# sorts jobs to process recent submissions and non-batch jobs first
def priority(j):
# return 1 * j.id
from random import random
f = 1 if random() > 0.5 else -1
if j.key == "7956546276189290":
return -100000
if j.batch is not None:
return 100000000
else:
return f * j.id
top_job = sorted(selected_hit_jobs, key=priority)[0]
if not top_job in Session:
top_job = Session.merge(j)
# spacers may be deleted from the session in the interior of this loop
for i, s in enumerate([s for s in top_job.spacers if s.score is None][:2]):
if not s in Session:
s = Session.merge(s)
with transaction.manager:
try:
print "Computing hits for spacer: {0} (Job {1})".format(s.id, j.id)
genome_db.compute_hits_for_spacer(s.id)
except JobERR, e:
print "excepted a job/spacer error on COMPUTE for job {0}".format(s.job.id, top_job)
except SpacerERR, e:
print "excepted a spacer error for spacer id {0}".format(s.id)
def main():
proc.daemon=True
proc.start()
procs.append(proc)
if len(selected_hit_jobs) > 0:
with transaction.manager:
def priority(j):
from random import random
f = 1 if random() > .5 else -1
if j.batch is not None: return 100000000
else: return f* j.id
for i,j in enumerate(selected_hit_jobs):
if not j in Session:
selected_hit_jobs[i] = Session.merge(j)
batched_jobs = [j for j in selected_hit_jobs if j.batch is not None]
#sorts jobs to process recent submissions and non-batch jobs first
top_jobs = sorted(selected_hit_jobs, key = priority)[:12]
for top_job in top_jobs:
if not top_job in Session: top_job = Session.merge(top_job)
#spacers may be deleted from the session in the interior of this loop
print "GENOME NAME: {0}".format(top_job.genome_name)
print "SAVING ID INTO QUEUE", top_job.spacers[0]
for i,s in enumerate([s for s in top_job.spacers if s.score is None][:2]):
jobs_q.put({"genome_name":s.job.genome_name,
"guide":s.guide,
)
proc.daemon=True
proc.start()
procs.append(proc)
top_job_id = []
if len(selected_hit_jobs) > 0:
with transaction.manager:
def priority(j):
from random import random
f = 1 if random() > .5 else -1
return f* j.id
for i,j in enumerate(selected_hit_jobs):
if not j in Session:
selected_hit_jobs[i] = Session.merge(j)
single_jobs = [j for j in selected_hit_jobs if j.batch is None]
batched_jobs = [j for j in selected_hit_jobs if j.batch is not None]
#sorts jobs to process recent submissions and non-batch jobs first
single_jobs = sorted(single_jobs, key = priority)
top_jobs = (single_jobs + batched_jobs)[:12]
for top_job in top_jobs:
if not top_job in Session: top_job = Session.merge(top_job)
top_job_id.append(top_job.id)
#spacers may be deleted from the session in the interior of this loop
print "GENOME NAME: {0}".format(top_job.genome_name)
print "SAVING ID INTO QUEUE", top_job.spacers[0]
for i,s in enumerate([s for s in top_job.spacers if s.score is None][:2]):
]
if len(selected_hit_jobs) > 0:
batched_jobs = [j for j in selected_hit_jobs if j.batch is not None]
#sorts jobs to process recent submissions and non-batch jobs first
def priority(j):
#return 1 * j.id
from random import random
f = 1 if random() > .5 else -1
if j.key == "7956546276189290": return -100000
if j.batch is not None: return 100000000
else: return f * j.id
top_job = sorted(selected_hit_jobs, key=priority)[0]
if not top_job in Session: top_job = Session.merge(j)
#spacers may be deleted from the session in the interior of this loop
for i, s in enumerate([s for s in top_job.spacers
if s.score is None][:2]):
if not s in Session: s = Session.merge(s)
with transaction.manager:
try:
print "Computing hits for spacer: {0} (Job {1})".format(
s.id, j.id)
genome_db.compute_hits_for_spacer(s.id)
except JobERR, e:
print "excepted a job/spacer error on COMPUTE for job {0}".format(
s.job.id, top_job)
except SpacerERR, e:
print "excepted a spacer error for spacer id {0}".format(
s.id)
if len(selected_hit_jobs) > 0:
batched_jobs = [j for j in selected_hit_jobs if j.batch is not None]
#sorts jobs to process recent submissions and non-batch jobs first
def priority(j):
#return 1 * j.id
from random import random
f = 1 if random() > .5 else -1
if j.key == "7956546276189290" : return -100000
if j.batch is not None: return 100000000
else: return f* j.id
top_job = sorted(selected_hit_jobs, key = priority)[0]
if not top_job in Session: top_job = Session.merge(j)
#spacers may be deleted from the session in the interior of this loop
for i,s in enumerate([s for s in top_job.spacers if s.score is None][:2]):
if not s in Session: s = Session.merge(s)
with transaction.manager:
try:
print "Computing hits for spacer: {0} (Job {1})".format(s.id, j.id)
genome_db.compute_hits_for_spacer(s.id)
except JobERR, e:
print "excepted a job/spacer error on COMPUTE for job {0}".format(s.job.id, top_job)
except SpacerERR, e:
print "excepted a spacer error for spacer id {0}".format(s.id)
def main():
parser = argparse.ArgumentParser()
parser.add_argument('--reset','-r',dest="reset",
