def to_json(self):
json_dict = _o({
'position': self.position,
'residue_from': self.residue_from,
'residue_to': self.residue_to
})
return json_dict
def to_json(self):
query_type = self.get_type()
json_dict = _o(type=query_type)
json_dict['condition_entity'] = self.condition_entity.to_json()
json_dict['target_entity'] = self.target_entity.to_json()
json_dict['direction'] = self.direction
return json_dict
def to_json(self):
json_dict = _o({'mod_type': self.mod_type})
if self.residue is not None:
json_dict['residue'] = self.residue
if self.position is not None:
json_dict['position'] = self.position
json_dict['is_modified'] = self.is_modified
return json_dict
def to_json(self):
json_dict = _o({'mod_type': self.mod_type})
if self.residue is not None:
json_dict['residue'] = self.residue
if self.position is not None:
json_dict['position'] = self.position
json_dict['is_modified'] = self.is_modified
return json_dict
def to_json(self):
query_type = self.get_type()
json_dict = _o(type=query_type)
json_dict['entity'] = self.entity.to_json()
json_dict['stmt_type'] = self.stmt_type
json_dict['entity_role'] = self.entity_role
json_dict['terminal_ns'] = self.terminal_ns
return json_dict
def to_json(self):
query_type = self.get_type()
json_dict = _o(type=query_type)
json_dict['entity'] = self.entity.to_json()
json_dict['pattern_type'] = self.pattern_type
json_dict['quantity'] = {}
json_dict['quantity']['type'] = self.quant_type
json_dict['quantity']['value'] = self.quant_value
return json_dict
def to_json(self):
json_dict = _o({'name': self.name})
if self.mods:
json_dict['mods'] = [mc.to_json() for mc in self.mods]
if self.mutations:
json_dict['mutations'] = [mc.to_json() for mc in self.mutations]
if self.bound_conditions:
json_dict['bound_conditions'] = [bc.to_json() for bc in
self.bound_conditions]
if self.activity is not None:
json_dict['activity'] = self.activity.to_json()
if self.location is not None:
json_dict['location'] = self.location
json_dict['db_refs'] = self.db_refs
return json_dict
def to_json(self):
json_dict = _o({'name': self.name})
if self.mods:
json_dict['mods'] = [mc.to_json() for mc in self.mods]
if self.mutations:
json_dict['mutations'] = [mc.to_json() for mc in self.mutations]
if self.bound_conditions:
json_dict['bound_conditions'] = [bc.to_json() for bc in
self.bound_conditions]
if self.activity is not None:
json_dict['activity'] = self.activity.to_json()
if self.location is not None:
json_dict['location'] = self.location
json_dict['db_refs'] = self.db_refs
return json_dict
def to_json(self):
query_type = self.get_type()
json_dict = _o(type=query_type)
json_dict['path'] = self.path_stmt.to_json()
json_dict['entity_constraints'] = {}
if self.include_entities:
json_dict['entity_constraints']['include'] = [
ec.to_json() for ec in self.include_entities]
if self.exclude_entities:
json_dict['entity_constraints']['exclude'] = [
ec.to_json() for ec in self.exclude_entities]
json_dict['relationship_constraints'] = {}
if self.include_rels:
json_dict['relationship_constraints']['include'] = [
{'type': rel} for rel in self.include_rels]
if self.exclude_rels:
json_dict['relationship_constraints']['exclude'] = [
{'type': rel} for rel in self.exclude_rels]
return json_dict
def to_json(self):
"""Convert the evidence object into a JSON dict."""
json_dict = _o({})
if self.source_api:
json_dict['source_api'] = self.source_api
if self.pmid:
json_dict['pmid'] = self.pmid
if self.source_id:
json_dict['source_id'] = self.source_id
if self.text:
json_dict['text'] = self.text
if self.annotations:
json_dict['annotations'] = self.annotations
if self.epistemics:
json_dict['epistemics'] = self.epistemics
if self.context:
json_dict['context'] = self.context.to_json()
if self.text_refs:
json_dict['text_refs'] = self.text_refs
json_dict['source_hash'] = self.get_source_hash()
if self.stmt_tag:
json_dict['stmt_tag'] = self.stmt_tag
return json_dict
def to_json(self):
json_dict = _o({'name': self.name})
json_dict['db_refs'] = self.db_refs
return json_dict
def to_json(self):
json_dict = _o({'position': self.position,
'residue_from': self.residue_from,
'residue_to': self.residue_to})
return json_dict
def to_json(self):
json_dict = _o({'activity_type': self.activity_type,
'is_active': self.is_active})
return json_dict
def to_json(self):
json_dict = _o({'polarity': self.polarity})
if self.adjectives:
json_dict['adjectives'] = self.adjectives
return json_dict
def to_json(self):
json_dict = _o({
'activity_type': self.activity_type,
'is_active': self.is_active
})
return json_dict
def to_json(self):
json_dict = _o({'name': self.name})
json_dict['db_refs'] = self.db_refs
return json_dict
def to_json(self):
json_dict = _o({
'agent': self.agent.to_json(),
'is_bound': self.is_bound
})
return json_dict
def to_json(self):
json_dict = _o({'polarity': self.polarity})
if self.adjectives:
json_dict['adjectives'] = self.adjectives
return json_dict
def to_json(self):
json_dict = _o({'agent': self.agent.to_json(),
'is_bound': self.is_bound})
return json_dict
def to_json(self):
json_dict = _o({'type': 'qualitative', 'polarity': self.polarity})
if self.adjectives:
json_dict['adjectives'] = self.adjectives
return json_dict
