Pyramid WSGI application.
"""
import inspect
set_cfront_settings(settings)
set_genomes_settings(settings)
engine = engine_from_config(settings, 'sqlalchemy.')
Session.configure(bind=engine)
Base.metadata.bind = engine
config = Configurator(settings=settings)
#static routes
config.add_static_view('/css', 'static/css', cache_max_age=3600)
config.add_static_view('/js', 'static/js', cache_max_age=3600)
config.add_static_view('/img', 'static/img', cache_max_age=3600)
config.add_static_view('/pages', 'static/pages', cache_max_age=3600)
config.add_static_view('/files', 'static/files', cache_max_age=3600)
#page routes
config.add_route('about', '/about', factory=PageResourceFactory)
config.add_route('batch',
'/batch/{batch_key}',
factory=BatchResourceFactory)
config.add_route('submit', '/', factory=PageResourceFactory)
config.add_route('job', '/job/{job_key}', factory=PageResourceFactory)
config.add_route('readonly', '/readonly', factory=PageResourceFactory)
config.add_route('readout',
'/guides/{job_key}',
factory=PageResourceFactory)
config.add_route('nickase', '/nick/{job_key}', factory=PageResourceFactory)
config.add_route('downloads',
'/downloads/{job_key}',
factory=PageResourceFactory)
#export routes
config.add_route('gb_all_nicks',
'/export/nicks_gb/{job_key}',
factory=JobResourceFactory)
config.add_route('gb_one_nick',
'/export/nicks_gb/{job_key}/{spacerfwdid}/{spacerrevid}',
factory=JobResourceFactory)
config.add_route('csv_one_spacer',
'/export/spacer_csv/{job_key}/{spacerid}',
factory=JobResourceFactory)
config.add_route('csv_all_guides',
'/export/csv_all_guides/{job_key}',
factory=JobResourceFactory)
config.add_route('gb_all_guides',
'/export/guides_gb/{job_key}',
factory=JobResourceFactory)
#ajax routes
config.add_route('job_check_spacers',
'/j/check_spacers/{job_key}',
factory=JobResourceFactory)
config.add_route('job_post_new', '/j/post_new')
config.add_route('jobs_from_fasta', '/j/from_fasta')
config.add_route('job_from_spacers', '/j/from_spacers')
config.add_route('job_retrieve_spacers',
'/j/retrieve_spacers/{job_key}',
factory=JobResourceFactory)
config.add_route('job_email_complete',
'/j/email_complete/{job_key}',
factory=JobResourceFactory)
config.add_route('spacer_retrieve_hits', '/s/retrieve_hits/{spacer_id}')
config.add_route('spacer_check_hits', '/s/check_hits/{spacer_id}')
config.add_route('spacer_retrieve_regions',
'/s/retrieve_regions/{spacer_id}')
#rest routes
config.add_route('job_rest',
'/r/job/{job_key}',
factory=JobResourceFactory)
config.add_route('batch_rest',
'/r/batch/{batch_key}',
factory=BatchResourceFactory)
config.add_route('spacer_rest', '/r/spacer/{spacer_id}')
config.add_route('maintainance', '/sorry')
config.scan()
return config.make_wsgi_app()
