def to_json(self): json_dict = _o({ 'position': self.position, 'residue_from': self.residue_from, 'residue_to': self.residue_to }) return json_dict
def to_json(self): query_type = self.get_type() json_dict = _o(type=query_type) json_dict['condition_entity'] = self.condition_entity.to_json() json_dict['target_entity'] = self.target_entity.to_json() json_dict['direction'] = self.direction return json_dict
def to_json(self): json_dict = _o({'mod_type': self.mod_type}) if self.residue is not None: json_dict['residue'] = self.residue if self.position is not None: json_dict['position'] = self.position json_dict['is_modified'] = self.is_modified return json_dict
def to_json(self): query_type = self.get_type() json_dict = _o(type=query_type) json_dict['entity'] = self.entity.to_json() json_dict['stmt_type'] = self.stmt_type json_dict['entity_role'] = self.entity_role json_dict['terminal_ns'] = self.terminal_ns return json_dict
def to_json(self): query_type = self.get_type() json_dict = _o(type=query_type) json_dict['entity'] = self.entity.to_json() json_dict['pattern_type'] = self.pattern_type json_dict['quantity'] = {} json_dict['quantity']['type'] = self.quant_type json_dict['quantity']['value'] = self.quant_value return json_dict
def to_json(self): json_dict = _o({'name': self.name}) if self.mods: json_dict['mods'] = [mc.to_json() for mc in self.mods] if self.mutations: json_dict['mutations'] = [mc.to_json() for mc in self.mutations] if self.bound_conditions: json_dict['bound_conditions'] = [bc.to_json() for bc in self.bound_conditions] if self.activity is not None: json_dict['activity'] = self.activity.to_json() if self.location is not None: json_dict['location'] = self.location json_dict['db_refs'] = self.db_refs return json_dict
def to_json(self): query_type = self.get_type() json_dict = _o(type=query_type) json_dict['path'] = self.path_stmt.to_json() json_dict['entity_constraints'] = {} if self.include_entities: json_dict['entity_constraints']['include'] = [ ec.to_json() for ec in self.include_entities] if self.exclude_entities: json_dict['entity_constraints']['exclude'] = [ ec.to_json() for ec in self.exclude_entities] json_dict['relationship_constraints'] = {} if self.include_rels: json_dict['relationship_constraints']['include'] = [ {'type': rel} for rel in self.include_rels] if self.exclude_rels: json_dict['relationship_constraints']['exclude'] = [ {'type': rel} for rel in self.exclude_rels] return json_dict
def to_json(self): """Convert the evidence object into a JSON dict.""" json_dict = _o({}) if self.source_api: json_dict['source_api'] = self.source_api if self.pmid: json_dict['pmid'] = self.pmid if self.source_id: json_dict['source_id'] = self.source_id if self.text: json_dict['text'] = self.text if self.annotations: json_dict['annotations'] = self.annotations if self.epistemics: json_dict['epistemics'] = self.epistemics if self.context: json_dict['context'] = self.context.to_json() if self.text_refs: json_dict['text_refs'] = self.text_refs json_dict['source_hash'] = self.get_source_hash() if self.stmt_tag: json_dict['stmt_tag'] = self.stmt_tag return json_dict
def to_json(self): json_dict = _o({'name': self.name}) json_dict['db_refs'] = self.db_refs return json_dict
def to_json(self): json_dict = _o({'position': self.position, 'residue_from': self.residue_from, 'residue_to': self.residue_to}) return json_dict
def to_json(self): json_dict = _o({'activity_type': self.activity_type, 'is_active': self.is_active}) return json_dict
def to_json(self): json_dict = _o({'polarity': self.polarity}) if self.adjectives: json_dict['adjectives'] = self.adjectives return json_dict
def to_json(self): json_dict = _o({ 'activity_type': self.activity_type, 'is_active': self.is_active }) return json_dict
def to_json(self): json_dict = _o({ 'agent': self.agent.to_json(), 'is_bound': self.is_bound }) return json_dict
def to_json(self): json_dict = _o({'agent': self.agent.to_json(), 'is_bound': self.is_bound}) return json_dict
def to_json(self): json_dict = _o({'type': 'qualitative', 'polarity': self.polarity}) if self.adjectives: json_dict['adjectives'] = self.adjectives return json_dict