def initNodes(self):
""" DOCSTRING: """
if (type(self.__networkParams['nodeType']) == type(co.pcoIntegrateFire())):
self.__initNode_pcoIntegrateFire()
self.__nodesInitialized = True
else:
raise LookupError ('initNetworkNodes: nodeType invalid or not yet defined')
import conedy as co
N = co.network()
co.set("samplingTime", 1000.0)
nodeNumber = N.addNode(co.pcoIntegrateFire())
N.observeTime("output/evolve2.py.series")
N.observe(nodeNumber, "output/evolve2.py.series")
for i in range(0, 100): #observe the state of the node at times 0.3 * n
N.evolve(0.03 * i, 0.03 * (i + 1))
co.set("pcoIntegrateFire_noiseFrequency", 0.0)
co.set("pcoIntegrateFire_timeDelay", 0.01)
co.set("pcoIntegrateFire_t_ref", 0.05)
co.set("pcoIntegrateFire_alpha", 0.9)
N = co.network()
rewiring = 0.5
coupling = 0.012
#n.useLatticePositioning(100,100);
N.torusNearestNeighbors(40,40,36.0, co.pcoIntegrateFire(), co.weightedEdge())
N.rewire(rewiring)
N.randomizeStates(co.pcoIntegrateFire(), co.uniform(0.0,1.0));
N.randomizeWeights(co.uniform(coupling,coupling));
N.saveAdjacencyList("output/nonconverging.py.graph");
N.observeTime("output/nonconverging.py.phaseCoherence");
N.observePhaseCoherence("output/nonconverging.py.phaseCoherence");
N.evolve(0.0,100.0);
""" DOCSTRING: """
self.defaultDict_NetworkType.update(self.__networkParams)
self.cycle(self.defaultDict_NetworkType['nodeCount'],
self.defaultDict_NetworkType['nearestNeighbours'],
self.defaultDict_NetworkType['nodeType'],
self.defaultDict_NetworkType['edgeType']
)
self.rewire(self.defaultDict_NetworkType['rewiringProbability'],
self.defaultDict_NetworkType['nodeType']
)
self.randomizeStates(self.defaultDict_NetworkType['nodeType'],
self.defaultDict_NetworkType['distributionType']
)
self.__networkInitialized = True
def __initScaleFree(self):
raise IOError ('scaleFree creation not yet defined')
def __initRandomGraph(self):
raise IOError ('randomGraph creation not yet defined')
newNet = Network()
newNet.updateNetworkParams({'networkType': 'smallWorld', 'edgeType': co.weightedEdge(0.01), 'nodeType': co.pcoIntegrateFire()})
newNet.initNetwork()
#newNet.initNodes()
#for i in range(0,10000):
# print newNet.getParam(i,'pcoIntegrateFire_t_ref')
import conedy as co
N = co.network()
co.set("samplingTime" , 1000.0)
nodeNumber = N.addNode(co.pcoIntegrateFire())
N.observeTime("output/evolve2.py.series")
N.observe(nodeNumber, "output/evolve2.py.series")
for i in range (0, 100): #observe the state of the node at times 0.3 * n
N.evolve ( 0.03 * i, 0.03 *( i+1))